mRNA_H-elongata_contig99687.17294.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.960e-34 Identity = 76/177 (42.94%), Postives = 109/177 (61.58%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTEEA--TEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNT 510
DVIGLQET+R G IT Y + +SG G K K+G HGVG+A+KE + + + +EC S RL+K R+ I ++ +TFVV YAPTE A T G K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L+NT
Sbjct: 13 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINT 187
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.880e-32 Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G I Y + +SG G K K+G HGVG+A+KE + ++ +EC S RL+K R+ I ++ +TFVV YAPTE T G K + AL + V R++ +L D N RTG+R GG D+KVLGAYGRD+++ NG+ L L D++ +L NT F
Sbjct: 13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYF 189
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.430e-32 Identity = 76/179 (42.46%), Postives = 104/179 (58.10%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G I Y + +SG G K K+G HGVG A+KE + ++ +EC S RL+K R+ I ++ +TFVV YAPTE T G K + AL + V R++ +L D N RTG+R G D K++GAYGRD+++ NG+ L L DS+L+L NT F
Sbjct: 13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRVGC--CDGKMMGAYGRDIMTNNGERLLGLASDSQLSLTNTYF 189
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 130 bits (328), Expect = 4.910e-32 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTEEA--TEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G IT Y + +SG G K K+G HGVG+A+KE + + + +EC S RL+K R+ I ++ +TFVV YAPTE A T G K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L+NT F
Sbjct: 13 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYF 189
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 130 bits (328), Expect = 4.960e-32 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTEEA--TEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G IT Y + +SG G K K+G HGVG+A+KE + + + +EC S RL+K R+ I ++ +TFVV YAPTE A T G K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L+NT F
Sbjct: 125 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYF 301
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.060e-31 Identity = 76/179 (42.46%), Postives = 107/179 (59.78%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVI LQET+R G I Y + +SG G K K+G HGVG+A+KE + ++ +EC S RL+KAR+ I ++ +TFVV YAPTE T G K + AL + V R++ +L D N RTG+R EG D+K++GAYGRD+++ NG+ L L D++L+L NT F
Sbjct: 13 DVIELQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTGRRREGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 189
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.350e-31 Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G I Y + +SG G K K+G HGVG+A+KE + ++ +EC S RL+K R+ I ++ +TF+V YAPTE TEG K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L NT F
Sbjct: 210 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 386
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.360e-31 Identity = 76/179 (42.46%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G I Y +SG G KGK G HGVG+A+KE + ++ +EC S RL+K R+ I ++ +TFVV YAPTE T G K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L NT F
Sbjct: 13 DVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 189
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 127 bits (319), Expect = 7.690e-31 Identity = 75/179 (41.90%), Postives = 107/179 (59.78%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G I Y + +SG G K K+G HGVG+A+KE + ++ +EC S RL+K R+ I ++ +TFVV YAPTE T G K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L NT F
Sbjct: 13 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 189
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.080e-30 Identity = 75/179 (41.90%), Postives = 107/179 (59.78%), Query Frame = 1
Query: 1 DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVNKADKDKIAIECTSARLLKARISI-KSKFITFVVAYAPTE--EATEG----KKARYIAALKRIVSSVPDREYFFILTDTNTRTGKRGEGGGEADSKVLGAYGRDVLSENGQLLQCLTEDSKLALLNTLF 516
DVIGLQET+R G I Y + +SG G K K+G HGVG+A+KE + ++ +EC S RL+K R+ I ++ +TFVV YAPTE T G K + AL + V R++ +L D N RTG+R +G D+K++GAYGRD+++ NG+ L L D++L+L NT F
Sbjct: 692 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGC--CDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 868 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99687.17294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig99687.17294.1 >prot_H-elongata_contig99687.17294.1 ID=prot_H-elongata_contig99687.17294.1|Name=mRNA_H-elongata_contig99687.17294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp DVIGLQETKRGGVSEITASEYRVYFSGDCNGVKGKKGQHGVGLAVKEDIVback to top mRNA from alignment at H-elongata_contig99687:1634..2149- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig99687.17294.1 ID=mRNA_H-elongata_contig99687.17294.1|Name=mRNA_H-elongata_contig99687.17294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig99687:1634..2149- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig99687:1634..2149- >mRNA_H-elongata_contig99687.17294.1 ID=mRNA_H-elongata_contig99687.17294.1|Name=mRNA_H-elongata_contig99687.17294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig99687:1634..2149- (Himanthalia elongata Himel1 dioecious)back to top |