mRNA_H-elongata_contig99678.17293.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99678.17293.1
Unique NamemRNA_H-elongata_contig99678.17293.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: D7G227_ECTSI (Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G227_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 7.360e-42
Identity = 64/82 (78.05%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITPPRETKEKLWDESSKQLFAEMKEV 246
            +G+KGI +IAGD++PIDVISHMAYYCEEQG+NYIYVPSKVDLG AAKTKRPTSCV ITPPRETK+ +WD  +K+LFA++KEV
Sbjct:   80 QGRKGICVIAGDISPIDVISHMAYYCEEQGVNYIYVPSKVDLGAAAKTKRPTSCVLITPPRETKDSVWDPVTKELFADLKEV 161          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: A0A0W0DF42_CANGB (Ribonucloprotein n=2 Tax=Candida glabrata TaxID=5478 RepID=A0A0W0DF42_CANGB)

HSP 1 Score: 90.5 bits (223), Expect = 2.290e-21
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITPPRETKEKLWDESSKQLFAEM-KEV 246
            KG+KG+ +IAGD++P DVISH+   CE+ G+ Y++VPSK DLG+A+ TKRPTS +FI P    K+K  +E  K+ + E+ KEV
Sbjct:   63 KGEKGLVVIAGDISPADVISHIPVLCEDHGVPYLFVPSKQDLGSASATKRPTSVIFIVPGSNKKDKSKEEEYKESYNEVVKEV 145          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: A0A836CPU2_9STRA (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.210e-21
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   10 KGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITP 177
            KG+ +IAGD++PIDVI+H+  YCEE  + Y+YVPSK DLG AA TKRPTSCV ITP
Sbjct:   71 KGVCVIAGDISPIDVITHLPVYCEENEVRYMYVPSKQDLGAAASTKRPTSCVLITP 126          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: I4Y9J3_WALMC (Ribonucloprotein n=2 Tax=Wallemia mellicola TaxID=1708541 RepID=I4Y9J3_WALMC)

HSP 1 Score: 90.1 bits (222), Expect = 5.740e-21
Identity = 44/88 (50.00%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFIT-----PPRETKEKLWD--ESSKQLFAEMKE 243
            KG+KGI I+AG+++PID+++H+   CEE GI+YIY+PSK +LG A+ TKRPTSC+ IT     P +  ++++ D  E  KQL+AE++E
Sbjct:   73 KGEKGIVILAGNISPIDILTHIPILCEESGISYIYIPSKEELGEASGTKRPTSCMMITQKSSKPKKGQEDEIKDKVEEFKQLYAELQE 160          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: A0A1Y2C7P2_9FUNG (Ribonucloprotein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C7P2_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 6.790e-21
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITPPRETKEKL----WDESSKQLFAEMKEV 246
            KG KGI ++AGD++PIDVI+H+   CEE  + YIY PSK DLG A+ TKRPTSCV +  P   K K     + ES  +L  E+KE+
Sbjct:   84 KGSKGIVVLAGDISPIDVITHLPVLCEENSVPYIYAPSKQDLGAASNTKRPTSCVMVVTPSSLKNKEAAGEYKESFDELNTEVKEL 169          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: A0A024TAU2_9STRA (Ribonucloprotein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TAU2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.510e-21
Identity = 43/84 (51.19%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITPPRE--TKEKLWDESSKQLFAEMKEV 246
            KG+KG+ +IAGD++PIDVISH+   CE   I+Y++ PSKVDLG +A +KRPTSC+ ITP +     ++ +DE    L AE+K+V
Sbjct:   62 KGEKGLCVIAGDISPIDVISHIPVLCESNDISYVFTPSKVDLGASASSKRPTSCIMITPGKHGFNVQETYDE----LLAEVKKV 141          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: A0A5J4X4M1_9EUKA (Ribonucloprotein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4X4M1_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 9.600e-21
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFIT--PPRETKEKLWDESSKQLFAEMKEV 246
            KGKKGI I+AGDV+PIDVISH+  YCEE  I YI+V SK +LG AA TKRPTSCV     PP +  EK+ ++   Q+ +E+ ++
Sbjct:   95 KGKKGICILAGDVSPIDVISHLPVYCEENNIPYIFVASKAELGLAASTKRPTSCVLAQTLPPDKLPEKI-EKKWNQIVSELAQI 177          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: K3WNU8_GLOUD (Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID=K3WNU8_GLOUD)

HSP 1 Score: 88.6 bits (218), Expect = 1.210e-20
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITPPRETKEKLWDESSKQLFAEMKEV 246
            KG+KG+ IIAGD++PIDVISH+   CEE  I Y++ PSKVDLG +A +KRPTSC+ ITP +     L  ++ ++L  E+K+V
Sbjct:   62 KGEKGVCIIAGDISPIDVISHIPVLCEENDIPYLFTPSKVDLGASALSKRPTSCILITPGKAGFNAL--DAYEELLEEVKQV 141          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: A0A5A8D548_CAFRO (Ribonucloprotein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D548_CAFRO)

HSP 1 Score: 89.0 bits (219), Expect = 1.510e-20
Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFIT 174
            KG KG+ ++AGD++P+DVISH+  +CEE G+NY++V SK +LG AAKTKRPTSCV +T
Sbjct:   87 KGTKGLCVLAGDISPMDVISHLPVFCEELGVNYVFVTSKAELGEAAKTKRPTSCVLLT 144          
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Match: F0YBI4_AURAN (Ribonucloprotein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBI4_AURAN)

HSP 1 Score: 87.0 bits (214), Expect = 1.980e-20
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKRPTSCVFITP 177
            KG  G+ IIAGD++PIDVI H+  +CEE+ + YIYVPSK DLG AA TKRPTSCV ++P
Sbjct:   50 KGATGLCIIAGDISPIDVICHLPIFCEEKSVPYIYVPSKQDLGFAALTKRPTSCVMVSP 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99678.17293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G227_ECTSI7.360e-4278.05Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A0W0DF42_CANGB2.290e-2151.81Ribonucloprotein n=2 Tax=Candida glabrata TaxID=54... [more]
A0A836CPU2_9STRA5.210e-2167.86Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303... [more]
I4Y9J3_WALMC5.740e-2150.00Ribonucloprotein n=2 Tax=Wallemia mellicola TaxID=... [more]
A0A1Y2C7P2_9FUNG6.790e-2151.16Ribonucloprotein n=1 Tax=Rhizoclosmatium globosum ... [more]
A0A024TAU2_9STRA8.510e-2151.19Ribonucloprotein n=5 Tax=Aphanomyces TaxID=100860 ... [more]
A0A5J4X4M1_9EUKA9.600e-2154.76Ribonucloprotein n=1 Tax=Streblomastix strix TaxID... [more]
K3WNU8_GLOUD1.210e-2052.44Ribonucloprotein n=5 Tax=Oomycota TaxID=4762 RepID... [more]
A0A5A8D548_CAFRO1.510e-2062.07Ribonucloprotein n=2 Tax=Cafeteria roenbergensis T... [more]
F0YBI4_AURAN1.980e-2064.41Ribonucloprotein (Fragment) n=1 Tax=Aureococcus an... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99678contigH-elongata_contig99678:953..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog2880.D7G227
Preferred nameNHP2
KEGG koko:K02449,ko:K11129,ko:K11321
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000469,GO:0000470,GO:0000491,GO:0000492,GO:0000723,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0015934,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016604,GO:0018130,GO:0019438,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042273,GO:0042592,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0051276,GO:0060249,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071826,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090305,GO:0090501,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.rRNA pseudouridine synthesis
EggNOG OGsCOG1358@1,KOG3167@2759
EC2.7.11.22
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNHP2 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-11_003590.1
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931385.2922196-CDS-H-elongata_contig99678:952..10531622931385.2922196-CDS-H-elongata_contig99678:952..1053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99678 953..1053 +
1691679814.7485306-CDS-H-elongata_contig99678:952..10531691679814.7485306-CDS-H-elongata_contig99678:952..1053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99678 953..1053 +
1622931385.3127067-CDS-H-elongata_contig99678:1226..13711622931385.3127067-CDS-H-elongata_contig99678:1226..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99678 1227..1371 +
1691679814.7601118-CDS-H-elongata_contig99678:1226..13711691679814.7601118-CDS-H-elongata_contig99678:1226..1371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99678 1227..1371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99678.17293.1prot_H-elongata_contig99678.17293.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99678 953..1371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99678.17293.1

>prot_H-elongata_contig99678.17293.1 ID=prot_H-elongata_contig99678.17293.1|Name=mRNA_H-elongata_contig99678.17293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
KGKKGIAIIAGDVTPIDVISHMAYYCEEQGINYIYVPSKVDLGTAAKTKR
PTSCVFITPPRETKEKLWDESSKQLFAEMKEV
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mRNA from alignment at H-elongata_contig99678:953..1371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99678.17293.1 ID=mRNA_H-elongata_contig99678.17293.1|Name=mRNA_H-elongata_contig99678.17293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=419bp|location=Sequence derived from alignment at H-elongata_contig99678:953..1371+ (Himanthalia elongata Himel1 dioecious)
AAAGGAAAAAAAGGGATTGCCATTATCGCGGGAGACGTTACCCCGATCGA CGTTATCTCCCACATGGCGTATTACTGCGAAGAGCAAGGGATCAATTACA TGTGAGACAAAAACCAAAAACAGAGGCAAACCTTTTTTGTCAATCTGTTG TATTATAGAAGATGTAATGCTGTTTTGGGTGGCGGGGCGGGTTGTGCGTA CGTATCGCGGTCGATATTTCAAGACTTGAAAAGAGCATGGCCTTCTCTTT TTTCGCGTGTGTCTGAATCAACAGTTATGTGCCATCAAAGGTCGACCTCG GAACAGCGGCGAAGACAAAGCGCCCTACTTCTTGCGTCTTCATAACGCCT CCACGGGAAACGAAGGAAAAACTTTGGGACGAAAGCTCCAAGCAGCTTTT TGCCGAGATGAAGGAAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig99678:953..1371+

>mRNA_H-elongata_contig99678.17293.1 ID=mRNA_H-elongata_contig99678.17293.1|Name=mRNA_H-elongata_contig99678.17293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig99678:953..1371+ (Himanthalia elongata Himel1 dioecious)
AAAGGAAAAAAAGGGATTGCCATTATCGCGGGAGACGTTACCCCGATCGA
CGTTATCTCCCACATGGCGTATTACTGCGAAGAGCAAGGGATCAATTACA
TAAAGGAAAAAAAGGGATTGCCATTATCGCGGGAGACGTTACCCCGATCG
ACGTTATCTCCCACATGGCGTATTACTGCGAAGAGCAAGGGATCAATTAC
ATTTATGTGCCATCAAAGGTCGACCTCGGAACAGCGGCGAAGACAAAGCG
CCCTACTTCTTGCGTCTTCATAACGCCTCCACGGGAAACGAAGGAAAAAC
TTTGGGACGAAAGCTCCAAGCAGCTTTTTGCCGAGATGAAGGAAGTCTTA
TGTGCCATCAAAGGTCGACCTCGGAACAGCGGCGAAGACAAAGCGCCCTA
CTTCTTGCGTCTTCATAACGCCTCCACGGGAAACGAAGGAAAAACTTTGG
GACGAAAGCTCCAAGCAGCTTTTTGCCGAGATGAAGGAAGTC
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