prot_H-elongata_contig11871.1447.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11871.1447.1
Unique Nameprot_H-elongata_contig11871.1447.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length548
Homology
BLAST of mRNA_H-elongata_contig11871.1447.1 vs. uniprot
Match: D8LTE9_ECTSI (RecQ-mediated genome instability protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE9_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.260e-74
Identity = 234/632 (37.03%), Postives = 306/632 (48.42%), Query Frame = 0
Query:    1 MAVGDGRQTVVGFEYRRIQELPADPPPGLKLLLVEPWVRRGILLLSSENTIVLGGEVASLVKARDSARGEGDKSGTGSAVANARDDNNQSAAT-----GTSAXXXXXXXXIQSDGNPQR------------------------SRDRDQASQGSSRLPVSRPHGRQSNADTDAVDQSTVTPQSRQDNYSGRRHPGALDGSGTSAKPQQPP---GAAVVNPYATVSR---------------------------ATSNPTVRPVTGTTXXXXXXXXXXXXASLTDKIQRRSQVGEMRMPAFRD-SDDDEPQFEYFEEPDFGEEQPVEELPPPEEVLAHDSSDITRG-DPSPRT--PSASSNTAFPAFETPVPSAPPAVTPLPKIVTARVQQDRLREKGKRR--------EHDNPEDKTVDGRDGRGS--------APRQKRGRTDP------GSPGDRQSADPVELPSGPFTPLANLERAGARAVAGGVYRVKAVVSDTMGCKLRKKKYLLVIEIEDGTSVLRVRLSDQITLRLFTVDAREFKKIFQADRDRGLGIQAKVEQEIRQMEGVMEIDFNPATAALQSPAAPETPCTTLSQGSASGDSEWSLPVLMSVSPPTEADCRQLLLRAQALV 547
            +A+GDGRQTV  FEYRR+Q L ADPP GLKLLLVEPWVRRGILLLSSENT VLGGEV+SLV+AR++AR  G +S  G+A     +D+     T     G  A           +  P+                         S   D+ +  S  + +S       NADT       ++ Q R+                        P   G+ V NPYA                               ATS+       GT             +S +   Q R + GE R+PAF+D  DDD P FEY EEPDF +E+   E PP E V A +++ +  G +P  R+  P  S++T  P                                            +  + E   ++G  G G         + R KRGR+        G   +R +      PSGP+T L +L+R    A  GG+YRVKAVVSDT  CK+RKKKYLLV+EIEDGT+V+ VRLS+QIT RLF V+AREFKKIFQAD ++ + IQ +VE+EIR+MEGVMEI  +    +  SPA   TP   +SQ SA+GDSEW LP+++SV PPT+ DC +LL R  +L+
Sbjct:  117 LALGDGRQTVAAFEYRRVQGLVADPPLGLKLLLVEPWVRRGILLLSSENTTVLGGEVSSLVEARETARAGGAQSTAGAATNATNNDDTLEPRTSRNQPGEPAGRTATDSGAAGNSGPRXXXXXXXXXXXXXXXXXXXXXXXGGSHRHDENADPSGVVDLSSSSSSGGNADT------PLSSQGRRXXXXXXXXXXXXXXXXXXXXXXXRPSGSGSGVFNPYAAAXXXXXXXXXXXXXXXXXXXXXXXXXXTLSATSS--AAETVGTARSQSPQGAARSRSSGSSGGQGRPRGGETRVPAFQDLEDDDGPGFEYLEEPDFDDEEHDNE-PPKEAVAAANAAAVRNGRNPGMRSDPPRVSTSTGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGDGEVADIEGEFGGGGRSRTGLEVSSRSKRGRSSSEIGSRAGGGRERSNGTRPSPPSGPYTSLEDLDR--LAAAGGGMYRVKAVVSDTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQADPEKAISIQTRVEKEIREMEGVMEIQTSAGATSSPSPA---TPGAAMSQNSATGDSEWGLPMVVSVKPPTDGDCLELLSRVTSLL 734          
BLAST of mRNA_H-elongata_contig11871.1447.1 vs. uniprot
Match: A0A7J7QC97_9CHLO (RMI1_N domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QC97_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 9.840e-7
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    5 DGRQTVVGFEYRRIQELPADPPPGLKLLLVEPWVRRGILLLSSENTIVLGGEVASLVKAR 64
            DG Q +V  EYR    L    P G+KLLLV P VRRG+LLL  EN +VLGG V  L  AR
Sbjct:   62 DGVQQLVAVEYRHCPALGLLMPAGIKLLLVNPAVRRGMLLLQPENVVVLGGVVERLEAAR 121          
BLAST of mRNA_H-elongata_contig11871.1447.1 vs. uniprot
Match: A0A383VJY1_TETOB (DUF1767 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJY1_TETOB)

HSP 1 Score: 60.1 bits (144), Expect = 1.030e-5
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 0
Query:    5 DGRQTVVGFEYRRIQELPADPPPGLKLLLVEPWVRRGILLLSSENTIVLGGEVASLVKAR 64
            DG Q +V  EYR    L    P G+KLLLV P VRRG+LLL  EN +VLGG V  L  AR
Sbjct:  119 DGVQQLVAVEYRHCPALGLLMPAGIKLLLVNPAVRRGVLLLQPENVVVLGGVVERLEAAR 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11871.1447.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTE9_ECTSI1.260e-7437.03RecQ-mediated genome instability protein 1 n=2 Tax... [more]
A0A7J7QC97_9CHLO9.840e-755.00RMI1_N domain-containing protein n=1 Tax=Scenedesm... [more]
A0A383VJY1_TETOB1.030e-555.00DUF1767 domain-containing protein n=1 Tax=Tetrades... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013894RecQ mediated genome instability protein, N-terminalPFAMPF08585RMI1_Ncoord: 3..66
e-value: 1.6E-15
score: 57.4
IPR032199Recq-mediated genome instability protein 1, C-terminal OB-fold domainPFAMPF16099RMI1_Ccoord: 384..542
e-value: 7.5E-10
score: 38.8
IPR042470RecQ mediated genome instability protein, N-terminal, subdomain 2GENE3D2.40.50.770coord: 1..68
e-value: 6.1E-15
score: 56.9
IPR039215RecQ-mediated genome instability protein 1PANTHERPTHR14790FAMILY NOT NAMEDcoord: 5..542

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11871contigH-elongata_contig11871:1577..5875 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11871.1447.1mRNA_H-elongata_contig11871.1447.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11871 704..7465 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11871.1447.1 ID=prot_H-elongata_contig11871.1447.1|Name=mRNA_H-elongata_contig11871.1447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=548bp
MAVGDGRQTVVGFEYRRIQELPADPPPGLKLLLVEPWVRRGILLLSSENT
IVLGGEVASLVKARDSARGEGDKSGTGSAVANARDDNNQSAATGTSASNQ
SAAAGIQSDGNPQRSRDRDQASQGSSRLPVSRPHGRQSNADTDAVDQSTV
TPQSRQDNYSGRRHPGALDGSGTSAKPQQPPGAAVVNPYATVSRATSNPT
VRPVTGTTTTTGGVGGGSGGASLTDKIQRRSQVGEMRMPAFRDSDDDEPQ
FEYFEEPDFGEEQPVEELPPPEEVLAHDSSDITRGDPSPRTPSASSNTAF
PAFETPVPSAPPAVTPLPKIVTARVQQDRLREKGKRREHDNPEDKTVDGR
DGRGSAPRQKRGRTDPGSPGDRQSADPVELPSGPFTPLANLERAGARAVA
GGVYRVKAVVSDTMGCKLRKKKYLLVIEIEDGTSVLRVRLSDQITLRLFT
VDAREFKKIFQADRDRGLGIQAKVEQEIRQMEGVMEIDFNPATAALQSPA
APETPCTTLSQGSASGDSEWSLPVLMSVSPPTEADCRQLLLRAQALV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013894RMI1_N
IPR032199RMI1_C
IPR042470RMI1_N_2
IPR039215RMI1