prot_H-elongata_contig10383.323.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10383.323.1
Unique Nameprot_H-elongata_contig10383.323.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.050e-28
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 0
Query:    1 MIRRDMLRAMRHSLSPTEERVLRLRFGLEGGGKRA------GALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGLLLAYADLV 82
            ++RRDM+RAM+  LSPTEER LRLRFGL G  K        GALTFKEIGR MELSAEGIR+M  R+IAKLQ SDEANGLLLAYADL+
Sbjct:  352 VVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 439          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.090e-28
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 0
Query:    1 MIRRDMLRAMRHSLSPTEERVLRLRFGLEGGGKRA------GALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGLLLAYADLV 82
            ++RRDM+RAM+  LSPTEER LRLRFGL G  K        GALTFKEIGR MELSAEGIR+M  R+IAKLQ SDEANGLLL+YADL+
Sbjct:  294 VVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYADLI 381          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A352WXP4_9FIRM (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A352WXP4_9FIRM)

HSP 1 Score: 52.0 bits (123), Expect = 9.540e-7
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 0
Query:    4 RDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQ 66
            R+ L  + H+L+P EE+VL+LRFGLE G  R    T +E+G+  +++ E IRQ+  +A+ KL+
Sbjct:   31 REQLEEVLHTLTPREEQVLKLRFGLEDGRNR----TLEEVGKVFDITRERIRQIEAKALRKLR 89          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A7G2EHY7_ARATH (RNA polymerase sigma factor n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2EHY7_ARATH)

HSP 1 Score: 53.5 bits (127), Expect = 2.330e-6
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    4 RDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGLLLAYADLV 82
            R+ +R + + LSP E R+++LRFG++GG +R+      EIG    LS E +RQ+  RA+ +L+ +  ++GL  AYADL+
Sbjct:  419 RNHVRNLLNVLSPKERRIIKLRFGIDGGKQRS----LSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLH-AYADLL 492          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: SIGF_ARATH (RNA polymerase sigma factor sigF, chloroplastic n=21 Tax=Brassicaceae TaxID=3700 RepID=SIGF_ARATH)

HSP 1 Score: 53.5 bits (127), Expect = 2.340e-6
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    4 RDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGLLLAYADLV 82
            R+ +R + + LSP E R+++LRFG++GG +R+      EIG    LS E +RQ+  RA+ +L+ +  ++GL  AYADL+
Sbjct:  473 RNHVRNLLNVLSPKERRIIKLRFGIDGGKQRS----LSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLH-AYADLL 546          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A1I3K083_9FIRM (RNA polymerase sigma factor SigA n=2 Tax=unclassified Oscillospiraceae TaxID=473772 RepID=A0A1I3K083_9FIRM)

HSP 1 Score: 53.1 bits (126), Expect = 3.070e-6
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 0
Query:    4 RDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGL 74
            R+ L  + H+L+P EE+VLRLRFGLE G  R    T +E+G++  ++ E IRQ+  +A+ KL+    +  L
Sbjct:  287 REQLGEVLHTLTPREEKVLRLRFGLEDGRSR----TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKL 353          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A0G2SWT4_9ROSI (Sigma factor n=1 Tax=Pelargonium tetragonum TaxID=122197 RepID=A0A0G2SWT4_9ROSI)

HSP 1 Score: 53.1 bits (126), Expect = 3.210e-6
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0
Query:    2 IRRDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGL 74
            +++D+ R +  SLSP E+ V+RLRFGL+G       L  KEIG  M +S E IRQM L A  KL+++ +   L
Sbjct:  494 MKQDLDRLLNSSLSPKEQEVIRLRFGLDG----ERMLGLKEIGEMMSVSRERIRQMQLCAFRKLKNNKKTESL 562          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A354MVG3_9FIRM (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A354MVG3_9FIRM)

HSP 1 Score: 52.0 bits (123), Expect = 3.550e-6
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 0
Query:    4 RDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGL 74
            R+ L  + H+L+P EE+V++LRFGLE G  R    T +E+GR+ +++ E IRQ+  +A+ KL+    +  L
Sbjct:  107 REQLCNILHTLTPREEQVIKLRFGLEDGRPR----TLEEVGRQFQITRERIRQIEAKALRKLRHPSRSKTL 173          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A2A7A5A1_9FIRM (RNA polymerase sigma factor SigA n=13 Tax=Faecalibacterium TaxID=216851 RepID=A0A2A7A5A1_9FIRM)

HSP 1 Score: 52.8 bits (125), Expect = 4.210e-6
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    1 MIRRDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGLLLAYAD 80
            ++RR++L  ++ SL+P EERV+ LRFGLE G  R    T +E+G++  ++ E +RQ+  +A+ KL+    A  LL  Y D
Sbjct:  286 LLRRELLHVLK-SLTPREERVITLRFGLEDGRAR----TLEELGKEFNVTRERVRQIEAKALRKLRHPSRAK-LLRDYLD 359          
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Match: A0A316LTS7_9FIRM (RNA polymerase sigma factor SigA n=2 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A316LTS7_9FIRM)

HSP 1 Score: 52.8 bits (125), Expect = 4.230e-6
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    1 MIRRDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELSAEGIRQMALRAIAKLQDSDEANGL 74
            M+ R+ L  + H+L+P EE VL+LRFGLE G  R    T +E+G+  E++ E IRQ+  +A+ KL+    +  L
Sbjct:  293 MMLREQLLEVLHTLTPREESVLKLRFGLEDGRPR----TLEEVGKVFEITRERIRQIEAKALRKLRHPSRSKRL 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10383.323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE3.050e-2871.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI4.090e-2870.45RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A352WXP4_9FIRM9.540e-742.86RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A7G2EHY7_ARATH2.330e-640.51RNA polymerase sigma factor n=1 Tax=Arabidopsis th... [more]
SIGF_ARATH2.340e-640.51RNA polymerase sigma factor sigF, chloroplastic n=... [more]
A0A1I3K083_9FIRM3.070e-640.85RNA polymerase sigma factor SigA n=2 Tax=unclassif... [more]
A0A0G2SWT4_9ROSI3.210e-643.84Sigma factor n=1 Tax=Pelargonium tetragonum TaxID=... [more]
A0A354MVG3_9FIRM3.550e-639.44RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A2A7A5A1_9FIRM4.210e-640.00RNA polymerase sigma factor SigA n=13 Tax=Faecalib... [more]
A0A316LTS7_9FIRM4.230e-640.54RNA polymerase sigma factor SigA n=2 Tax=Clostridi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 13..66
e-value: 1.4E-9
score: 37.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..80
e-value: 7.0E-15
score: 56.5
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 3..73
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 3..73
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 2..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10383contigH-elongata_contig10383:3083..3331 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10383.323.1mRNA_H-elongata_contig10383.323.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10383 3027..3756 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10383.323.1 ID=prot_H-elongata_contig10383.323.1|Name=mRNA_H-elongata_contig10383.323.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MIRRDMLRAMRHSLSPTEERVLRLRFGLEGGGKRAGALTFKEIGRKMELS
AEGIRQMALRAIAKLQDSDEANGLLLAYADLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007630RNA_pol_sigma70_r4
IPR036388WH-like_DNA-bd_sf
IPR013324RNA_pol_sigma_r3/r4-like