prot_H-elongata_contig125585.1911.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig125585.1911.1
Unique Name	prot_H-elongata_contig125585.1911.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	374

Homology

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: D7FMB4_ECTSI (RRM_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB4_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 7.190e-63
Identity = 120/178 (67.42%), Postives = 128/178 (71.91%), Query Frame = 0

Query:  206 GGVRGSPPLRGMPGNLMTCHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--RSMRCNSDSGQMLV-------SAGPGCGAGGGDEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            GG+RGSPPLRGMPG      G                        XXXX   R++RCNSDS   ++       SAGP C   GG EFSLDLKKVSKGMDKRTTIM+RNIPNKYTQ MLLQEID+SYRG+YDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFN QRWKNFNSEKV
Sbjct:  533 GGMRGSPPLRGMPGGCAGAGGLGYKDVRTRQMSLDEARLQHGNSGXXXXXXXRTVRCNSDSSSQILMAASSPHSAGPECSGNGGHEFSLDLKKVSKGMDKRTTIMVRNIPNKYTQMMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKV 710

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A836CK27_9STRA (RNA recognition motif 2-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK27_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.490e-47
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 0

Query:  285 LDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            LD KK++KG D+RTTIMIRNIPNKYTQAMLLQEIDA++RG YDFFYLPIDFKN+CNVGYAFINF+D+RRIV F REF+GQRW+NFNSEKV
Sbjct:    1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKV 90

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A836C7Y7_9STRA (RNA recognition motif 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.580e-44
Identity = 71/93 (76.34%), Postives = 87/93 (93.55%), Query Frame = 0

Query:  282 EFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            EF+LD+ K++KG+DKRTTIMIRNIPNKYTQAMLLQEI+ ++  ++DFFYLPIDFKN+CNVGYAFINF+D+RRI+ F REF+GQRW+NFNSEKV
Sbjct:    8 EFALDIGKIAKGLDKRTTIMIRNIPNKYTQAMLLQEINVNFLEAFDFFYLPIDFKNRCNVGYAFINFIDFRRIIAFTREFHGQRWRNFNSEKV 100

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A4D9D2V8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2V8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.080e-38
Identity = 68/96 (70.83%), Postives = 86/96 (89.58%), Query Frame = 0

Query:  279 GGDEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            G  EF LD++++  GMD+RTTIM+RN+PNKY+Q +LL EI+A+++G YDFFYLPIDFKNKCNVGYAFINF++ + IVPFF+EFNGQRW+NFNSEKV
Sbjct: 1103 GDTEFHLDVERILMGMDRRTTIMVRNVPNKYSQQLLLNEINATHKGKYDFFYLPIDFKNKCNVGYAFINFIEPKAIVPFFKEFNGQRWRNFNSEKV 1198

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A7S2V2F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.260e-38
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 0

Query:  281 DEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            ++F LD+K+V    D+RTT+M+RNIPNKYTQ MLLQEI+ +++ +YDFFYLPIDFKNKCNVGYAFINF+    IV F+ EFNG++WKNFNSEKV
Sbjct:   19 EDFKLDVKRVLARSDQRTTVMVRNIPNKYTQQMLLQEINVNHKETYDFFYLPIDFKNKCNVGYAFINFISPLSIVEFYEEFNGRKWKNFNSEKV 112

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A482RU13_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU13_9ARCH)

HSP 1 Score: 141 bits (356), Expect = 3.530e-37
Identity = 64/113 (56.64%), Postives = 83/113 (73.45%), Query Frame = 0

Query:  262 SDSGQMLVSAGPGCGAGGGDEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            S  G   V  G      G  +F+LDL+++  G + RTT+M+RNIPNKY+Q MLL+E++A ++G YDFFYLPIDFKN+CNVGYAFINF+    IV F R F GQRW++FNSEK+
Sbjct:    9 SSDGTNAVRGGRATRGEGVGDFALDLQRLQDGSETRTTLMVRNIPNKYSQQMLLEEVNAQHQGQYDFFYLPIDFKNRCNVGYAFINFLSPLHIVDFVRRFEGQRWRSFNSEKI 121

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A485KLZ3_9STRA (Aste57867_9034 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLZ3_9STRA)

HSP 1 Score: 152 bits (383), Expect = 6.490e-37
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 0

Query:  281 DEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            +E+SL + +V KG D+RTT+MIRNIPNKYTQ MLL EI+  ++G+YDFFYLPIDFKNKCN+GYAFINFM Y  IVPF+  FNGQ+W+NFNSEKV
Sbjct:  556 NEYSLGIDRVHKGEDRRTTLMIRNIPNKYTQTMLLAEINEHHQGAYDFFYLPIDFKNKCNMGYAFINFMAYEAIVPFYEAFNGQKWRNFNSEKV 649

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A6G0XDK4_9STRA (RRM_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDK4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.830e-37
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 0

Query:  283 FSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            FSL L +VSKG+D+RTT+MIRNIPNKYTQ+MLL EI+ +++  YDFFYLPIDFKNKCN+GYAFINF+ Y  IVPF++ FNGQ+W+NFNSEKV
Sbjct:  416 FSLVLDRVSKGLDRRTTLMIRNIPNKYTQSMLLAEINENHQDDYDFFYLPIDFKNKCNMGYAFINFVTYDAIVPFYQAFNGQKWRNFNSEKV 507

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: K3X4L6_GLOUD (RRM_2 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4L6_GLOUD)

HSP 1 Score: 152 bits (383), Expect = 9.120e-37
Identity = 75/120 (62.50%), Postives = 88/120 (73.33%), Query Frame = 0

Query:  255 GRSMRCNSDSGQMLVSAGPGCGAGGGDEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            G S   NS +G +      G    G  EFSL +++VS G D RTT+MIRNIPNKYTQ MLL EI+  +RG YDFFYLPIDFKNKCN+GYAFINFMD   IVPF++EF+ Q+W NFNSEKV
Sbjct:  653 GGSFASNSSNGTVTT----GRNDQGVGEFSLSIERVSAGEDTRTTLMIRNIPNKYTQQMLLHEINVHHRGQYDFFYLPIDFKNKCNMGYAFINFMDAASIVPFYQEFDSQKWTNFNSEKV 768

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BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Match: A0A067D9S4_SAPPC (B box-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9S4_SAPPC)

HSP 1 Score: 150 bits (378), Expect = 2.090e-36
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 0

Query:  281 DEFSLDLKKVSKGMDKRTTIMIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNGQRWKNFNSEKV 374
            DEFSL + +V  G DKRTT+MIRNIPNKYTQAMLL EI+A + G+YDFFYLPIDFKNKCN+GYAF+NFM+   I PF+  FNGQRW NFNS+KV
Sbjct:  486 DEFSLGIDRVYAGTDKRTTLMIRNIPNKYTQAMLLAEINARHAGTYDFFYLPIDFKNKCNMGYAFVNFMETATIGPFYEAFNGQRWPNFNSDKV 579

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot

BLAST of mRNA_H-elongata_contig125585.1911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FMB4_ECTSI	7.190e-63	67.42	RRM_2 domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A836CK27_9STRA	2.490e-47	83.33	RNA recognition motif 2-domain-containing protein ...	[more]
A0A836C7Y7_9STRA	1.580e-44	76.34	RNA recognition motif 2-domain-containing protein ...	[more]
A0A4D9D2V8_9STRA	1.080e-38	70.83	RRM domain-containing protein n=2 Tax=Monodopsidac...	[more]
A0A7S2V2F9_9STRA	2.260e-38	68.09	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A482RU13_9ARCH	3.530e-37	56.64	RRM domain-containing protein (Fragment) n=1 Tax=a...	[more]
A0A485KLZ3_9STRA	6.490e-37	71.28	Aste57867_9034 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A6G0XDK4_9STRA	6.830e-37	72.83	RRM_2 domain-containing protein n=1 Tax=Aphanomyce...	[more]
K3X4L6_GLOUD	9.120e-37	62.50	RRM_2 domain-containing protein n=1 Tax=Globispora...	[more]
A0A067D9S4_SAPPC	2.090e-36	72.34	B box-type domain-containing protein n=2 Tax=Sapro...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007201	Mei2/Mei2-like, C-terminal RNA recognition motif	PFAM	PF04059	RRM_2	coord: 297..374 e-value: 3.0E-36 score: 123.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 290..373 e-value: 7.9E-5 score: 25.2
None	No IPR available	PANTHER	PTHR23147:SF111	PROTEIN MEI2-LIKE 3	coord: 282..374
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 282..374
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 299..368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig125585	contig	H-elongata_contig125585:59..1758 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig125585.1911.1	mRNA_H-elongata_contig125585.1911.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig125585 59..1758 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig125585.1911.1 ID=prot_H-elongata_contig125585.1911.1|Name=mRNA_H-elongata_contig125585.1911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=374bp
MTWRQDYPREFGRMVDSYTPMTSANTTPSTTPGSTPPSGSDAHSCLGTNA
EGYSLPYVSMPLHQQHLLQHQQKYSRSAGPSPSSSRDVHIQHHRVNSSGS
GSSSSAGAHHMYASASTSGSGAAGHHPPPRMHSQHIHGGGDMHPPPPYGS
ASPSSGAGMGAYYDLPLGYHGERDDDRAPGTSMWAAATAAGLSLSLSPPS
ARGGAGGVRGSPPLRGMPGNLMTCHGGPGGGSGGLGYKDRPRQMSLDEGR
LGGGGRSMRCNSDSGQMLVSAGPGCGAGGGDEFSLDLKKVSKGMDKRTTI
MIRNIPNKYTQAMLLQEIDASYRGSYDFFYLPIDFKNKCNVGYAFINFMD
YRRIVPFFREFNGQRWKNFNSEKV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007201	Mei2-like_Rrm_C
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf