mRNA_H-elongata_contig99139.17254.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI) HSP 1 Score: 145 bits (366), Expect = 2.840e-36 Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLDNQLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVGILK 240
+IP+WAKGSALS+AL RQY+ ++DPD IFPEVF+CDLEAIFPVNKSRYHRRGSSANW PDRVTPQEVLTYKRSVGI K
Sbjct: 194 KIPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQEVLTYKRSVGIAK 273
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A6H5KX29_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX29_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.870e-32 Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLDNQLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVGILK 240
+IP+WAKGSALS+AL RQY+ ++DPD IFPEVF+CDLEAIFPV KSRYHRRGSSANW PDRVTPQEVLTYKRSVGI K
Sbjct: 1440 KIPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVTKSRYHRRGSSANWTPDRVTPQEVLTYKRSVGIAK 1519
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A836CEJ8_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ8_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.170e-16 Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 4 IPSWAKGSALSDALRRQYSLDNQLDPDTIFPEVF-SCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRS 225
+P WAKGS L AL QY+ DPDTIF +V SC+LE IF RY +RGSSANWA D++TP EV+TYKR+
Sbjct: 48 VPEWAKGSQLKRALEAQYARTAP-DPDTIFDDVTQSCNLETIFARKSGRYGKRGSSANWAADKLTPAEVMTYKRA 121
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: B7FZQ8_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZQ8_PHATC) HSP 1 Score: 89.7 bits (221), Expect = 2.760e-15 Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLDN-QLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVG 231
++P WA+ S L AL +QY+++ LDPD IF EV +CDLEAIF K+RY RR SS NW+ DR T E LTYKR++G
Sbjct: 516 RVPMWAEKSNLIPALEKQYTVNTGTLDPDEIFGEVQTCDLEAIFDQRKTRYQRRTSSGNWSKDRATTYEKLTYKRTMG 593
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A1E7FGC0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 5.290e-15 Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSL---DNQLDPDTIFPEVFSCDLEAIFPVNKSR-YHRRGSSANWAPDRVTPQEVLTYKRSVG 231
+IP+WA + L AL +QY+ ++DPD IFPEV SCDLEAIF K++ Y R SS NWA D+VT E L YKR +G
Sbjct: 32 KIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEKLVYKREMG 112
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A7S2S9K2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9K2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 5.980e-15 Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLD--NQLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVGILK 240
++P WA S L AL RQ+ LD +++DPD +FP+V +CDLEAIF K RY R SSANWA D V+ E L YKR++G K
Sbjct: 168 KVPEWAMRSNLLKALERQF-LDGPDRIDPDQLFPQVTTCDLEAIFDQKKKRYATRTSSANWAKDSVSAAETLVYKRTMGFDK 248
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A7S2M2L9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 8.250e-15 Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLD-NQLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVGILK 240
++P WA+ L AL RQ++ N+LDPD IF EV +C+LE IF KSRY RR SS NW D VT E LTYKR++G K
Sbjct: 229 KVPEWAQRHNLHRALERQFADGPNRLDPDKIFGEVLTCNLEEIFDKKKSRYQRRTSSGNWTKDHVTIAEKLTYKRTMGYQK 309
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A7S3Q8T4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8T4_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.080e-14 Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLDN--QLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVGILK 240
++P WA+ L AL RQ+ LDN ++DPDTIF EV +CDLEAIF K RY +R S+ NW DRVT E L YKR +G K
Sbjct: 676 KVPKWAQKDRLLPALERQF-LDNPDRVDPDTIFHEVSTCDLEAIFGQRKKRYAKRASTGNWTKDRVTASEKLVYKRKMGFQK 756
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: A0A7S1FZB2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZB2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 9.240e-14 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 1 QIPSWAKGSALSDALRRQYSLDNQ---LDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSVGIL 237
++P WA+ S L++A+ +QY+ N +DPD+IFPEV SC+L+ IF K +Y RR SS NW D++T E L YKR++G +
Sbjct: 580 RVPEWARNSNLNEAIIKQYAQCNGEDLIDPDSIFPEVHSCNLQDIFQQKKLKYSRRTSSGNWTEDKITIMENLVYKRNMGFM 661
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Match: K0SBK4_THAOC (SAP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBK4_THAOC) HSP 1 Score: 84.7 bits (208), Expect = 1.290e-13 Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 4 IPSWAKGSALSDALRRQYSLD-NQLDPDTIFPEVFSCDLEAIFPVNKSRYHRRGSSANWAPDRVTPQEVLTYKRSV 228
+P WA+ S L AL +QY+ N+LDPD IF EV SC+L+ IF K+RY RR SS NW+ D VT +E L YKR+V
Sbjct: 624 VPQWAQKSNLMRALEKQYADGPNRLDPDKIFGEVLSCNLDEIFDKKKARYQRRTSSGNWSQDHVTAKEKLAYKRAV 699 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99139.17254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig99139.17254.1 >prot_H-elongata_contig99139.17254.1 ID=prot_H-elongata_contig99139.17254.1|Name=mRNA_H-elongata_contig99139.17254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp QIPSWAKGSALSDALRRQYSLDNQLDPDTIFPEVFSCDLEAIFPVNKSRYback to top mRNA from alignment at H-elongata_contig99139:13..1851+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig99139.17254.1 ID=mRNA_H-elongata_contig99139.17254.1|Name=mRNA_H-elongata_contig99139.17254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1839bp|location=Sequence derived from alignment at H-elongata_contig99139:13..1851+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig99139:13..1851+ >mRNA_H-elongata_contig99139.17254.1 ID=mRNA_H-elongata_contig99139.17254.1|Name=mRNA_H-elongata_contig99139.17254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig99139:13..1851+ (Himanthalia elongata Himel1 dioecious)back to top |