mRNA_H-elongata_contig99312.17268.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99312.17268.1
Unique NamemRNA_H-elongata_contig99312.17268.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: A0A6H5L9L5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L5_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.040e-31
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    4 FDAFNPQWKTARRSTFVREMMRGAASALAFMHEAGVVHRSLGAPSLRVNTLDERFSRQVEVLLSDFGFACRLSE 225
            FDAFNP  +T RR+ FV++MMRGA +ALAFMHE+GVVHRSLGAPSLRVNTLDER+ RQ+EVLLSDFGFA RLSE
Sbjct:  235 FDAFNPTARTKRRAAFVKQMMRGATNALAFMHESGVVHRSLGAPSLRVNTLDERYPRQLEVLLSDFGFATRLSE 308
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: A0A2P6VES5_9CHLO (ATP binding n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VES5_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 2.940e-8
Identity = 28/61 (45.90%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   40 RSTFVREMMRGAASALAFMHEAGVVHRSLGAPSLRVNTLDERFSRQVEVLLSDFGFACRLS 222
            R   +R + RGA  ALA++HEAGVVH +LG+ S+ ++T D+R +++V V L +FGFA +++
Sbjct:  305 RWRMLRAITRGALQALAYVHEAGVVHGALGSGSIMLSTFDDRSAQRVVVKLDNFGFARQIT 365
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: E1Z7N3_CHLVA (Protein kinase domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z7N3_CHLVA)

HSP 1 Score: 57.8 bits (138), Expect = 5.460e-8
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   40 RSTFVREMMRGAASALAFMHEAGVVHRSLGAPSLRVNTLDERFSRQVEVLLSDFGFACRLS 222
            R+  +R + RGA  ALA+ HEAGVVH +LG+ S+ ++T D+R + ++ V L +FGFA ++S
Sbjct:  265 RARMLRAIARGALQALAYCHEAGVVHGALGSGSVMLSTFDDRSAARLIVKLDNFGFARKVS 325
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: A0A7S0F1J5_9CRYP (Hypothetical protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1J5_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 5.500e-8
Identity = 24/59 (40.68%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   49 FVREMMRGAASALAFMHEAGVVHRSLGAPSLRVNTLDERFSRQVEVLLSDFGFACRLSE 225
            +++ +M+ + SAL F+HE G+VHRSLG+ S+ ++T++     Q++V + DFGFA R+++
Sbjct:  264 YLKRLMKESVSALVFLHERGIVHRSLGSSSISLSTIEFTEVNQLQVNIRDFGFAARVAK 322
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: A0A5J4Z0Z3_PORPP (Calcium/calmodulin-dependent protein kinase type 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0Z3_PORPP)

HSP 1 Score: 57.4 bits (137), Expect = 7.430e-8
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:    1 FFDAFNPQWKTARRSTFVREMMRGAASALAFMHEAGVVHRSLGAPSLRVNTLDERFSRQVEVLLSDFGFACRLSE 225
            + D   P     R+  F+ +++  A  A+ F+H+ G+VHRSLG  SL VNTLDE      +  + D GFA +LSE
Sbjct:  220 YLDFVFPDLAFRRKKLFLIKLISEALEAVGFLHDRGIVHRSLGPASLLVNTLDETTPTLFDCKVRDLGFAQQLSE 294
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: A0A7S2Y9Q7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y9Q7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.790e-5
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   19 PQWKTARRSTFVREMMRGAASALAFMHEAGVVHRSLGAPSLRVN--TLDER--------FSRQVEVLLSDFGFA 210
            P W+T R +  ++ M++GA SALA +HE G+VHRSLG  S+ ++  T D+R         +  + V LSDFGFA
Sbjct:  125 PPWQT-RANYVIKGMVKGAISALADIHEQGLVHRSLGRTSIILSSKTQDKREAVSVYATMTSNLIVKLSDFGFA 197
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BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Match: A0A7S3C622_9VIRI (Hypothetical protein (Fragment) n=2 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C622_9VIRI)

HSP 1 Score: 49.7 bits (117), Expect = 3.830e-5
Identity = 25/59 (42.37%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   52 VREMMRGAASALAFMHEAGVVHRSLGAPSLRVNTLDERFSRQ-VEVLLSDFGFACRLSE 225
            +RE++RGA  A+AF+H  G+VHR+L A SL V ++D+R +   + VL+++ GF+  L +
Sbjct:  252 LRELVRGAVGAVAFVHAGGIVHRALSAESLLVVSVDQRGAPPTLRVLVANLGFSAVLPD 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99312.17268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L9L5_9PHAE8.040e-3179.73Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A2P6VES5_9CHLO2.940e-845.90ATP binding n=1 Tax=Micractinium conductrix TaxID=... [more]
E1Z7N3_CHLVA5.460e-845.90Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A7S0F1J5_9CRYP5.500e-840.68Hypothetical protein n=2 Tax=Hanusia phi TaxID=303... [more]
A0A5J4Z0Z3_PORPP7.430e-840.00Calcium/calmodulin-dependent protein kinase type 1... [more]
A0A7S2Y9Q7_9STRA2.790e-543.24Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3C622_9VIRI3.830e-542.37Hypothetical protein (Fragment) n=2 Tax=Prasinoder... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99312contigH-elongata_contig99312:1145..2108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue7.7e-27
Seed eggNOG ortholog2880.D8LSY5
EggNOG OGs28J07@1,2QRC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931382.4492235-CDS-H-elongata_contig99312:1144..12121622931382.4492235-CDS-H-elongata_contig99312:1144..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99312 1145..1212 -
1691679813.4471712-CDS-H-elongata_contig99312:1144..12121691679813.4471712-CDS-H-elongata_contig99312:1144..1212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99312 1145..1212 -
1622931382.468285-CDS-H-elongata_contig99312:1951..21081622931382.468285-CDS-H-elongata_contig99312:1951..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99312 1952..2108 -
1691679813.4570835-CDS-H-elongata_contig99312:1951..21081691679813.4570835-CDS-H-elongata_contig99312:1951..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99312 1952..2108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99312.17268.1prot_H-elongata_contig99312.17268.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99312 1145..2108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99312.17268.1

>prot_H-elongata_contig99312.17268.1 ID=prot_H-elongata_contig99312.17268.1|Name=mRNA_H-elongata_contig99312.17268.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
FFDAFNPQWKTARRSTFVREMMRGAASALAFMHEAGVVHRSLGAPSLRVN
TLDERFSRQVEVLLSDFGFACRLSE
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mRNA from alignment at H-elongata_contig99312:1145..2108-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99312.17268.1 ID=mRNA_H-elongata_contig99312.17268.1|Name=mRNA_H-elongata_contig99312.17268.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=964bp|location=Sequence derived from alignment at H-elongata_contig99312:1145..2108- (Himanthalia elongata Himel1 dioecious)
TTTTTCGATGCTTTTAACCCCCAGTGGAAGACTGCGAGGAGATCGACGTT
CGTGAGGGAGATGATGAGGGGCGCGGCGAGCGCGCTAGCCTTCATGCACG
AGGCGGGAGTCGTGCATCGATCGCTGGGAGCGCCAAGCTTGCGGGTGAAC
ACTCTCGGTGAGACTGTAGTTAAAGGAGGGGGAGGAGGAGGAGAGGAAAT
GGAGCGGCGGGAATCTGAAAAAGGCCGAAAAAACTGTTTGTTGGGCAAGA
AAGAGGCGCGCCGCGGCCGGGGACGGGGTGGGTGGGTGGAAGTCGGTCCC
CAAACATCTGTACAAGGACGGGGTGGCGGGGGTGGGGGGGAGTGCTTGAT
CTATCTGCTTCGCCGGTCGCTTCCACCATTTCCCCCCGTGAAGTCGCACT
CTTCGTCTTTCGTTGGCACGGCAGCAGGCTATAACAGGCTATCGGCCTTC
CATCGGGTCGTCGCCGTTGATAGTCGTGCGGGGGTAAAATTGTATTGGGT
GTTCGCATTCTGTTGCTTTTTTCTTCTTCTCTCAATAGCTCGATCCTTTG
TTACCCACATGCACTGTATATAATAGTGATCTCCCCACTCCAAGGAAGGA
CTTTGCTATATAATATATACACAAAATATACTACGTATATTGAAGCGGCT
ACCATACTGTACGTCCCACTTGTGCGTCTTTTGTTTTCAGAGCCCTGCTC
TAGAACCAATGCGTGATTTCGCTCGGCTTAGACACACATGCCTCAGTGGC
TGGCCTCGCTCCGCTGCTGCTTGTGGCGTCTCATTGCGCGTGGCAACGCT
CTTGGCGTACGGTAGACCGAGCACAGCACCTCTTTTTTACCTCTCCGCTT
CTCTCCGCTCCCCTCCCCTTTAAAAACGTGAAACGATTTTCAAAAGACGA
GCGTTTCTCGCGGCAGGTGGAGGTGCTTCTATCGGACTTTGGATTTGCCT
GCCGGTTGTCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig99312:1145..2108-

>mRNA_H-elongata_contig99312.17268.1 ID=mRNA_H-elongata_contig99312.17268.1|Name=mRNA_H-elongata_contig99312.17268.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig99312:1145..2108- (Himanthalia elongata Himel1 dioecious)
TTTTTCGATGCTTTTAACCCCCAGTGGAAGACTGCGAGGAGATCGACGTT
CGTGAGGGAGATGATGAGGGGCGCGGCGAGCGCGCTAGCCTTCATGCACG
AGGCGGGAGTCGTGCATCGATCGCTGGGAGCGCCAAGCTTGCGGGTGAAC
ACTCTCGTTTTTCGATGCTTTTAACCCCCAGTGGAAGACTGCGAGGAGAT
CGACGTTCGTGAGGGAGATGATGAGGGGCGCGGCGAGCGCGCTAGCCTTC
ATGCACGAGGCGGGAGTCGTGCATCGATCGCTGGGAGCGCCAAGCTTGCG
GGTGAACACTCTCGACGAGCGTTTCTCGCGGCAGGTGGAGGTGCTTCTAT
CGGACTTTGGATTTGCCTGCCGGTTGTCCGAGACGAGCGTTTCTCGCGGC
AGGTGGAGGTGCTTCTATCGGACTTTGGATTTGCCTGCCGGTTGTCCGAG
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