prot_H-elongata_contig10436.357.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10436.357.1
Unique Nameprot_H-elongata_contig10436.357.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length550
Homology
BLAST of mRNA_H-elongata_contig10436.357.1 vs. uniprot
Match: A0A6H5KS89_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS89_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.930e-57
Identity = 145/347 (41.79%), Postives = 184/347 (53.03%), Query Frame = 0
Query:  173 RQRLGQGQR-DTIIENVESEWGQAAPKGRRWIPWPGRSRHITIGPYLESPAVTRTQFGS------------DFFTQSPLDPRAMDTAMGADAGVEYMTGHHPNHLGVMAPNASPQQAAKTRGGINRTTGRR----------------------------SKDPAPDGISSRGGR-RLRRWVSFGDRPS---GISNEAAVKKWIIDVLGPRAVGLVEGKNG-EGQGRQGFRSRSVVSLAEVLKDGRVLVRLAHAVGGKRTAGMAKELEATTPMLQLVNVHTFITLARKVGVPENCLFHPKDLVDGRSSGRCSPAVLKCLTSLSDAVRKNAETDPPEDAYDGPLFGGGD 473
            R+R G G+R +  ++N E EWGQ      R   WPGR+RH+ +G  L+SP V R+ +GS            D   +   D     +A+G++  ++           ++    + Q+ A T  G N T G++                                  +G    GG+ RLRRWV      S   GI +E  V+KWI  VLGPRA+GLVE K   +  G  G   R    L E LKDGR+LVRLAHAVGG R A  A++LEATTPMLQLVNVH F+  AR +GVP   LFH KDLVDG   G CSPAVLKCL++LSDA R+NA  DPP  AYDGPL G G+
Sbjct:  949 RRRGGGGRRIEVFLDNEEGEWGQTPRSRFRLFWWPGRNRHVPVGVCLDSPNVARSSWGSKDAKEGAKRFAWDTEGEGDADCNGGHSAVGSERRIDARFSSSTESA-LLCSEVAAQRGATT--GRNPTNGQQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAGEGGGKNRLRRWVHGKRHTSEADGIPSEQLVEKWIRAVLGPRALGLVEEKRDYDDDGPVGSGGRG---LGEELKDGRLLVRLAHAVGGARAASCAEDLEATTPMLQLVNVHAFMAAARAIGVPATSLFHAKDLVDGPPGGPCSPAVLKCLSALSDAARRNASIDPPGTAYDGPLLGDGE 1289          
BLAST of mRNA_H-elongata_contig10436.357.1 vs. uniprot
Match: D7G3I0_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 2.400e-52
Identity = 140/352 (39.77%), Postives = 173/352 (49.15%), Query Frame = 0
Query:  173 RQRLGQGQR-DTIIENVESEWGQAAPKGRRWIPWPGRSRHITIGPYLESPAVTRTQFGSDFFTQSPLDPRAMDTAMGADAGVEYMTGHHPNHLGVMAPNASPQQAAKTRGGINRTTGRRSKDPAPDGISSRGG-------------------------------------------------RRLRRWVS---FGDRPSGISNEAAVKKWIIDVLGPRAVGLVEGK-NGEGQGRQGFRSRSVVSLAEVLKDGRVLVRLAHAVGGKRTAGMAKELEATTPMLQLVNVHTFITLARKVGVPENCLFHPKDLVDGRSSGRCSPAVLKCLTSLSDAVRKNAETDPPEDAYDGPLFG 470
            R+R G G+R +  ++N E EWGQ      R   WPGR+RH+ +G  L+SP V R+  GS    +      A DT  G DA          +   + A  +S  ++A     +  T   R                                                               +RLRRWV    + +   GI +E  VKKW+  VLGPRA+GLVE   + +  G  G   R    L E LKDGR+LVRLAHAVGG R AG A++LEATTPMLQLVNVH F+  AR +GVP   LFH KDLVDG   G CSPAVLKC+ +LSDA R+NA TDPP  AYDGPL G
Sbjct:  898 RRREGGGRRMEVFLDNEEGEWGQTPRSRFRLFWWPGRNRHVPVGVCLDSPNVARSSRGSKD-AEEGAKRFAWDTEDGGDADCNGGGSVVGSERRIEARFSSSTESALLCSEVVGTFHTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVXXXXXXKKRLRRWVHGKRYTNEADGIPSEQMVKKWVRAVLGPRALGLVEEDGDDDDDGPVGSGGRG---LGEELKDGRLLVRLAHAVGGARAAGCAEDLEATTPMLQLVNVHAFMAAARAIGVPATYLFHAKDLVDGPPGGPCSPAVLKCIAALSDAARRNASTDPPGTAYDGPLLG 1245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10436.357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS89_9PHAE1.930e-5741.79Calponin-homology (CH) domain-containing protein n... [more]
D7G3I0_ECTSI2.400e-5239.77Calponin-homology (CH) domain-containing protein n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 322..447
e-value: 3.3E-9
score: 46.6
IPR001715Calponin homology domainPFAMPF00307CHcoord: 357..450
e-value: 2.1E-8
score: 34.3
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 320..452
score: 13.764
IPR036872CH domain superfamilyGENE3D1.10.418.10coord: 319..459
e-value: 9.6E-17
score: 62.8
IPR036872CH domain superfamilySUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 324..452

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10436contigH-elongata_contig10436:3684..7263 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10436.357.1mRNA_H-elongata_contig10436.357.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10436 3600..9027 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10436.357.1 ID=prot_H-elongata_contig10436.357.1|Name=mRNA_H-elongata_contig10436.357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=550bp
MQRKNSRWVASPAGGRVAIAMGGTTIARAAITAGAASVKWGREGAEERAI
RRRKEAELTKGKSGDSGNDNDSDSGNGNGRREREINERQGPRDHGEGHGG
RPRSRVRRWNSDVGFLGPVRRLRQSSFCDGNEDGREPSDMDVELRPDSEL
MKQQTPPSPFEARWSWRLRQSWRQRLGQGQRDTIIENVESEWGQAAPKGR
RWIPWPGRSRHITIGPYLESPAVTRTQFGSDFFTQSPLDPRAMDTAMGAD
AGVEYMTGHHPNHLGVMAPNASPQQAAKTRGGINRTTGRRSKDPAPDGIS
SRGGRRLRRWVSFGDRPSGISNEAAVKKWIIDVLGPRAVGLVEGKNGEGQ
GRQGFRSRSVVSLAEVLKDGRVLVRLAHAVGGKRTAGMAKELEATTPMLQ
LVNVHTFITLARKVGVPENCLFHPKDLVDGRSSGRCSPAVLKCLTSLSDA
VRKNAETDPPEDAYDGPLFGGGDVTDDPVLPRHTTSKPKKSSRDVSQEGG
PEEGVPRNANGGNEAGLAKSGEELREEMSTSPDSAFSGVYSAGVFSSSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
IPR036872CH_dom_sf