prot_H-elongata_contig119882.1535.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig119882.1535.1
Unique Nameprot_H-elongata_contig119882.1535.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length47
Homology
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A392M0Q4_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M0Q4_9FABA)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6
Identity = 20/47 (42.55%), Postives = 33/47 (70.21%), Query Frame = 0
Query:    1 RYDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            ++ IDY E ++P     ++++VV +A +N W+MYH+DVK AF+  PL
Sbjct:  292 KHGIDYNEVFAPVARIETVRLVVALACKNRWKMYHLDVKSAFLNGPL 338          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2K3JU38_TRIPR (Reverse transcriptase (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JU38_TRIPR)

HSP 1 Score: 49.7 bits (117), Expect = 7.480e-6
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    1 RYDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            ++ IDY E ++      ++++VV +A +N WRMYH+DVK AF+  PL
Sbjct:   40 KHGIDYNEVFASVARIETVRLVVALACKNRWRMYHLDVKSAFLNGPL 86          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2Z6MGP9_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MGP9_TRISU)

HSP 1 Score: 50.1 bits (118), Expect = 8.970e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    4 IDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            ID+ E ++P     +I++VVG+AN N+W MY +DVK AF+  PL
Sbjct:  722 IDFDEVFAPVARIETIRLVVGLANSNNWPMYQMDVKCAFLNGPL 765          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2Z6MI56_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MI56_TRISU)

HSP 1 Score: 50.1 bits (118), Expect = 8.970e-6
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    4 IDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            ID+ E ++P     +I++VVG+AN N+W MY +DVK AF+  PL
Sbjct:  762 IDFDEVFAPVARIETIRLVVGLANSNNWPMYQMDVKCAFLNGPL 805          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2K3MSU0_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSU0_TRIPR)

HSP 1 Score: 49.7 bits (117), Expect = 1.230e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0
Query:    1 RYDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            R  IDY E ++P     +I++V  +AN NDW MY +DVK AF+  P+
Sbjct:  908 REGIDYGEVFAPVTRMETIRLVTAIANINDWPMYQMDVKSAFLNGPI 954          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A392PM14_9FABA (Reverse transcriptase (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PM14_9FABA)

HSP 1 Score: 48.9 bits (115), Expect = 1.870e-5
Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    4 IDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            IDY E Y+P     +++++VG+AN N+W ++ +DVK AF+  PL
Sbjct:   98 IDYDEVYAPVARIETVRLIVGIANINNWSIHQMDVKCAFLNGPL 141          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2Z6NYP5_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NYP5_TRISU)

HSP 1 Score: 48.5 bits (114), Expect = 3.150e-5
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0
Query:    1 RYDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            R  IDY E  +P     +I++V  +AN NDW MY +DVK AF+  P+
Sbjct:  748 REGIDYGEVIAPVTRMETIRLVTAIANMNDWPMYQMDVKSAFLNGPI 794          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2Z6PKK6_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PKK6_TRISU)

HSP 1 Score: 48.1 bits (113), Expect = 4.300e-5
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    4 IDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            I++ E ++P     +I +VVG+AN N+W MY +DVK AF+  PL
Sbjct:  748 INFDEVFAPVAIIETITLVVGLANSNNWPMYQMDVKCAFLNGPL 791          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2Z6MET5_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MET5_TRISU)

HSP 1 Score: 48.1 bits (113), Expect = 4.300e-5
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    1 RYDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            R  IDY+E Y+P     +I++VV +AN N+W ++ +DVK AF+  PL
Sbjct:  786 REGIDYEEVYAPVARIETIRLVVAMANINNWSIHQMDVKCAFLNGPL 832          
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Match: A0A2N9GAP6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GAP6_FAGSY)

HSP 1 Score: 47.8 bits (112), Expect = 5.890e-5
Identity = 18/46 (39.13%), Postives = 31/46 (67.39%), Query Frame = 0
Query:    2 YDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL 47
            YDIDY+E+++P    SS++ ++ VA    W+++ +DVK AF+   L
Sbjct:  488 YDIDYKETFAPIARLSSVRTLLAVATSRQWKLFQMDVKNAFLNGDL 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig119882.1535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A392M0Q4_9FABA2.560e-642.55Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
A0A2K3JU38_TRIPR7.480e-642.55Reverse transcriptase (Fragment) n=1 Tax=Trifolium... [more]
A0A2Z6MGP9_TRISU8.970e-647.73Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z6MI56_TRISU8.970e-647.73Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2K3MSU0_TRIPR1.230e-544.68Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]
A0A392PM14_9FABA1.870e-543.18Reverse transcriptase (Fragment) n=1 Tax=Trifolium... [more]
A0A2Z6NYP5_TRISU3.150e-544.68Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z6PKK6_TRISU4.300e-545.45Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2Z6MET5_TRISU4.300e-544.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GAP6_FAGSY5.890e-539.13Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig119882contigH-elongata_contig119882:1869..2009 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig119882.1535.1mRNA_H-elongata_contig119882.1535.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig119882 1869..2009 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig119882.1535.1 ID=prot_H-elongata_contig119882.1535.1|Name=mRNA_H-elongata_contig119882.1535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
RYDIDYQESYSPSPFASSIKIVVGVANENDWRMYHVDVKQAFVKAPL
back to top