prot_H-elongata_contig119704.1519.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig119704.1519.1
Unique Name	prot_H-elongata_contig119704.1519.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	64

Homology

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BLAST of mRNA_H-elongata_contig119704.1519.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 6.400e-13
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0

Query:   14 IRDPGADPSGNTLRIRLVVSILEGCGSYFVRGGGLSKLSNFLSVFQR 60
            +R P  DP G+ LRIRLVV++LEGCGSYFVRG GL KLS FL VFQR
Sbjct: 1245 VRSP-TDPPGDCLRIRLVVAVLEGCGSYFVRGAGLDKLSKFLGVFQR 1290

[Close]

BLAST of mRNA_H-elongata_contig119704.1519.1 vs. uniprot
Match: A0A0D2WPG1_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WPG1_CAPO3)

HSP 1 Score: 49.7 bits (117), Expect = 2.590e-5
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = 0

Query:   17 PGADPSGNTLRIRLVVSILEGCGSYFVRGGGLSKLSNFLSVFQRLV 62
            P  DPS N  RIRL+ +ILEGCGS+F  G    +L  FL  FQR V
Sbjct: 1052 PPLDPSDNYFRIRLICTILEGCGSFFNSGMAGKRLDCFLVYFQRYV 1097

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig119704.1519.1 vs. uniprot

BLAST of mRNA_H-elongata_contig119704.1519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEF3_ECTSI	6.400e-13	72.34	Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID...	[more]
A0A0D2WPG1_CAPO3	2.590e-5	54.35	Uncharacterized protein n=2 Tax=Capsaspora owczarz...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 3..63 e-value: 7.9E-9 score: 37.1
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 6..62

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig119704	contig	H-elongata_contig119704:278..469 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig119704.1519.1	mRNA_H-elongata_contig119704.1519.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig119704 278..469 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig119704.1519.1 ID=prot_H-elongata_contig119704.1519.1|Name=mRNA_H-elongata_contig119704.1519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MPHAVVCFGVGGGIRDPGADPSGNTLRIRLVVSILEGCGSYFVRGGGLSK
LSNFLSVFQRLVGF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016021	MIF4-like_sf
IPR016024	ARM-type_fold