prot_H-elongata_contig110286.843.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig110286.843.1
Unique Name	prot_H-elongata_contig110286.843.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	119

Homology

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 4.330e-65
Identity = 112/119 (94.12%), Postives = 116/119 (97.48%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            VLGKYCEKLDPSMAFLAYK+AGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTK EGE QEPA+RRALI+QVVQTALPETKNADEVSTTVKAFMNAD+P ELIELLERIVLQ
Sbjct:  894 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTTVKAFMNADLPSELIELLERIVLQ 1012

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.240e-56
Identity = 99/121 (81.82%), Postives = 112/121 (92.56%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGE--AQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            VLGKYCEKLDPS+AFLAYKRA G CDDD++RVTSENGL+K+QARYLVE+QD+DLWA+VLT P+ +   +EPA+RRALIDQVVQTALPETK ADEVSTTVKAFMNAD+P ELIELLERIVLQ
Sbjct:  909 VLGKYCEKLDPSLAFLAYKRANGECDDDIIRVTSENGLYKDQARYLVERQDLDLWARVLTPPDMDNTKKEPASRRALIDQVVQTALPETKVADEVSTTVKAFMNADLPSELIELLERIVLQ 1029

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 186 bits (473), Expect = 2.000e-52
Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            V+GK+CEKLDP++A LAY+RAGGACDDDL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E    E  ARRALIDQ+VQTALPETKN DEVSTTV+AFMNA++P ELIELLERIVLQ
Sbjct: 1312 VVGKFCEKLDPALAVLAYRRAGGACDDDLIRVTTENGLFKDLARYLVERQDLDLWGKVLKKQEEGETESPARRALIDQIVQTALPETKNPDEVSTTVRAFMNAELPNELIELLERIVLQ 1430

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: A0A2P4XMC0_9STRA (Clathrin heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMC0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.160e-52
Identity = 93/120 (77.50%), Postives = 110/120 (91.67%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPE-GEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            ++GK+CEKLDP++A+LAY+RAGGACDDDL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E GEA+ P+ RRALIDQVVQTALPET N DEVSTTV+AFMNA++P ELIELLERIVLQ
Sbjct:  166 IVGKFCEKLDPALAYLAYRRAGGACDDDLIRVTTENGLFKDLARYLVERQDLDLWGKVLVKQEEGEAESPS-RRALIDQVVQTALPETTNPDEVSTTVRAFMNAELPNELIELLERIVLQ 284

[Close]

BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: A0A225V906_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V906_9STRA)

HSP 1 Score: 185 bits (470), Expect = 4.950e-52
Identity = 91/119 (76.47%), Postives = 106/119 (89.08%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            V+GK+CEKLDP++A+LAY+RAGGACDDDL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E    E  +RRALIDQVVQTALPET N DEVSTTV+AFMNA++P ELIELLERIVLQ
Sbjct:  502 VVGKFCEKLDPALAYLAYRRAGGACDDDLIRVTTENGLFKDLARYLVERQDLDLWGKVLVKQEEGEPESPSRRALIDQVVQTALPETTNPDEVSTTVRAFMNAELPNELIELLERIVLQ 620

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 184 bits (466), Expect = 1.740e-51
Identity = 91/119 (76.47%), Postives = 105/119 (88.24%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            V+G +CEKLDP++AFLAY+RAGGACD+DL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E    E   RRALIDQVVQTALPETKN DEVSTTV+AFMNA++P ELIELLERIVLQ
Sbjct:  909 VVGLFCEKLDPALAFLAYRRAGGACDEDLIRVTTENGLFKDLARYLVERQDLDLWGKVLVKQEEGESESPNRRALIDQVVQTALPETKNPDEVSTTVRAFMNAELPSELIELLERIVLQ 1027

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: F0W5K0_9STRA (Clathrin heavy chain n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K0_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.370e-51
Identity = 89/119 (74.79%), Postives = 106/119 (89.08%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            V+GK+CEKLDP++AFLAY+RAGGACD+DL+RVT +NGLFK+ ARYLVE+QD+DLW KVL K +   QE   RRALIDQVVQTALPETKN DEVSTTV+AFMNA++P EL+ELLERIV+Q
Sbjct:  911 VVGKFCEKLDPALAFLAYRRAGGACDEDLIRVTIDNGLFKDLARYLVERQDLDLWGKVLMKQDENLQESPNRRALIDQVVQTALPETKNPDEVSTTVRAFMNAELPNELMELLERIVMQ 1029

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BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: A0A7S2V2C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 5.890e-51
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            VLG++CEKLDPS+AFLAYKRA G CD+DL+RVTS NGLFK+QARYLVEKQD++LWAKVL       +E + +R+LIDQVVQTALPETKN DEVSTTVKAFM AD+PQELIELLERIVLQ
Sbjct:  904 VLGRFCEKLDPSLAFLAYKRANGECDEDLIRVTSANGLFKDQARYLVEKQDLELWAKVLMGEFAGEEESSHQRSLIDQVVQTALPETKNPDEVSTTVKAFMAADLPQELIELLERIVLQ 1022

[Close]

BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: F0XZJ1_AURAN (Clathrin heavy chain n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZJ1_AURAN)

HSP 1 Score: 182 bits (462), Expect = 6.020e-51
Identity = 95/122 (77.87%), Postives = 106/122 (86.89%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAA---RRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            VLGKYCEKLDPS+AFLAYKRAGG CD DL+RVT+ENGLFK+QARYLVEKQD++LWA VLT P  EA   A+   RRALIDQVVQTALPET++ D VST+VKAFM AD+P ELIELLERIVLQ
Sbjct:  883 VLGKYCEKLDPSLAFLAYKRAGGECDADLIRVTTENGLFKDQARYLVEKQDLELWASVLTPPAEEAVGDASEANRRALIDQVVQTALPETRDPDHVSTSVKAFMAADLPHELIELLERIVLQ 1004

[Close]

BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 182 bits (461), Expect = 8.330e-51
Identity = 90/119 (75.63%), Postives = 105/119 (88.24%), Query Frame = 0

Query:    1 VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAFMNADMPQELIELLERIVLQ 119
            V+G +CEKLDP++AFLAY+RAGGACD+DL+RVT+ENGLFK+ ARYLVE+QD++LW KVL K E    E   RRALIDQVVQTALPETKN DEVSTTV+AFMNA++P ELIELLERIVLQ
Sbjct:  909 VVGVFCEKLDPALAFLAYRRAGGACDEDLIRVTTENGLFKDLARYLVERQDLELWGKVLVKQEEGETESPNRRALIDQVVQTALPETKNPDEVSTTVRAFMNAELPNELIELLERIVLQ 1027

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot

BLAST of mRNA_H-elongata_contig110286.843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWD1_ECTSI	4.330e-65	94.12	Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879...	[more]
A0A835YZH1_9STRA	6.240e-56	81.82	Clathrin heavy chain n=1 Tax=Tribonema minus TaxID...	[more]
A0A2D4BEN2_PYTIN	2.000e-52	77.31	Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re...	[more]
A0A2P4XMC0_9STRA	2.160e-52	77.50	Clathrin heavy chain n=1 Tax=Phytophthora palmivor...	[more]
A0A225V906_9STRA	4.950e-52	76.47	Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho...	[more]
K3WLC2_GLOUD	1.740e-51	76.47	Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ...	[more]
F0W5K0_9STRA	2.370e-51	74.79	Clathrin heavy chain n=1 Tax=Albugo laibachii Nc14...	[more]
A0A7S2V2C2_9STRA	5.890e-51	77.31	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
F0XZJ1_AURAN	6.020e-51	77.87	Clathrin heavy chain n=1 Tax=Aureococcus anophagef...	[more]
A0A5D6XWJ0_9STRA	8.330e-51	75.63	Clathrin-link domain-containing protein n=1 Tax=Py...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 2..59 e-value: 2.9E-7 score: 30.4
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 84..119 score: 12.345
None	No IPR available	PANTHER	PTHR10292	CLATHRIN HEAVY CHAIN RELATED	coord: 1..119
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig110286	contig	H-elongata_contig110286:132..1136 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig110286.843.1	mRNA_H-elongata_contig110286.843.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig110286 132..1136 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig110286.843.1 ID=prot_H-elongata_contig110286.843.1|Name=mRNA_H-elongata_contig110286.843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
VLGKYCEKLDPSMAFLAYKRAGGACDDDLLRVTSENGLFKNQARYLVEKQ
DMDLWAKVLTKPEGEAQEPAARRALIDQVVQTALPETKNADEVSTTVKAF
MNADMPQELIELLERIVLQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000547	Clathrin_H-chain/VPS_repeat
IPR016024	ARM-type_fold