mRNA_H-elongata_contig99014.17246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig99014.17246.1
Unique NamemRNA_H-elongata_contig99014.17246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.050e-35
Identity = 68/83 (81.93%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 MGAWAEDAVARCVCVLALDRFGDYSSRMVAPVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            M AWAEDAVARCVCVLALDRFGDYSSRMVAPVRETAAQLLAVAALQL++  LRQ A LL ELT + EWQ RHGGFC  +SLCA
Sbjct:  375 MAAWAEDAVARCVCVLALDRFGDYSSRMVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 457          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 6.290e-17
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   82 MVAPVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            MVAPVRETAAQLLAVAALQL++  LRQ A LL ELT + EWQ RHGGFC  +SLCA
Sbjct:    1 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 56          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: D8TVL8_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TVL8_VOLCA)

HSP 1 Score: 82.8 bits (203), Expect = 8.140e-17
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDYSSRMV-APVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            W ED +   +CVLALDRFGDY S  V APVRETAAQ L  A   LD G +R  A +L +L    +W+ R+GGFCG   + A
Sbjct:   52 WLEDCIVHLLCVLALDRFGDYGSDQVTAPVRETAAQALGTALTALDPGSVRAVAAMLRDLQGQNDWRVRYGGFCGLKYMLA 132          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A8J4FNQ9_9CHLO (DUF3535 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FNQ9_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 8.870e-17
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDYSSRMV-APVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            W ED +   +CVLALDRFGDY S  V APVRETAAQ L +A   LDS  +R  A +L EL    +W+ R+GGFCG   + A
Sbjct:  135 WLEDCIVHLLCVLALDRFGDYGSDQVTAPVRETAAQALGMALTALDSVSVRTVAAMLQELQGQNDWRVRYGGFCGLKYMLA 215          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A6J2JYY0_BOMMA (TATA-binding protein-associated factor 172 n=5 Tax=Bombyx TaxID=7090 RepID=A0A6J2JYY0_BOMMA)

HSP 1 Score: 82.8 bits (203), Expect = 1.220e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDY-SSRMVAPVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            W ED   R +CVLALDRFGD+ S ++VAPVRET AQ L VA  QLD   +R+ A LLS L    +W+ RHG   GF  + A
Sbjct:  330 WLEDMALRLLCVLALDRFGDFVSDQVVAPVRETCAQTLGVALAQLDEARVRKVAGLLSSLAAQAQWEARHGALLGFKYMLA 410          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A061QWC4_9CHLO (Tata-binding protein-associated factor 172 (Fragment) n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QWC4_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 1.520e-16
Identity = 45/82 (54.88%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    7 AWAEDAVARCVCVLALDRFGDY-SSRMVAPVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            AW +D V R VCVLALDRFGDY S ++V PVRETAAQ L  AA  L    L+    +L +LT  EEWQ RHG   G+  L A
Sbjct:  199 AWLQDCVVRLVCVLALDRFGDYVSDQVVMPVRETAAQALGAAATALPGTSLQAVVRMLQQLTGREEWQVRHGCMVGWKYLLA 280          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A835XVG1_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVG1_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 2.290e-16
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDYSSRMV-APVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCG 231
            W ED  A  +CVLALDRFGDY S  V APVRETAAQ L +A + LD   + + A +L+EL V  +W+ R+GGFCG
Sbjct:  375 WLEDCCAHLLCVLALDRFGDYGSDQVTAPVRETAAQALGMALVALDPLSVARVASMLAELQVQPDWRVRYGGFCG 449          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A8J4BAT6_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BAT6_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 3.050e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDYSSRMV-APVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            W ED V   +CVLALDRFGDY S  V APVRETAAQ L +A   LD+  +R  A +L EL    +W+ R+GGFCG   + A
Sbjct:  414 WLEDCVVHLLCVLALDRFGDYGSDQVTAPVRETAAQALGMALTTLDAISVRTVAAMLRELQGQNDWRVRYGGFCGLKYMLA 494          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A8J4BB21_9CHLO (Uncharacterized protein n=6 Tax=Volvox TaxID=3066 RepID=A0A8J4BB21_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDYSSRMV-APVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            W ED V   +CVLALDRFGDY S  V APVRETAAQ L +A   LD+  +R  A +L EL    +W+ R+GGFCG   + A
Sbjct:  404 WLEDCVVHLLCVLALDRFGDYGSDQVTAPVRETAAQALGMALTTLDAISVRTVAAMLRELQGQNDWRVRYGGFCGLKYMLA 484          
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Match: A0A2H1VKQ2_SPOFR (SFRICE_016570 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VKQ2_SPOFR)

HSP 1 Score: 80.5 bits (197), Expect = 7.870e-16
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   10 WAEDAVARCVCVLALDRFGDY-SSRMVAPVRETAAQLLAVAALQLDSGGLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA 249
            W ED   R +CVLALDRFGD+ S ++VAPVRET AQ L VA  QL +  +R+ A LL+ L+   +W+ RHG   GF  L A
Sbjct:   13 WLEDMALRLLCVLALDRFGDFVSDQVVAPVRETCAQTLGVALAQLGAARVRKVAALLASLSAHAQWEARHGALLGFKYLLA 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig99014.17246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBB5_ECTSI2.050e-3581.93Essential abundant protein involved in regulation ... [more]
A0A6H5J7D4_9PHAE6.290e-1775.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8TVL8_VOLCA8.140e-1751.85Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A8J4FNQ9_9CHLO8.870e-1753.09DUF3535 domain-containing protein n=1 Tax=Volvox r... [more]
A0A6J2JYY0_BOMMA1.220e-1653.09TATA-binding protein-associated factor 172 n=5 Tax... [more]
A0A061QWC4_9CHLO1.520e-1654.88Tata-binding protein-associated factor 172 (Fragme... [more]
A0A835XVG1_9CHLO2.290e-1656.00Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J4BAT6_9CHLO3.050e-1653.09Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A8J4BB21_9CHLO3.130e-1653.09Uncharacterized protein n=6 Tax=Volvox TaxID=3066 ... [more]
A0A2H1VKQ2_SPOFR7.870e-1651.85SFRICE_016570 (Fragment) n=1 Tax=Spodoptera frugip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig99014contigH-elongata_contig99014:1089..1498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.8e-30
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931379.6357062-CDS-H-elongata_contig99014:1088..12571622931379.6357062-CDS-H-elongata_contig99014:1088..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99014 1089..1257 -
1691679812.3238807-CDS-H-elongata_contig99014:1088..12571691679812.3238807-CDS-H-elongata_contig99014:1088..1257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99014 1089..1257 -
1622931379.6488461-CDS-H-elongata_contig99014:1418..14981622931379.6488461-CDS-H-elongata_contig99014:1418..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99014 1419..1498 -
1691679812.3435407-CDS-H-elongata_contig99014:1418..14981691679812.3435407-CDS-H-elongata_contig99014:1418..1498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig99014 1419..1498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig99014.17246.1prot_H-elongata_contig99014.17246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig99014 1089..1498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig99014.17246.1

>prot_H-elongata_contig99014.17246.1 ID=prot_H-elongata_contig99014.17246.1|Name=mRNA_H-elongata_contig99014.17246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MGAWAEDAVARCVCVLALDRFGDYSSRMVAPVRETAAQLLAVAALQLDSG
GLRQTAELLSELTVAEEWQPRHGGFCGFDSLCA
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mRNA from alignment at H-elongata_contig99014:1089..1498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig99014.17246.1 ID=mRNA_H-elongata_contig99014.17246.1|Name=mRNA_H-elongata_contig99014.17246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=410bp|location=Sequence derived from alignment at H-elongata_contig99014:1089..1498- (Himanthalia elongata Himel1 dioecious)
ATGGGAGCTTGGGCGGAGGACGCTGTCGCGCGGTGCGTCTGTGTCCTGGC GCTAGATCGATTCGGCGACTACAGCAGCCGGTAAGGAAATATTTGTGATT GAGAAGCTTGTGTCCGGCACCTTTTGACCCGTTCAAGACTGAGTGTGATG GAGCTTACGTATACGTTGTGAAGTTGCCCTCGCCTCGGTAGAAATGGCAA ACGAGCCTGCGTGTTACCCTTTCCGCTCCTCCGCTCGACAGTATGGTGGC TCCCGTGCGAGAGACGGCTGCTCAGCTGCTCGCGGTGGCAGCGCTTCAGC TCGACAGCGGCGGGCTCAGGCAGACCGCCGAGCTCTTGTCGGAACTGACT GTTGCGGAAGAGTGGCAGCCGCGTCACGGTGGCTTTTGCGGCTTTGATTC CCTCTGCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig99014:1089..1498-

>mRNA_H-elongata_contig99014.17246.1 ID=mRNA_H-elongata_contig99014.17246.1|Name=mRNA_H-elongata_contig99014.17246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig99014:1089..1498- (Himanthalia elongata Himel1 dioecious)
ATGGGAGCTTGGGCGGAGGACGCTGTCGCGCGGTGCGTCTGTGTCCTGGC
GCTAGATCGATTCGGCGACTACAGCAGCCGATGGGAGCTTGGGCGGAGGA
CGCTGTCGCGCGGTGCGTCTGTGTCCTGGCGCTAGATCGATTCGGCGACT
ACAGCAGCCGTATGGTGGCTCCCGTGCGAGAGACGGCTGCTCAGCTGCTC
GCGGTGGCAGCGCTTCAGCTCGACAGCGGCGGGCTCAGGCAGACCGCCGA
GCTCTTGTCGGAACTGACTGTTGCGGAAGAGTGGCAGCCGCGTCACGGTG
GCTTTTGCGGCTTTGATTCCCTCTGCGCCTATGGTGGCTCCCGTGCGAGA
GACGGCTGCTCAGCTGCTCGCGGTGGCAGCGCTTCAGCTCGACAGCGGCG
GGCTCAGGCAGACCGCCGAGCTCTTGTCGGAACTGACTGTTGCGGAAGAG
TGGCAGCCGCGTCACGGTGGCTTTTGCGGCTTTGATTCCCTCTGCGCC
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