mRNA_H-elongata_contig99694.17296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99694.17296.1
Unique NamemRNA_H-elongata_contig99694.17296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A6H5KXT9_9PHAE (cwf21 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.910e-20
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 KVAEVRKEVEERENSGQKASLLVIKGKGEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARK 237
            KVAEVRK +EERE SGQKASL   KGK   G       MDSH+RD++K +DNRRMREAFGL +DYAAGEAFDEEAQ RK
Sbjct:   92 KVAEVRKGLEEREGSGQKASLP--KGKKGTGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 168
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BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: D7G1H6_ECTSI (cwf21 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.050e-20
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 KVAEVRKEVEERENSGQKASLLVIKGKGEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARK 237
            KVAEVRK +EERE SGQKASLL  K KG    XXX   MDSH+RD++K +DNRRMREAFGL +DYAAGEAFDEEAQ RK
Sbjct:  123 KVAEVRKGLEEREGSGQKASLLKGK-KGXXXXXXXAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 200
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BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: G4Z8N6_PHYSP (cwf21 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z8N6_PHYSP)

HSP 1 Score: 52.8 bits (125), Expect = 3.690e-6
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   22 EVEERENSGQKASLLVIKGKGEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKK 240
            E++E+    ++  L  +    + GG     A  SH R  +KEE+N+R+++AFG+  DY AGE+FD EAQ R++
Sbjct:   92 EIQEKVKRERERLLARLNEASDRGGEKAKDAESSHARQKRKEEENKRIKDAFGIATDYVAGESFDPEAQERRR 164
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BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A3F2RNF5_9STRA (cwf21 domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNF5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.430e-6
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   22 EVEERENSGQKASLLVIKGKGEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEAR 249
            E++++    ++  L  + G GE  G     A  SH R  +KEE+N R++ AFG+  DY AGE+FD E Q ++++ R
Sbjct:   91 EIQDKVKRERERLLARLNGDGEKRGEKRKDAESSHARQKRKEEENARLKSAFGIATDYVAGESFDPEMQKKRRQER 166
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BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A3R7J027_9STRA (cwf21 domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J027_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.540e-6
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   22 EVEERENSGQKASLLVIKGKGEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEAR 249
            E++++    ++  L  + G GE  G     A  SH R  +KEE+N R++ AFG+  DY AGE+FD E Q ++++ R
Sbjct:   91 EIQDKVKRERERLLARLNGDGEKRGEERKDAESSHARQKRKEEENARLKSAFGIATDYVAGESFDPEMQEKRRQER 166
[Close]
BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A0W8DC02_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DC02_PHYNI)

HSP 1 Score: 50.8 bits (120), Expect = 8.690e-6
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  121 SHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEARK 252
            +H R  +KEEDN+R+++AFG+  DY AGE+FD E Q R+++ RK
Sbjct:   95 THARQKRKEEDNKRIKDAFGIATDYVAGESFDPEMQERRRQERK 138
[Close]
BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A8K1CKR8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKR8_PYTOL)

HSP 1 Score: 51.6 bits (122), Expect = 1.190e-5
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  121 SHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEAR 249
            +H R  +KEE+NRRM+EAFG+ ED+  GE+FD E QA+++E R
Sbjct:  123 THARAQRKEEENRRMKEAFGIAEDHVPGESFDPEMQAKRREER 165
[Close]
BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A6A3S863_9STRA (cwf21 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S863_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   82 GEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEARK 252
            G+ G      A  SH R  +KEE+NRR+++AF +  DY AGE+FD EAQ R+++ RK
Sbjct:  112 GDRGREKAKDAESSHARQKRKEEENRRIKDAFRIATDYVAGESFDPEAQERRRQERK 168
[Close]
BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: V9E3X3_PHYPR (cwf21 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9E3X3_PHYPR)

HSP 1 Score: 51.6 bits (122), Expect = 1.210e-5
Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   22 EVEERENSGQKASLLVIKGKGEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEARK 252
            E++++    ++  L  +   G+ G      +  +H R  +KEEDN+R+++AFG+  DY AGE+FD E Q R+++ RK
Sbjct:   92 EIQDKVKRERERLLARLNDAGDRGRQSAKDSESTHARQKRKEEDNKRIKDAFGIATDYVAGESFDPEMQERRRQERK 168
[Close]
BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Match: A0A6A4A5J2_9STRA (cwf21 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4A5J2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.230e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   82 GEVGGXXXXXAMDSHVRDMQKEEDNRRMREAFGLKEDYAAGEAFDEEAQARKKEARK 252
            G+ G      A  SH R  +KEE+NRR+++AF +  DY AGE+FD EAQ R+++ RK
Sbjct:  112 GDRGREKAKDAESSHARQKRKEEENRRIKDAFRIATDYVAGESFDPEAQERRRQERK 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99694.17296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KXT9_9PHAE3.910e-2069.62cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G1H6_ECTSI7.050e-2073.42cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
G4Z8N6_PHYSP3.690e-638.36cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A3F2RNF5_9STRA6.430e-636.84cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A3R7J027_9STRA6.540e-636.84cwf21 domain-containing protein n=2 Tax=Phytophtho... [more]
A0A0W8DC02_PHYNI8.690e-652.27Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A8K1CKR8_PYTOL1.190e-555.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3S863_9STRA1.210e-547.37cwf21 domain-containing protein n=4 Tax=Phytophtho... [more]
V9E3X3_PHYPR1.210e-535.06cwf21 domain-containing protein n=8 Tax=Phytophtho... [more]
A0A6A4A5J2_9STRA1.230e-547.37cwf21 domain-containing protein n=2 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99694contigH-elongata_contig99694:1637..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.8e-17
Seed eggNOG ortholog2880.D7G1H6
KEGG koko:K06110,ko:K13172
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0009889,GO:0009909,GO:0009987,GO:0010219,GO:0010220,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019918,GO:0031323,GO:0031326,GO:0032259,GO:0032991,GO:0034641,GO:0034969,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043985,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048580,GO:0048583,GO:0048584,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903506,GO:1990904,GO:2000026,GO:2000112,GO:2000241,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG1869@1,KOG1869@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931385.473138-CDS-H-elongata_contig99694:1636..18911622931385.473138-CDS-H-elongata_contig99694:1636..1891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99694 1637..1891 +
1691679814.7991831-CDS-H-elongata_contig99694:1636..18911691679814.7991831-CDS-H-elongata_contig99694:1636..1891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99694 1637..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99694.17296.1prot_H-elongata_contig99694.17296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99694 1637..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99694.17296.1

>prot_H-elongata_contig99694.17296.1 ID=prot_H-elongata_contig99694.17296.1|Name=mRNA_H-elongata_contig99694.17296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
KVAEVRKEVEERENSGQKASLLVIKGKGEVGGGGGGGAMDSHVRDMQKEE
DNRRMREAFGLKEDYAAGEAFDEEAQARKKEARKR
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mRNA from alignment at H-elongata_contig99694:1637..1891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99694.17296.1 ID=mRNA_H-elongata_contig99694.17296.1|Name=mRNA_H-elongata_contig99694.17296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig99694:1637..1891+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCCGAAGTGCGGAAGGAAGTAGAGGAGAGAGAAAATAGCGGTCA
GAAGGCGTCTTTGCTCGTTATCAAAGGGAAGGGAGAGGTGGGAGGAGGCG
GGGGCGGGGGCGCGATGGACTCCCACGTGCGCGACATGCAGAAGGAAGAA
GACAACCGCCGGATGCGAGAGGCGTTCGGGCTGAAGGAGGACTACGCAGC
CGGGGAGGCGTTTGACGAAGAAGCTCAGGCGCGAAAGAAAGAGGCTCGGA
AGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig99694:1637..1891+

>mRNA_H-elongata_contig99694.17296.1 ID=mRNA_H-elongata_contig99694.17296.1|Name=mRNA_H-elongata_contig99694.17296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig99694:1637..1891+ (Himanthalia elongata Himel1 dioecious)
AAGGTGGCCGAAGTGCGGAAGGAAGTAGAGGAGAGAGAAAATAGCGGTCA
GAAGGCGTCTTTGCTCGTTATCAAAGGGAAGGGAGAGGTGGGAGGAGGCG
GGGGCGGGGGCGCGATGGACTCCCACGTGCGCGACATGCAGAAGGAAGAA
GACAACCGCCGGATGCGAGAGGCGTTCGGGCTGAAGGAGGACTACGCAGC
CGGGGAGGCGTTTGACGAAGAAGCTCAGGCGCGAAAGAAAGAGGCTCGGA
AGAGGAAGGTGGCCGAAGTGCGGAAGGAAGTAGAGGAGAGAGAAAATAGC
GGTCAGAAGGCGTCTTTGCTCGTTATCAAAGGGAAGGGAGAGGTGGGAGG
AGGCGGGGGCGGGGGCGCGATGGACTCCCACGTGCGCGACATGCAGAAGG
AAGAAGACAACCGCCGGATGCGAGAGGCGTTCGGGCTGAAGGAGGACTAC
GCAGCCGGGGAGGCGTTTGACGAAGAAGCTCAGGCGCGAAAGAAAGAGGC
TCGGAAGAGG
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