mRNA_H-elongata_contig99345.17271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99345.17271.1
Unique NamemRNA_H-elongata_contig99345.17271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 3.020e-56
Identity = 101/240 (42.08%), Postives = 147/240 (61.25%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            +  A LW RR+GH+N +SL++++    +GI +   + DC  C + KS Q  HPK A Y G++  FQL + D +G FTP A GGFKY +K   Q T+W  V++++DK+C+ D+ +LF    VIP   R+   R DK  ++T  A++Q   +  I  +FA+ NTP QIG +ER  R   ++V  +L DS LPS LW ELM TA YL N  P++ L   TP+K L+G +A L HL+++G   F
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAF 808          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.180e-55
Identity = 101/240 (42.08%), Postives = 146/240 (60.83%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            +  A LW RR+GH+N +SL++++    +GI +   + DC  C + KS Q  HPK A Y G++  FQL + D +G FTP A GGFKY +K   Q T+W  V++++DK+C+ D+ +LF    VIP   R+   R DK  ++T  A++Q   +  I  +FA+ NTP QIG +ER  R   ++V  +L DS LPS LW ELM TA YL N  P++ L   TP K L+G +A L HL+++G   F
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPNKALFGTDAHLGHLRVVGARAF 808          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 3.110e-55
Identity = 100/240 (41.67%), Postives = 149/240 (62.08%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            + +A LW RR+GH+N +SL++++    NG+ +   + DC +C + KS Q  HPK+  Y G+ + FQ    D +G FTP A GGFKY +K   Q T+W  +++++D++C+ DS  LF    V+P G R+   R D   ++T   F+Q   +  I  EFA+ NTPQQ+G +ER  R   ++V  LL DS LP+ LW EL+ TA YL N +P++ L   TP+K LYGK+A L HL++IG+  F
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTY-GVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 521          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 4.450e-54
Identity = 100/235 (42.55%), Postives = 145/235 (61.70%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKII 732
            + +A LW RR+GH+N +SL++++    NG+     + DC  CA+ KS Q  HPK+A Y  + + FQL + D +G FTP A GGFKY +K   Q T+W  + +++DK+C+ DS  LF    V+P G  +   R D   ++T   F+Q + +  I  EFA+ NTPQQIG +ER  R   ++V  LL DS LP+ LW EL+ TA YL   +P++ L   TP+K LYGK+A L HL++I
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATY-DVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWWELIQTAVYLSTRVPHAALQNGTPYKALYGKDAYLGHLRVI 756          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.450e-52
Identity = 99/241 (41.08%), Postives = 142/241 (58.92%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDK-SCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            +  A LW RR+GH+N +SL++++    +GI +   + DC  C + KS Q  HPK A Y G++  FQL + D  G FT    GGFKY +K   Q T+W  V++++DK SC+ D  +LF    VIP   R+   R  K  ++T  A++Q   +  I  +FA+ NTP QIG +ER  R   ++V  +L DS LPS LW ELM TA YL N  P++ L   TP+K L+G +A L HL+++G   F
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAF 714          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 9.210e-52
Identity = 97/240 (40.42%), Postives = 147/240 (61.25%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            + +A LW RR+GH+N ++L++++    NG+ +   +  C +C + KS Q  HPK+A Y G+ + FQ    D +G F P A GG KY +K   Q T+W  +++++D++C+ DS  LF    V+P G R+   R D+  ++T   F+Q   +  I  EFA+ N PQQIG +ER  R   ++V  LL DS LP+ LW EL+ TA YL N +P++ L   TP+K LYGK+A L HL++IG+  F
Sbjct:   43 VESADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATY-GVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 278          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.230e-51
Identity = 96/240 (40.00%), Postives = 141/240 (58.75%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            +  A LW RR+GH+N +SL++++    +GI +   + DC  C + KS Q  HPK A Y G++  FQL + D +G FTP A GGFKY +K   Q T+W  V++++DK+C+ D+ +LF    VIP   R+   R DK  ++T  A++Q   +  I  +FA+ NTP QIG +ER  R   ++V  +L DS LPS LW ELM TA YL N  P++ L         +  +A L HL+++G   F
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVY-GVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXXXXXFSTDAHLGHLRVVGARAF 930          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.610e-47
Identity = 97/240 (40.42%), Postives = 141/240 (58.75%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            + +A LW RR+GH+N +SL++++    NG+ +   + DC +C + KS Q  HPK+A Y G+ + FQ    D +G FTP A  GFK  +K   Q          +DK+C+  S  LF    V+P G R+   R D+  ++T   F+Q   +  I  EFAA NTPQQIG ++R  R   ++V  LL DS LP+ LW EL+ TA YL + +P++ L   TP+K LYGK+A L HL++IG+  F
Sbjct:  638 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATY-GVLRPFQHVSVDTLGPFTPTALSGFKVATKFVDQ----------KDKACSEGSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIELEFAAPNTPQQIGPNDRARRTILNVVHCLLADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 866          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.090e-44
Identity = 98/257 (38.13%), Postives = 141/257 (54.86%), Query Frame = 1
Query:    7 TELAMNAMSNA----------QLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQNFSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            TE  MN   N+           LW RRL H ++  +E        G+     +  C+ C ++KS Q  HPK A++  + Q  Q  Y DL+G  +P A GGF YVSK T +++R   V ++  K  A D+ + F   IVIP G R+ R R+D  G+YT + + +      I QEF A  TPQQ G+SER  R   ++V  LL    LP  LW EL  TA ++ N +P+  L+ ETP+ R++GK+A+L HL++IG+S F
Sbjct:  448 TEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAV-QPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQASLRHLRVIGSSAF 703          
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.260e-43
Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 1
Query:   28 MSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKSQQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRWTAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQ---NFS----ETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMELMLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF 747
            + +A LW RR+GH+N + L++++    NG+ +   + DC    + +   L          + + FQ    D +G F P A GGFKY +K   Q T+W  +++++DK C+ DS  LF    V+P G R+   R D+  ++T   F+Q   N S      SI  EFA+ NTPQQIG + R  R   ++V  LL DS LP+ LW EL+ TA YL N +P++ L   TP+K LYGK+A L HL++IG+  F
Sbjct:  586 VESADLWHRRMGHINGKRLDVLRKEPVNGVDYTGDVKDCH---LRRPAPLXXXXXXXXXXVLRPFQHVSVDTVGPFKPTALGGFKYATKFVEQQTKWEEIVLMKDKPCSVDSLALFNKGTVVPAGERIPCLRGDQGTEFTSAEFRQYCQNISIKLXNISIKLEFASPNTPQQIGANARAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAF 829          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99345.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE3.020e-5642.08Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE2.180e-5542.08Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE3.110e-5541.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE4.450e-5442.55Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.450e-5241.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE9.210e-5240.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.230e-5140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKW9_9PHAE1.610e-4740.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.090e-4438.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC75_9PHAE1.260e-4338.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99345contigH-elongata_contig99345:884..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score117.9
Seed ortholog evalue6.8e-24
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size729
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931382.6538355-CDS-H-elongata_contig99345:883..16121622931382.6538355-CDS-H-elongata_contig99345:883..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99345 884..1612 -
1691679813.536265-CDS-H-elongata_contig99345:883..16121691679813.536265-CDS-H-elongata_contig99345:883..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99345 884..1612 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931382.6701725-UTR-H-elongata_contig99345:1612..16301622931382.6701725-UTR-H-elongata_contig99345:1612..1630Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99345 1613..1630 -
1691679813.5484223-UTR-H-elongata_contig99345:1612..16301691679813.5484223-UTR-H-elongata_contig99345:1612..1630Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig99345 1613..1630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99345.17271.1prot_H-elongata_contig99345.17271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99345 884..1612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99345.17271.1

>prot_H-elongata_contig99345.17271.1 ID=prot_H-elongata_contig99345.17271.1|Name=mRNA_H-elongata_contig99345.17271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MNAMSNAQLWPRRLGHLNRRSLELMQWHNGNGITFDSTIADCDICAIEKS
QQLAHPKKAQYAGITQSFQLCYGDLMGSFTPEAYGGFKYVSKITHQFTRW
TAVLILEDKSCASDSFDLFATSIVIPCGGRVIRWRTDKEGKYTRKAFKQN
FSETSITQEFAATNTPQQIGVSERVCRIRSSMVVFLLVDSGLPSKLWMEL
MLTAAYLCNHMPYSGLDMETPFKRLYGKEATLSHLKIIGTSFF
back to top

mRNA from alignment at H-elongata_contig99345:884..1630-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99345.17271.1 ID=mRNA_H-elongata_contig99345.17271.1|Name=mRNA_H-elongata_contig99345.17271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig99345:884..1630- (Himanthalia elongata Himel1 dioecious)
AGTGCCACCGAGCTGGCGATGAACGCGATGTCCAACGCCCAACTTTGGCC CCGACGACTGGGCCATCTCAATAGAAGGAGCTTAGAACTCATGCAGTGGC ACAACGGCAACGGCATCACCTTCGACAGTACCATTGCGGACTGTGACATC TGCGCCATCGAGAAAAGTCAACAATTAGCTCATCCCAAGAAAGCTCAGTA TGCTGGGATCACCCAGTCTTTCCAGCTTTGTTACGGCGATCTCATGGGCT CTTTCACCCCCGAAGCCTACGGCGGTTTCAAATACGTCAGCAAGATCACC CACCAGTTCACCAGGTGGACCGCCGTCTTGATACTAGAAGACAAGAGCTG CGCCTCGGACTCCTTTGATCTATTTGCCACATCAATTGTCATCCCTTGCG GCGGTCGAGTCATTCGCTGGCGTACGGACAAAGAAGGGAAATATACGAGA AAAGCATTTAAGCAGAATTTCTCGGAAACAAGCATCACTCAGGAGTTTGC GGCCACCAACACGCCTCAGCAAATTGGCGTGTCCGAGCGTGTTTGCCGAA TCCGTTCCAGCATGGTTGTTTTCCTTCTCGTCGACAGTGGACTCCCGTCT AAGTTGTGGATGGAACTCATGCTCACTGCGGCTTACCTCTGTAATCATAT GCCATACTCTGGACTTGACATGGAAACGCCGTTCAAGCGGCTTTACGGCA AGGAGGCCACTTTGTCGCATCTCAAGATCATCGGCACTAGTTTTTTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig99345:884..1630-

>mRNA_H-elongata_contig99345.17271.1 ID=mRNA_H-elongata_contig99345.17271.1|Name=mRNA_H-elongata_contig99345.17271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig99345:884..1630- (Himanthalia elongata Himel1 dioecious)
ATGAACGCGATGTCCAACGCCCAACTTTGGCCCCGACGACTGGGCCATCT
CAATAGAAGGAGCTTAGAACTCATGCAGTGGCACAACGGCAACGGCATCA
CCTTCGACAGTACCATTGCGGACTGTGACATCTGCGCCATCGAGAAAAGT
CAACAATTAGCTCATCCCAAGAAAGCTCAGTATGCTGGGATCACCCAGTC
TTTCCAGCTTTGTTACGGCGATCTCATGGGCTCTTTCACCCCCGAAGCCT
ACGGCGGTTTCAAATACGTCAGCAAGATCACCCACCAGTTCACCAGGTGG
ACCGCCGTCTTGATACTAGAAGACAAGAGCTGCGCCTCGGACTCCTTTGA
TCTATTTGCCACATCAATTGTCATCCCTTGCGGCGGTCGAGTCATTCGCT
GGCGTACGGACAAAGAAGGGAAATATACGAGAAAAGCATTTAAGCAGAAT
TTCTCGGAAACAAGCATCACTCAGGAGTTTGCGGCCACCAACACGCCTCA
GCAAATTGGCGTGTCCGAGCGTGTTTGCCGAATCCGTTCCAGCATGGTTG
TTTTCCTTCTCGTCGACAGTGGACTCCCGTCTAAGTTGTGGATGGAACTC
ATGCTCACTGCGGCTTACCTCTGTAATCATATGCCATACTCTGGACTTGA
CATGGAAACGCCGTTCAAGCGGCTTTACGGCAAGGAGGCCACTTTGTCGC
ATCTCAAGATCATCGGCACTAGTTTTTTTATGAACGCGATGTCCAACGCC
CAACTTTGGCCCCGACGACTGGGCCATCTCAATAGAAGGAGCTTAGAACT
CATGCAGTGGCACAACGGCAACGGCATCACCTTCGACAGTACCATTGCGG
ACTGTGACATCTGCGCCATCGAGAAAAGTCAACAATTAGCTCATCCCAAG
AAAGCTCAGTATGCTGGGATCACCCAGTCTTTCCAGCTTTGTTACGGCGA
TCTCATGGGCTCTTTCACCCCCGAAGCCTACGGCGGTTTCAAATACGTCA
GCAAGATCACCCACCAGTTCACCAGGTGGACCGCCGTCTTGATACTAGAA
GACAAGAGCTGCGCCTCGGACTCCTTTGATCTATTTGCCACATCAATTGT
CATCCCTTGCGGCGGTCGAGTCATTCGCTGGCGTACGGACAAAGAAGGGA
AATATACGAGAAAAGCATTTAAGCAGAATTTCTCGGAAACAAGCATCACT
CAGGAGTTTGCGGCCACCAACACGCCTCAGCAAATTGGCGTGTCCGAGCG
TGTTTGCCGAATCCGTTCCAGCATGGTTGTTTTCCTTCTCGTCGACAGTG
GACTCCCGTCTAAGTTGTGGATGGAACTCATGCTCACTGCGGCTTACCTC
TGTAATCATATGCCATACTCTGGACTTGACATGGAAACGCCGTTCAAGCG
GCTTTACGGCAAGGAGGCCACTTTGTCGCATCTCAAGATCATCGGCACTA
GTTTTTTT
back to top