mRNA_H-elongata_contig99529.17283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99529.17283.1
Unique NamemRNA_H-elongata_contig99529.17283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: D7FJX2_ECTSI (Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.210e-35
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPTAPGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYEK 303
            DST  +LVLNRTVTLKEA+GK+     KSRK++QA  RQAAEKEARK + P+EMFLS TDLYSAFDD+G+PT DK+ EPLSKSA+K+LKKEW+KQKKLYEK
Sbjct:  558 DSTPELLVLNRTVTLKEATGKSTVPKDKSRKEIQA--RQAAEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKSGEPLSKSAIKKLKKEWEKQKKLYEK 656
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: A0A6H5JZH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.100e-34
Identity = 73/101 (72.28%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPTAPGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYEK 303
            DST  +LVLNRTVTLKEA+GK+     KSRK++QA  RQAAEKEARK + P+EMFLS TDLYSAFDD+G+PT DK  EPLSKS++K+LKKEW+KQKKLYEK
Sbjct:  678 DSTPELLVLNRTVTLKEATGKSTVPKDKSRKEIQA--RQAAEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKAGEPLSKSSIKKLKKEWEKQKKLYEK 776
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: A0A7S3HDJ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDJ2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.950e-24
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPTAPGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYEKAA 309
            DST   LVLN TV LK++  K    P +SRK+ QA A   A+K AR ++ PEEMF SQTDLYSAFD +GIPT D   E +SKS  K+L+K+W+KQKKL+E A+
Sbjct:   56 DSTDKKLVLNMTVNLKDSKPKEAGMPNRSRKEEQAKA--LADKLARMSIAPEEMFKSQTDLYSAFDAEGIPTHDAAGEKISKSGYKKLRKDWEKQKKLFESAS 156
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: C5KVE2_PERM5 (Cysteinyl-tRNA synthetase, putative (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KVE2_PERM5)

HSP 1 Score: 96.7 bits (239), Expect = 7.690e-24
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPTAPGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYE 300
            D+T N L+ N TVTLKE+  K        R   +A A Q AEKEA+K +RPE+MF  QTD YS FD+ GIPT D   E L+KSA K+L KEW+KQ++LYE
Sbjct:    1 DTTPNQLICNLTVTLKESGLKKTEGKHADRSRKEAQAAQLAEKEAKKKIRPEDMFKGQTDKYSKFDEHGIPTHDAGGEKLTKSAYKKLHKEWEKQRRLYE 100
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: A0A7S3U5L5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5L5_9SPIT)

HSP 1 Score: 92.8 bits (229), Expect = 1.000e-21
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:   28 NRTVTLKEASGK---APTAPGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYE 300
            NR + LKE+  K   +  A G+SRKD QA  +Q AEKE++K L P++MFLSQTDLYS FD+ G+PT   + EPL KS +K+LK+EWDKQKK+YE
Sbjct:   61 NRIIGLKESGLKKEESKEAAGRSRKDEQA--KQLAEKESKKKLDPKKMFLSQTDLYSKFDEDGVPTNAADGEPLPKSRIKKLKQEWDKQKKVYE 152
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: W7TED8_9STRA (Glutamine-trna ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TED8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.390e-21
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPT---APGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYE 300
            D+T   LVLNR VTLKE+S K      A GK R   +  ARQ  EKEARKNL P++MF ++TD YSAFD+ GIPT D     LSKS VK+LKKEW+KQK+L++
Sbjct:  555 DTTSAKLVLNRVVTLKESSVKKDVSTGADGKGRSRKEEQARQLLEKEARKNLDPKDMFQAETDKYSAFDEDGIPTKDVEGILLSKSLVKKLKKEWEKQKRLFD 657
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: A0A7S2USR8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.220e-20
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:   19 LVLNRTVTLKEASGKAPTA-PGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYEK 303
            LV NRTVTL+E+  K  ++    SRK+ QA+  Q A K AR+N+ PE+ F SQTD YSAFD +G+PT DK+ EPLSKS +K+LKKE DKQ+KL+ K
Sbjct:  135 LVFNRTVTLRESGPKKESSGDNSSRKEQQAA--QLAAKAARENIAPEDFFKSQTDKYSAFDAEGLPTHDKDGEPLSKSMIKKLKKEQDKQRKLFNK 228
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: C5KE56_PERM5 (Glutamine--tRNA ligase n=5 Tax=Perkinsus TaxID=28000 RepID=C5KE56_PERM5)

HSP 1 Score: 95.5 bits (236), Expect = 1.220e-20
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPTAP--GKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYE 300
            DST + L  N TVTLKE+  K       G+SRK+ QA+  Q AEKEA+K +RPE+MF  QTD YS FD+ GIPT D   E L+KSA K+L KEW+KQ++LYE
Sbjct:  557 DSTADQLTCNLTVTLKESGLKKTEGKHAGRSRKEAQAA--QLAEKEAKKKIRPEDMFKEQTDKYSQFDESGIPTHDAAGEKLAKSAYKKLHKEWEKQRRLYE 656
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: A0A7J6SG79_PEROL (Glutamine--tRNA ligase n=9 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SG79_PEROL)

HSP 1 Score: 93.2 bits (230), Expect = 8.090e-20
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    1 DSTKNMLVLNRTVTLKEASGKAPTAP--GKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYEKAAQA 315
            DST   L  N TVTLKE+  K       G+SRK+ QA+  Q AEKEA+K +RP++MF  QTD YS FD+ GIPT D   E L+KSA K+L KEW+KQ++LY + A+A
Sbjct:  558 DSTPGDLACNLTVTLKESGLKKTEGKHAGRSRKEAQAA--QLAEKEAKKKIRPQDMFKDQTDKYSHFDENGIPTHDAAGEKLTKSAFKKLHKEWEKQRRLYYRRAEA 662
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BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Match: A0A813J454_POLGL (Glutamine--tRNA ligase n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J454_POLGL)

HSP 1 Score: 92.8 bits (229), Expect = 1.090e-19
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    4 STKNMLVLNRTVTLKEASGKAP---TAPGKSRKDVQASARQAAEKEARKNLRPEEMFLSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYE 300
            ST   LV NR V LKE S K     +A  +SRKD QA A  AAEK+A+KNL P++MF S+TDLYSAFDD+G+PT   +   + KS +K+LK+EWDKQKKL+E
Sbjct:  627 STPASLVFNRIVGLKENSHKPDKDKSAELRSRKDEQAKA--AAEKDAKKNLDPKQMFRSETDLYSAFDDEGVPTHAADGAAVPKSRIKKLKQEWDKQKKLFE 726
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99529.17283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJX2_ECTSI1.210e-3573.27Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JZH1_9PHAE1.100e-3472.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3HDJ2_9STRA2.950e-2456.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
C5KVE2_PERM57.690e-2454.00Cysteinyl-tRNA synthetase, putative (Fragment) n=1... [more]
A0A7S3U5L5_9SPIT1.000e-2157.45Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
W7TED8_9STRA1.390e-2157.28Glutamine-trna ligase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S2USR8_9STRA1.220e-2057.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
C5KE56_PERM51.220e-2055.88Glutamine--tRNA ligase n=5 Tax=Perkinsus TaxID=280... [more]
A0A7J6SG79_PEROL8.090e-2053.27Glutamine--tRNA ligase n=9 Tax=Perkinsus olseni Ta... [more]
A0A813J454_POLGL1.090e-1956.86Glutamine--tRNA ligase n=2 Tax=Polarella glacialis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99529contigH-elongata_contig99529:481..1117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D7FJX2
KEGG rclassRC00055,RC00523
KEGG koko:K01883,ko:K01885,ko:K01886
KEGG ReactionR03650,R03652,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.glutaminyl-tRNA aminoacylation
EggNOG OGsCOG0008@1,COG0215@1,KOG1148@2759,KOG2007@2759
EC6.1.1.16,6.1.1.17,6.1.1.18
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutaminyl-tRNA Synthetase
Ec32 orthologEc-10_000780.1
Exons2
Model size333
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99529.17283.1prot_H-elongata_contig99529.17283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99529 481..1102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931384.3125618-CDS-H-elongata_contig99529:480..7051622931384.3125618-CDS-H-elongata_contig99529:480..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99529 481..705 -
1691679814.362643-CDS-H-elongata_contig99529:480..7051691679814.362643-CDS-H-elongata_contig99529:480..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99529 481..705 -
1622931384.3330097-CDS-H-elongata_contig99529:1009..11021622931384.3330097-CDS-H-elongata_contig99529:1009..1102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99529 1010..1102 -
1691679814.3758354-CDS-H-elongata_contig99529:1009..11021691679814.3758354-CDS-H-elongata_contig99529:1009..1102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99529 1010..1102 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931384.3602958-UTR-H-elongata_contig99529:1102..11171622931384.3602958-UTR-H-elongata_contig99529:1102..1117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99529 1103..1117 -
1691679814.3837547-UTR-H-elongata_contig99529:1102..11171691679814.3837547-UTR-H-elongata_contig99529:1102..1117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99529 1103..1117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99529.17283.1

>prot_H-elongata_contig99529.17283.1 ID=prot_H-elongata_contig99529.17283.1|Name=mRNA_H-elongata_contig99529.17283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MLVLNRTVTLKEASGKAPTAPGKSRKDVQASARQAAEKEARKNLRPEEMF
LSQTDLYSAFDDKGIPTADKNHEPLSKSAVKRLKKEWDKQKKLYEKAAQA
EAHTA*
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mRNA from alignment at H-elongata_contig99529:481..1117-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99529.17283.1 ID=mRNA_H-elongata_contig99529.17283.1|Name=mRNA_H-elongata_contig99529.17283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=637bp|location=Sequence derived from alignment at H-elongata_contig99529:481..1117- (Himanthalia elongata Himel1 dioecious)
GACAGTACTAAGAATATGTTGGTGCTCAACCGAACCGTAACGCTCAAGGA
GGCTTCGGGCAAGGCACCGACGGCCCCGGGGAAGAGCCGCAAGGATGTTC
AGGCGAGCGTGTGTGCCGAAATAGGGAGAATTAACGATGTTGTTGCCATT
TTTTCTAAACGTCAGACTTGTTACGTACCATCTGGGGTCACACAGGATTC
CTTCTGTGGTGCTTGCCTTCATTGTTTATCCCGAGAAGGATTCAGCAGTC
CCTTTGGTGTACCCACGAAATATTCGTTCTTAACTTGTTGGGCATGATGT
GAGAGAAAAAAAAACAGTTTATGTGACTGCGCCGAGATTCGAACTCACGT
CACAATGTTTCGAGGTTTACCAACTGAGAGCCATCTTATGAACTATCAAC
GGCAAATTTCAGGCGCGTCAGGCGGCGGAAAAGGAAGCCCGGAAGAACCT
TCGACCCGAAGAAATGTTCCTGTCTCAGACCGACCTTTATTCCGCCTTCG
ATGACAAAGGGATCCCCACGGCGGACAAGAACCACGAGCCGTTGAGCAAG
AGCGCCGTCAAGAGGCTTAAGAAGGAGTGGGACAAGCAGAAGAAGCTCTA
CGAGAAAGCGGCCCAGGCCGAGGCCCATACCGCATAG
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Coding sequence (CDS) from alignment at H-elongata_contig99529:481..1117-

>mRNA_H-elongata_contig99529.17283.1 ID=mRNA_H-elongata_contig99529.17283.1|Name=mRNA_H-elongata_contig99529.17283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig99529:481..1117- (Himanthalia elongata Himel1 dioecious)
ATGTTGGTGCTCAACCGAACCGTAACGCTCAAGGAGGCTTCGGGCAAGGC
ACCGACGGCCCCGGGGAAGAGCCGCAAGGATGTTCAGGCGAGCATGTTGG
TGCTCAACCGAACCGTAACGCTCAAGGAGGCTTCGGGCAAGGCACCGACG
GCCCCGGGGAAGAGCCGCAAGGATGTTCAGGCGAGCGCGCGTCAGGCGGC
GGAAAAGGAAGCCCGGAAGAACCTTCGACCCGAAGAAATGTTCCTGTCTC
AGACCGACCTTTATTCCGCCTTCGATGACAAAGGGATCCCCACGGCGGAC
AAGAACCACGAGCCGTTGAGCAAGAGCGCCGTCAAGAGGCTTAAGAAGGA
GTGGGACAAGCAGAAGAAGCTCTACGAGAAAGCGGCCCAGGCCGAGGCCC
ATACCGCATAGGCGCGTCAGGCGGCGGAAAAGGAAGCCCGGAAGAACCTT
CGACCCGAAGAAATGTTCCTGTCTCAGACCGACCTTTATTCCGCCTTCGA
TGACAAAGGGATCCCCACGGCGGACAAGAACCACGAGCCGTTGAGCAAGA
GCGCCGTCAAGAGGCTTAAGAAGGAGTGGGACAAGCAGAAGAAGCTCTAC
GAGAAAGCGGCCCAGGCCGAGGCCCATACCGCATAG
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