prot_H-elongata_contig11851.1429.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11851.1429.1
Unique Nameprot_H-elongata_contig11851.1429.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length316
Homology
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A8J2T2D7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2D7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.550e-19
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 0
Query:   51 RKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQ 127
            R KDPR PK   S++M FS+HHR +L+ EN    F ++ K +G  WKAAT  E++PF+DLAA+D+ RYAREL EYK+
Sbjct:   84 RYKDPRAPKSATSAYMYFSKHHRTLLKRENASLTFGDLGKTVGAMWKAATPGEKKPFEDLAARDRARYARELEEYKK 160          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A6H5JGF1_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.550e-19
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   66 MCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQWVRAEGSKGRKDEELATSAPAVAV 151
            M FSRHHR ILR++NRE  FS+I KA+G+ WK+AT  ++RPFDDL+A+DK RYAREL EYK W+  +        E+ T A   AV
Sbjct:    1 MWFSRHHRAILRTKNREMSFSDIGKAVGVLWKSATDEQKRPFDDLSAEDKARYARELAEYKAWLLLKQGSTENKGEVPTQADKAAV 86          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A0L0V1A0_9BASI (HMG box domain-containing protein n=2 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0V1A0_9BASI)

HSP 1 Score: 77.8 bits (190), Expect = 2.420e-14
Identity = 34/83 (40.96%), Postives = 58/83 (69.88%), Query Frame = 0
Query:   45 RICKSRRKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQ 127
            ++ K +++KDP  PK P+S++M FS+  R  +++EN E  F EI + +GL+WK  T  E++P++D+AA+DK R+  E  EY++
Sbjct:   23 KVKKVKKEKDPNAPKRPLSAYMFFSQDWRERIKTENPEVSFGEIGRLLGLKWKGLTDEEKKPYEDMAARDKKRHEAEKAEYER 105          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: F0YAN0_AURAN (HMG box domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAN0_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 3.500e-14
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0
Query:   62 VSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEY 125
             S++M FS+HHR +L+ EN +  F ++ K +G  WKAAT  E++PF+DLAA D+TRY  EL EY
Sbjct:   20 TSAYMYFSKHHRLLLKRENSDLTFGDLGKTVGAMWKAATPQEKKPFEDLAAADRTRYNSELSEY 83          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: F4RQM9_MELLP (HMG box domain-containing protein (Fragment) n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RQM9_MELLP)

HSP 1 Score: 74.3 bits (181), Expect = 2.420e-13
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 0
Query:   50 RRKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQ 127
            +R+KDP  PK P+S++M FS+  R  +++EN E  F EI + +GL+WK+    E++P++D+A +DK R+  E  EY++
Sbjct:    5 KREKDPNAPKRPLSAYMFFSQDWRERIKTENPEVSFGEIGRLLGLKWKSLGEEEKKPYEDMACRDKKRHETEKAEYER 82          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A835XNY0_9CHLO (FACT complex subunit SSRP1 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XNY0_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 3.240e-13
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   48 KSRRKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQWVRAEGSKGRKDEELA 143
            K R+KKDP  PK  +S+FM FS   R  ++ EN    F E+ K +G RWKA    E+ PF+++AAKDK RYA  +  YK  V   G +  +D E A
Sbjct:  595 KERKKKDPNAPKKNLSAFMYFSNTSRDKVKQENPGIAFGEVGKLLGERWKAMGAEEKAPFEEMAAKDKVRYAEAMKAYKDKVAGAGKEAEEDGEEA 690          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A0C4F8T8_PUCT1 (HMG box domain-containing protein n=4 Tax=Puccinia TaxID=5296 RepID=A0A0C4F8T8_PUCT1)

HSP 1 Score: 74.3 bits (181), Expect = 4.680e-13
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 0
Query:   50 RRKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQ 127
            +++KDP  PK P+S++M FS+  R  +++EN +  F EI + +GL+WKA    E++P++D+A++DK R+  E  EY++
Sbjct:   29 KKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDVSFGEIGRLLGLKWKALAEEEKKPYEDMASRDKKRHEAEKAEYER 106          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A835XME3_9CHLO (FACT complex subunit SSRP1 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XME3_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 2.330e-12
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0
Query:   48 KSRRKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEYKQWVRAEGSKGRKDEELA 143
            K R+KKDP  PK  +S+FM FS      ++ EN    F E+ K +G RWKA    E+ PF+++AAKDK RYA  +  YK  V   G +  +D E A
Sbjct:  480 KERKKKDPNAPKKNLSAFMYFSNTSSDKVKQENPGIAFGEVGKLLGERWKAMGAEEKAPFEEMAAKDKVRYAEAMKAYKDKVAGAGREAEEDGEEA 575          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: D7G1C1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C1_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.030e-12
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0
Query:   66 MCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAA 112
            M FSRHHR ILR++NRE  FS+I KA+G+ WK+AT  ++RPFDDL+A
Sbjct:    1 MWFSRHHRAILRTKNREMSFSDIGKAVGVLWKSATDEQKRPFDDLSA 47          
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Match: A0A0S1MK77_PHAPC (HMG box domain-containing protein n=1 Tax=Phakopsora pachyrhizi TaxID=170000 RepID=A0A0S1MK77_PHAPC)

HSP 1 Score: 71.6 bits (174), Expect = 4.210e-12
Identity = 30/78 (38.46%), Postives = 54/78 (69.23%), Query Frame = 0
Query:   48 KSRRKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAATVAERRPFDDLAAKDKTRYARELVEY 125
            +++++KDP  PK P+S++M FS+  R  +++EN E  F EI + +G +WK+ +  E++P++D+A +DK R+  E  EY
Sbjct:   24 RTKKEKDPNAPKRPLSAYMYFSQDWRERIKAENPEVSFGEIGRLLGQKWKSLSDEEKKPYEDMAGRDKKRHEAEKAEY 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11851.1429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2T2D7_9STRA1.550e-1954.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5JGF1_9PHAE4.550e-1954.65HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0L0V1A0_9BASI2.420e-1440.96HMG box domain-containing protein n=2 Tax=Puccinia... [more]
F0YAN0_AURAN3.500e-1451.56HMG box domain-containing protein (Fragment) n=1 T... [more]
F4RQM9_MELLP2.420e-1341.03HMG box domain-containing protein (Fragment) n=1 T... [more]
A0A835XNY0_9CHLO3.240e-1343.75FACT complex subunit SSRP1 n=1 Tax=Edaphochlamys d... [more]
A0A0C4F8T8_PUCT14.680e-1339.74HMG box domain-containing protein n=4 Tax=Puccinia... [more]
A0A835XME3_9CHLO2.330e-1242.71FACT complex subunit SSRP1 n=1 Tax=Edaphochlamys d... [more]
D7G1C1_ECTSI4.030e-1263.83HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0S1MK77_PHAPC4.210e-1238.46HMG box domain-containing protein n=1 Tax=Phakopso... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 57..127
e-value: 1.6E-16
score: 70.9
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 58..126
e-value: 3.0E-15
score: 56.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 58..126
score: 16.926
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 41..129
e-value: 3.8E-21
score: 77.1
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 47..132
NoneNo IPR availablePANTHERPTHR13711:SF302HIGH MOBILITY GROUP PROTEIN DSP1-RELATEDcoord: 41..228
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 41..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11851contigH-elongata_contig11851:3713..5214 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11851.1429.1mRNA_H-elongata_contig11851.1429.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11851 3567..7074 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11851.1429.1 ID=prot_H-elongata_contig11851.1429.1|Name=mRNA_H-elongata_contig11851.1429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=316bp
MLSNVYAESLARHGPVNFGRRKMNSSGGTNSTSNPGGNHGSNRRRICKSR
RKKDPRLPKPPVSSFMCFSRHHRGILRSENREFGFSEIAKAIGLRWKAAT
VAERRPFDDLAAKDKTRYARELVEYKQWVRAEGSKGRKDEELATSAPAVA
VAPVTSTAGATSVETQTTKSDDMPPAVMTAVDGTGLPTPTKAFQTLPQKR
SATEIGVSWSTAASITPQSHHQDVSTSSHSTALSAPCTKKQRMENVLSNA
GAPSEVAVDVPVSLESLPLMTSEGGEKKARVAPKAVATAPEPALDVGAVS
GSDAFPAQQPELRQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf