mRNA_H-elongata_contig99345.17271.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 203 bits (517), Expect = 3.020e-56 Identity = 101/240 (42.08%), Postives = 147/240 (61.25%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ A LW RR+GH+N +SL++++ +GI + + DC C + KS Q HPK A Y G++ FQL + D +G FTP A GGFKY +K Q T+W V++++DK+C+ D+ +LF VIP R+ R DK ++T A++Q + I +FA+ NTP QIG +ER R ++V +L DS LPS LW ELM TA YL N P++ L TP+K L+G +A L HL+++G F
Sbjct: 570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAF 808
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 201 bits (511), Expect = 2.180e-55 Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ A LW RR+GH+N +SL++++ +GI + + DC C + KS Q HPK A Y G++ FQL + D +G FTP A GGFKY +K Q T+W V++++DK+C+ D+ +LF VIP R+ R DK ++T A++Q + I +FA+ NTP QIG +ER R ++V +L DS LPS LW ELM TA YL N P++ L TP K L+G +A L HL+++G F
Sbjct: 570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPNKALFGTDAHLGHLRVVGARAF 808
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.110e-55 Identity = 100/240 (41.67%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ +A LW RR+GH+N +SL++++ NG+ + + DC +C + KS Q HPK+ Y G+ + FQ D +G FTP A GGFKY +K Q T+W +++++D++C+ DS LF V+P G R+ R D ++T F+Q + I EFA+ NTPQQ+G +ER R ++V LL DS LP+ LW EL+ TA YL N +P++ L TP+K LYGK+A L HL++IG+ F
Sbjct: 283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTY-GVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 521
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 197 bits (501), Expect = 4.450e-54 Identity = 100/235 (42.55%), Postives = 145/235 (61.70%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKII 732
+ +A LW RR+GH+N +SL++++ NG+ + DC CA+ KS Q HPK+A Y + + FQL + D +G FTP A GGFKY +K Q T+W + +++DK+C+ DS LF V+P G + R D ++T F+Q + + I EFA+ NTPQQIG +ER R ++V LL DS LP+ LW EL+ TA YL +P++ L TP+K LYGK+A L HL++I
Sbjct: 523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATY-DVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWWELIQTAVYLSTRVPHAALQNGTPYKALYGKDAYLGHLRVI 756
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 192 bits (488), Expect = 2.450e-52 Identity = 99/241 (41.08%), Postives = 142/241 (58.92%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDK-SCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ A LW RR+GH+N +SL++++ +GI + + DC C + KS Q HPK A Y G++ FQL + D G FT GGFKY +K Q T+W V++++DK SC+ D +LF VIP R+ R K ++T A++Q + I +FA+ NTP QIG +ER R ++V +L DS LPS LW ELM TA YL N P++ L TP+K L+G +A L HL+++G F
Sbjct: 475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAF 714
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 189 bits (481), Expect = 9.210e-52 Identity = 97/240 (40.42%), Postives = 147/240 (61.25%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ +A LW RR+GH+N ++L++++ NG+ + + C +C + KS Q HPK+A Y G+ + FQ D +G F P A GG KY +K Q T+W +++++D++C+ DS LF V+P G R+ R D+ ++T F+Q + I EFA+ N PQQIG +ER R ++V LL DS LP+ LW EL+ TA YL N +P++ L TP+K LYGK+A L HL++IG+ F
Sbjct: 43 VESADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATY-GVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 278
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.230e-51 Identity = 96/240 (40.00%), Postives = 141/240 (58.75%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ A LW RR+GH+N +SL++++ +GI + + DC C + KS Q HPK A Y G++ FQL + D +G FTP A GGFKY +K Q T+W V++++DK+C+ D+ +LF VIP R+ R DK ++T A++Q + I +FA+ NTP QIG +ER R ++V +L DS LPS LW ELM TA YL N P++ L + +A L HL+++G F
Sbjct: 692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXXXXXFSTDAHLGHLRVVGARAF 930
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE) HSP 1 Score: 178 bits (452), Expect = 1.610e-47 Identity = 97/240 (40.42%), Postives = 141/240 (58.75%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ +A LW RR+GH+N +SL++++ NG+ + + DC +C + KS Q HPK+A Y G+ + FQ D +G FTP A GFK +K Q +DK+C+ S LF V+P G R+ R D+ ++T F+Q + I EFAA NTPQQIG ++R R ++V LL DS LP+ LW EL+ TA YL + +P++ L TP+K LYGK+A L HL++IG+ F
Sbjct: 638 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATY-GVLRPFQHVSVDTLGPFTPTALSGFKVATKFVDQ----------KDKACSEGSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIELEFAAPNTPQQIGPNDRARRTILNVVHCLLADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 866
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.090e-44 Identity = 98/257 (38.13%), Postives = 141/257 (54.86%), Query Frame = 1
Query: 7 TELAMNAMSNA----------QLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
TE MN N+ LW RRL H ++ +E G+ + C+ C ++KS Q HPK A++ + Q Q Y DL+G +P A GGF YVSK T +++R V ++ K A D+ + F IVIP G R+ R R+D G+YT + + + I QEF A TPQQ G+SER R ++V LL LP LW EL TA ++ N +P+ L+ ETP+ R++GK+A+L HL++IG+S F
Sbjct: 448 TEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAV-QPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAF 703
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE) HSP 1 Score: 167 bits (423), Expect = 1.260e-43 Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 1
Query: 28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQ---NFS----ETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
+ +A LW RR+GH+N + L++++ NG+ + + DC + + L + + FQ D +G F P A GGFKY +K Q T+W +++++DK C+ DS LF V+P G R+ R D+ ++T F+Q N S SI EFA+ NTPQQIG + R R ++V LL DS LP+ LW EL+ TA YL N +P++ L TP+K LYGK+A L HL++IG+ F
Sbjct: 586 VESADLWHRRMGHINGKRLDVLRKEPVNGVDYTGDVKDCH---LRRPAPLXXXXXXXXXXVLRPFQHVSVDTVGPFKPTALGGFKYATKFVEQQTKWEEIVLMKDKPCSVDSLALFNKGTVVPAGERIPCLRGDQGTEFTSAEFRQYCQNISIKLXNISIKLEFASPNTPQQIGANARAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 829 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig99345.17271.1 >prot_H-elongata_contig99345.17271.1 ID=prot_H-elongata_contig99345.17271.1|Name=mRNA_H-elongata_contig99345.17271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MNAMSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSback to top mRNA from alignment at H-elongata_contig99345:884..1630- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig99345.17271.1 ID=mRNA_H-elongata_contig99345.17271.1|Name=mRNA_H-elongata_contig99345.17271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig99345:884..1630- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig99345:884..1630- >mRNA_H-elongata_contig99345.17271.1 ID=mRNA_H-elongata_contig99345.17271.1|Name=mRNA_H-elongata_contig99345.17271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig99345:884..1630- (Himanthalia elongata Himel1 dioecious)back to top |