mRNA_H-elongata_contig99789.17299.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99789.17299.1
Unique NamemRNA_H-elongata_contig99789.17299.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99789.17299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99789contigH-elongata_contig99789:709..1205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99789.17299.1prot_H-elongata_contig99789.17299.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99789 763..1028 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931386.047474-UTR-H-elongata_contig99789:708..7621622931386.047474-UTR-H-elongata_contig99789:708..762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99789 709..762 -
1691679814.989606-UTR-H-elongata_contig99789:708..7621691679814.989606-UTR-H-elongata_contig99789:708..762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99789 709..762 -
1622931386.1149015-UTR-H-elongata_contig99789:1028..12051622931386.1149015-UTR-H-elongata_contig99789:1028..1205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99789 1029..1205 -
1691679815.0221367-UTR-H-elongata_contig99789:1028..12051691679815.0221367-UTR-H-elongata_contig99789:1028..1205Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99789 1029..1205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931386.0725884-CDS-H-elongata_contig99789:762..9221622931386.0725884-CDS-H-elongata_contig99789:762..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99789 763..922 -
1691679815.0004942-CDS-H-elongata_contig99789:762..9221691679815.0004942-CDS-H-elongata_contig99789:762..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99789 763..922 -
1622931386.0970132-CDS-H-elongata_contig99789:948..10281622931386.0970132-CDS-H-elongata_contig99789:948..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99789 949..1028 -
1691679815.0110636-CDS-H-elongata_contig99789:948..10281691679815.0110636-CDS-H-elongata_contig99789:948..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99789 949..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99789.17299.1

>prot_H-elongata_contig99789.17299.1 ID=prot_H-elongata_contig99789.17299.1|Name=mRNA_H-elongata_contig99789.17299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MNSVSDKSLRVYLKGSRARSHFLFSADHRQKRYHGLKSQVRYRHVIMRDD
KPNYPPCRNFKFSLLYCLVIASYMSTLHY*
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mRNA from alignment at H-elongata_contig99789:709..1205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99789.17299.1 ID=mRNA_H-elongata_contig99789.17299.1|Name=mRNA_H-elongata_contig99789.17299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig99789:709..1205- (Himanthalia elongata Himel1 dioecious)
CGGGCCAAAAGCTCTAGGGTTTTAACTACTGAAACAAAAATCACGCCATT
TTTTCCCTCTTTTCGCCTTAACAAATAACATTGGTGAATATTTTATTTTG
TATGCGCACGGAAGAACTTTTTACGGCAGGCAGCAGCCCAATCAAAGATC
GAAGGTAAGCTTACATACTACTTGTGTATGAACTCTGTATCAGACAAAAG
CCTGCGCGTTTACTTGAAAGGCAGCAGAGCCCGAAGCCATTTTTTGTTCT
CTGCTGAGTGACCTAGTTCCAAGGATCGAGGAGTCATCGGCAAAAAAGAT
ACCACGGCCTCAAAAGTCAAGTACGGTACAGGCATGTAATAATGCGCGAC
GATAAACCGAATTATCCTCCTTGCCGAAACTTTAAATTCAGCCTCTTATA
CTGTCTTGTAATCGCATCGTACATGTCCACTCTACACTACTAATAGTGGG
TGTGGGAAAAGAGGGGCGCACAATAATTATTGGTCCATGGGGTTACC
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Coding sequence (CDS) from alignment at H-elongata_contig99789:709..1205-

>mRNA_H-elongata_contig99789.17299.1 ID=mRNA_H-elongata_contig99789.17299.1|Name=mRNA_H-elongata_contig99789.17299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig99789:709..1205- (Himanthalia elongata Himel1 dioecious)
ATGAACTCTGTATCAGACAAAAGCCTGCGCGTTTACTTGAAAGGCAGCAG
AGCCCGAAGCCATTTTTTGTTCTCTGCTGAATGAACTCTGTATCAGACAA
AAGCCTGCGCGTTTACTTGAAAGGCAGCAGAGCCCGAAGCCATTTTTTGT
TCTCTGCTGATCATCGGCAAAAAAGATACCACGGCCTCAAAAGTCAAGTA
CGGTACAGGCATGTAATAATGCGCGACGATAAACCGAATTATCCTCCTTG
CCGAAACTTTAAATTCAGCCTCTTATACTGTCTTGTAATCGCATCGTACA
TGTCCACTCTACACTACTAATCATCGGCAAAAAAGATACCACGGCCTCAA
AAGTCAAGTACGGTACAGGCATGTAATAATGCGCGACGATAAACCGAATT
ATCCTCCTTGCCGAAACTTTAAATTCAGCCTCTTATACTGTCTTGTAATC
GCATCGTACATGTCCACTCTACACTACTAA
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