prot_H-elongata_contig11961.1512.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11961.1512.1
Unique Nameprot_H-elongata_contig11961.1512.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 6.390e-50
Identity = 90/138 (65.22%), Postives = 107/138 (77.54%), Query Frame = 0
Query:    1 GRRPSVAKKRINPLERTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMK----WVLTALLTHAKK----SLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKPK 130
            G RP   +K+ +PLE+TLAIL+QSMRGNK+VVEMKND EISG+LEETD+NMK    W+    LT ++     SLSMVDVR T+  GSVRKMDV LVQGKMIRYVHIPD+VDAISNLQ +MR M++    Y RNM+KPK
Sbjct:    6 GNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQG--YHRNMLKPK 141          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.540e-33
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   34 MKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKPKTT 132
            MKND EISG+LEETD+NM             +LSMVDVR T+  GSVRKMDV LVQGKMIRYVHIPD+VDAISNLQ +MR M++    YRRNM+KPKT+
Sbjct:    1 MKNDAEISGILEETDRNM-------------NLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQG--YRRNMLKPKTS 84          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: W4H8K5_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8K5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.600e-15
Identity = 38/118 (32.20%), Postives = 68/118 (57.63%), Query Frame = 0
Query:   16 RTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKPKTTP 133
            R++ +L+QSM G  V +E+K +  + G +EE  +                + + +V+ TS QG++  +D   V GKMI +VH+PD ++   +L+ YM+ ++K+ + Y+R+  KP TTP
Sbjct:    6 RSVVVLLQSMLGMDVKIELKTEYVLEGRVEEVGEG------------NMDVRLTNVKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAVHLRDYMQMVDKNRSMYQRSTRKPATTP 111          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A024UUS1_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUS1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-13
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   16 RTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQ-NMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKPKTTP 133
            R++ +L+QSM G  V +E+K +  + G +EE  + NM   LT              V+ TS QG++  +D   V GKMI +VH+PD ++  ++L+ YM  ++K+   Y+R+  KP T P
Sbjct:    6 RSVVLLLQSMLGMDVKIELKTEYTLEGRVEEVGEGNMDVRLTG-------------VKQTSPQGAIVHLDEVFVMGKMILFVHLPDRLNVAAHLRDYMHLVDKNKNLYQRSTRKPPTKP 111          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A1V9ZKH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKH8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.680e-12
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   16 RTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKPKTTP 133
            RTL I++QSM G +V +E+K +  + G +EE  + M       L+H         VR     G V + D   V GKMI YVHIPD V+  ++++ Y+  +E++   Y+R + KP   P
Sbjct:    8 RTLLIVLQSMLGMEVTIELKTEHVLVGTVEEVTEGMD----VRLSH---------VRQVGPSGRVLEFDELYVMGKMILYVHIPDRVNINAHMKDYVHMVERNKKMYKRAVRKPTANP 112          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A1W0ABR9_9STRA (Sm domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABR9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.510e-11
Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 0
Query:   16 RTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKP 129
            RTL I++QSM G +V++++K + ++ G +EE    M              + + +V   +  G +  +D   V GKMI YVHIPD +   ++L+ Y++ +E++   Y R + KP
Sbjct:    8 RTLLIVLQSMLGMEVMIDLKTEYQLKGTIEEVGDGM-------------DVRLSNVSQIAPNGKMLLLDELFVMGKMILYVHIPDRIHLNTHLKEYVQMVERNKKMYNRAVRKP 108          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.920e-11
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 0
Query:   16 RTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRR 124
            R+L +L++S+ G +V V++KND  + G++ E   +M +             +MVD   T   G++ +MD   V G+ I YVHIPD ++   +LQ Y R + +S+  Y R
Sbjct:   42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDMDF-------------TMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQSATMYTR 137          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL)

HSP 1 Score: 65.1 bits (157), Expect = 7.600e-11
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 0
Query:    8 KKRINPLERTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKPKTTP 133
            KKR  P  R+L +L++S+ G +V +++KND  + G++EE   +M + L             +D   T   G   +++   V GK + YVHIPD ++   +LQ Y R + +S   Y+R+  K    P
Sbjct:   14 KKRRRP--RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDMDFTL-------------LDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQSQDMYKRDKRKAPLPP 124          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A7S2RGP2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RGP2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-10
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 0
Query:   16 RTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMI 127
            R+L  L++ M G+ + VE+KND+ +SG L+  D  M  VL       K     ++ +     G    M+VAL+ GK IRY+H PD++D    L+++ +   K+ A ++RN I
Sbjct:   25 RSLCSLLECMEGDVITVELKNDLVVSGYLDGVDNGMNLVL------GKAHQYWMEGKNKGRHGP--NMEVALISGKRIRYIHFPDKLDMEGELRSWHK--RKNKAKFKRNYI 126          
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Match: A0A1Y1HWH1_KLENI (Sm domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWH1_KLENI)

HSP 1 Score: 63.2 bits (152), Expect = 4.390e-10
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 0
Query:    6 VAKKRINPLERTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQNMKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPDEVDAISNLQTYMRAMEKSSASYRRNMIKP 129
            + KK+    ER+L  ++Q++ G KV+VE+KNDV + G+LEE D  M  V+              D    + QG   ++ +  +QG+ IR++HIP  V+    ++     + K+   Y + M  P
Sbjct:    1 MVKKKGRASERSLICVIQALVGMKVLVELKNDVTVKGVLEECDLGMNIVIK-------------DAIQENLQGIKTELALMFIQGRRIRFIHIPKSVNVSDAVEAQRERIRKAEVMYTQAMGGP 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11961.1512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S1_ECTSI6.390e-5065.22Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JYY5_9PHAE6.540e-3365.66Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
W4H8K5_9STRA7.600e-1532.20Sm domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A024UUS1_9STRA1.700e-1334.45Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A1V9ZKH8_9STRA1.680e-1234.75Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1W0ABR9_9STRA2.510e-1130.70Sm domain-containing protein n=1 Tax=Thraustotheca... [more]
A0A5D6XV54_9STRA5.920e-1133.03Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A8K1CIL4_PYTOL7.600e-1130.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2RGP2_9STRA1.330e-1033.93Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A1Y1HWH1_KLENI4.390e-1029.84Sm domain-containing protein n=1 Tax=Klebsormidium... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 22..97
e-value: 6.8E-7
score: 28.9
NoneNo IPR availableGENE3D2.30.30.100coord: 18..108
e-value: 7.4E-17
score: 62.6
NoneNo IPR availablePANTHERPTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10coord: 14..129
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 22..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11961contigH-elongata_contig11961:58..6899 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11961.1512.1mRNA_H-elongata_contig11961.1512.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11961 58..6899 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11961.1512.1 ID=prot_H-elongata_contig11961.1512.1|Name=mRNA_H-elongata_contig11961.1512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
GRRPSVAKKRINPLERTLAILVQSMRGNKVVVEMKNDVEISGLLEETDQN
MKWVLTALLTHAKKSLSMVDVRYTSAQGSVRKMDVALVQGKMIRYVHIPD
EVDAISNLQTYMRAMEKSSASYRRNMIKPKTTPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf