mRNA_H-elongata_contig99617.17290.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99617.17290.1
Unique NamemRNA_H-elongata_contig99617.17290.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: D8LMK5_ECTSI (Similar to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.650e-19
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   13 FPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQVC 156
            FPVLGLLPKQET+AW+F+   P+ DGRGVKVAIFDTGVDPAASGLQVC
Sbjct:   16 FPVLGLLPKQETEAWEFLKANPQLDGRGVKVAIFDTGVDPAASGLQVC 63
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: A0A8J1V0F7_OWEFU (Tripeptidyl-peptidase 2 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1V0F7_OWEFU)

HSP 1 Score: 80.1 bits (196), Expect = 3.450e-16
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   13 FPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQV 153
            FP+ GLLPK+ET AW F++K+PEYDGRG  VAI DTGVDP A GLQV
Sbjct:   28 FPIFGLLPKKETNAWSFLSKYPEYDGRGTLVAIMDTGVDPGAPGLQV 74
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: A0A2B4S9W4_STYPI (Tripeptidyl-peptidase 2 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S9W4_STYPI)

HSP 1 Score: 74.7 bits (182), Expect = 4.480e-16
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 NFPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQ 150
            +FP+ GLLPK+ET A  F+AK+PEYDGRG+ +A+FDTGVDP A GLQ
Sbjct:    8 DFPIHGLLPKRETGAERFLAKYPEYDGRGIVIAVFDTGVDPGAPGLQ 54
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: UPI0008F99B8A (tripeptidyl-peptidase 2 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F99B8A)

HSP 1 Score: 79.0 bits (193), Expect = 8.790e-16
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    7 ENFPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQV 153
            E FPV GLLPK+ET A+ F+ K+PEYDGRG  +AIFDTGVDPAA GLQV
Sbjct:    7 EEFPVWGLLPKKETGAYAFLNKYPEYDGRGTVIAIFDTGVDPAAPGLQV 55
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: R7TP14_CAPTE (Tripeptidyl-peptidase 2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TP14_CAPTE)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-15
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 KGENFPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQV 153
            + E+FPV GLLPK+ET AW FV K+P++DG+GV +A+ DTGVDP A GL+V
Sbjct:    5 ESESFPVFGLLPKKETGAWSFVGKYPDHDGKGVTIAVLDTGVDPGAPGLKV 55
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: A0A1D1UQI9_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UQI9_RAMVA)

HSP 1 Score: 76.3 bits (186), Expect = 1.460e-15
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   13 FPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQVCMT 162
            +P  GL+PK+ET A+DF+ K+P+YDGRG+K+AIFD+GVDP A GLQV  T
Sbjct:    6 YPFEGLIPKRETGAFDFLRKYPDYDGRGIKMAIFDSGVDPGAEGLQVTST 55
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: UPI00065BB4DC (tripeptidyl-peptidase 2 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065BB4DC)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-15
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   13 FPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQV 153
            FPV G+LPK+ET A  F+ KFPEYDGRGV +A+ DTGVDPAASGLQV
Sbjct:    8 FPVEGILPKKETGAVSFLTKFPEYDGRGVVIAVLDTGVDPAASGLQV 54
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: A0A397J5V6_9GLOM (Tripeptidyl-peptidase II n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J5V6_9GLOM)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-15
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   10 NFPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQV 153
            NFPV GLLPK+ET+A  F+ K+PEYDGRGV +AI DTGVDP A GLQ+
Sbjct:   11 NFPVHGLLPKEETEAATFIKKYPEYDGRGVVIAILDTGVDPGAVGLQI 58
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: UPI0009E5357F (tripeptidyl-peptidase 2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5357F)

HSP 1 Score: 73.2 bits (178), Expect = 3.370e-15
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   13 FPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQ 150
            FPV GLLPK+ET A  ++AK+PEYDGRG+ +A+FDTGVDP A GLQ
Sbjct:    9 FPVHGLLPKRETGADRYLAKYPEYDGRGIVIAVFDTGVDPGAPGLQ 54
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BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Match: A0A3M6TNJ5_POCDA (Tripeptidyl-peptidase 2 n=3 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TNJ5_POCDA)

HSP 1 Score: 76.3 bits (186), Expect = 7.800e-15
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   10 NFPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQ 150
            NFP+ GLLPK+ET A  F+AK+PEYDGRG+ +A+FDTGVDP A GLQ
Sbjct:    8 NFPIHGLLPKRETGADRFLAKYPEYDGRGIVIAVFDTGVDPGAPGLQ 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99617.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK5_ECTSI2.650e-1983.33Similar to tripeptidylpeptidase II n=2 Tax=Ectocar... [more]
A0A8J1V0F7_OWEFU3.450e-1672.34Tripeptidyl-peptidase 2 n=1 Tax=Owenia fusiformis ... [more]
A0A2B4S9W4_STYPI4.480e-1668.09Tripeptidyl-peptidase 2 n=2 Tax=Stylophora pistill... [more]
UPI0008F99B8A8.790e-1673.47tripeptidyl-peptidase 2 n=1 Tax=Bemisia tabaci Tax... [more]
R7TP14_CAPTE1.200e-1562.75Tripeptidyl-peptidase 2 n=1 Tax=Capitella teleta T... [more]
A0A1D1UQI9_RAMVA1.460e-1564.00Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
UPI00065BB4DC3.060e-1574.47tripeptidyl-peptidase 2 n=1 Tax=Aplysia californic... [more]
A0A397J5V6_9GLOM3.060e-1570.83Tripeptidyl-peptidase II n=1 Tax=Diversispora epig... [more]
UPI0009E5357F3.370e-1569.57tripeptidyl-peptidase 2-like n=1 Tax=Orbicella fav... [more]
A0A3M6TNJ5_POCDA7.800e-1570.21Tripeptidyl-peptidase 2 n=3 Tax=Pocillopora damico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99617contigH-elongata_contig99617:1355..1522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue6e-16
Seed eggNOG ortholog2880.D8LMK5
Preferred nameTPP2
KEGG koko:K01280
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0010883,GO:0010884,GO:0016020,GO:0016043,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032879,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0048518,GO:0050789,GO:0051259,GO:0051260,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1905952,GO:1905954,GO:1990904
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
EC3.4.14.10
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931385.0469406-CDS-H-elongata_contig99617:1354..15221622931385.0469406-CDS-H-elongata_contig99617:1354..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99617 1355..1522 -
1691679814.6814656-CDS-H-elongata_contig99617:1354..15221691679814.6814656-CDS-H-elongata_contig99617:1354..1522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99617 1355..1522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99617.17290.1prot_H-elongata_contig99617.17290.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99617 1355..1522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99617.17290.1

>prot_H-elongata_contig99617.17290.1 ID=prot_H-elongata_contig99617.17290.1|Name=mRNA_H-elongata_contig99617.17290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
KGENFPVLGLLPKQETQAWDFVAKFPEYDGRGVKVAIFDTGVDPAASGLQ
VCMTIS
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mRNA from alignment at H-elongata_contig99617:1355..1522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99617.17290.1 ID=mRNA_H-elongata_contig99617.17290.1|Name=mRNA_H-elongata_contig99617.17290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig99617:1355..1522- (Himanthalia elongata Himel1 dioecious)
AAGGGTGAGAATTTTCCGGTGTTGGGGCTGCTCCCTAAGCAGGAGACCCA
GGCGTGGGATTTCGTGGCGAAGTTCCCGGAATATGATGGGCGAGGGGTCA
AGGTGGCCATATTCGACACGGGCGTTGATCCTGCTGCTAGCGGGCTGCAG
GTGTGTATGACGATTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig99617:1355..1522-

>mRNA_H-elongata_contig99617.17290.1 ID=mRNA_H-elongata_contig99617.17290.1|Name=mRNA_H-elongata_contig99617.17290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig99617:1355..1522- (Himanthalia elongata Himel1 dioecious)
AAGGGTGAGAATTTTCCGGTGTTGGGGCTGCTCCCTAAGCAGGAGACCCA
GGCGTGGGATTTCGTGGCGAAGTTCCCGGAATATGATGGGCGAGGGGTCA
AGGTGGCCATATTCGACACGGGCGTTGATCCTGCTGCTAGCGGGCTGCAG
GTGTGTATGACGATTAGCAAGGGTGAGAATTTTCCGGTGTTGGGGCTGCT
CCCTAAGCAGGAGACCCAGGCGTGGGATTTCGTGGCGAAGTTCCCGGAAT
ATGATGGGCGAGGGGTCAAGGTGGCCATATTCGACACGGGCGTTGATCCT
GCTGCTAGCGGGCTGCAGGTGTGTATGACGATTAGC
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