mRNA_H-elongata_contig98966.17243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98966.17243.1
Unique NamemRNA_H-elongata_contig98966.17243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98966.17243.1 vs. uniprot
Match: D8LET4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LET4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.680e-14
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    4 QVLSQLSMLSDVPHDTTATSGFAVQAIALVIGLGLFPIYLDVMYYTTPETIEEGTF-SCTAPWIKQE-DLESAERKVET 234
            QVLSQ++M S   +     +GFA QA+A V+GLGLFP+YLD MYYTTPETI++  F    + W K + D+E  ERKVE+
Sbjct:  294 QVLSQVTMSSTSTNIVDRYAGFAAQAVAYVVGLGLFPMYLDAMYYTTPETIDQNDFCGDVSAWSKGKGDIE--ERKVES 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98966.17243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LET4_ECTSI7.680e-1453.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98966contigH-elongata_contig98966:174..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue8.8e-09
Seed eggNOG ortholog2880.D8LET4
EggNOG OGs2E0GM@1,2S7X1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEight transmembrane domain protein
Ec32 orthologEc-21_005510.1
Exons2
Model size234
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98966.17243.1prot_H-elongata_contig98966.17243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98966 198..1061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931379.4219055-UTR-H-elongata_contig98966:173..1971622931379.4219055-UTR-H-elongata_contig98966:173..197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98966 174..197 +
1691679812.1987693-UTR-H-elongata_contig98966:173..1971691679812.1987693-UTR-H-elongata_contig98966:173..197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98966 174..197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931379.435556-CDS-H-elongata_contig98966:197..3001622931379.435556-CDS-H-elongata_contig98966:197..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98966 198..300 +
1691679812.2114563-CDS-H-elongata_contig98966:197..3001691679812.2114563-CDS-H-elongata_contig98966:197..300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98966 198..300 +
1622931379.449203-CDS-H-elongata_contig98966:954..10611622931379.449203-CDS-H-elongata_contig98966:954..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98966 955..1061 +
1691679812.230945-CDS-H-elongata_contig98966:954..10611691679812.230945-CDS-H-elongata_contig98966:954..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98966 955..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98966.17243.1

>prot_H-elongata_contig98966.17243.1 ID=prot_H-elongata_contig98966.17243.1|Name=mRNA_H-elongata_contig98966.17243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MLSDVPHDTTATSGFAVQAIALVIGLGLFPIYLDVMYYTTPETIEEGTFS
CTAPWIKQEDLESAERKVET
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mRNA from alignment at H-elongata_contig98966:174..1061+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98966.17243.1 ID=mRNA_H-elongata_contig98966.17243.1|Name=mRNA_H-elongata_contig98966.17243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at H-elongata_contig98966:174..1061+ (Himanthalia elongata Himel1 dioecious)
TTCCAGGTGTTGAGCCAGCTGTCCATGCTTTCTGACGTTCCACACGATAC
CACGGCAACGAGTGGCTTCGCTGTCCAGGCGATCGCGCTTGTGATCGGCC
TCGGTCTCTTCCCCATTTATCTAGACGGTGGGTGTCGGCTTCGCCGGTGG
TCTCGATGGTCCCTCCAGTTCTTTCTGTGTGCTCTATTGTACGTTGACTG
TTCTCCTATTTTTGACTGTGTCATTGTGAATGTGCGCCGGGTGGCTCAAA
TGCTAAAATAGCCCAACCGGTTATTTATAGATACTCCTCGCTCTTCGACA
CATTTTATAGACTGTGCACAACAAAAAGNNNNNNNNNNCCGGGTGGCTCA
AATGCTAAAATAGCCCAACCGGTTATTTATGCCCTCCCCCCACCCTTCAT
CACAAGGTTGTTAGGAGGAAAATTGTGGAGAGAGAACCGGGCTGACGTGT
GGTGTAAACTTTCAGCTGTCGCTTTTTTTCATTTGTATGTTTCGATGCCT
TTTGATTGATTGCGCTAGAAAACGGATAGTAGATAGCAATTTCCGCGCCG
CCTTTAACCGTGCGAGCTGTGATTGATGATGATGACGATAGACCTAGCTT
TTTATTTTATGTTGTCGTGCCCAACGCCTTCCTTCGCGCATACTGTACTT
CAGCTATAGCTCTGCACCTGCTTCCTTAATGTATGTCGTGACTTCAAAAT
AGAATCTCTTCTCACCCCAAAAGCGTCCTGATAGCTCGTGCCCCTCCTCC
CTCCCCTTCCGCTTCCTTGCTCTTCTTGTAGTCATGTACTACACAACCCC
TGAGACCATCGAGGAGGGCACATTCAGCTGCACCGCTCCTTGGATCAAGC
AAGAAGATCTTGAGAGCGCAGAACGGAAGGTCGAAACC
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Coding sequence (CDS) from alignment at H-elongata_contig98966:174..1061+

>mRNA_H-elongata_contig98966.17243.1 ID=mRNA_H-elongata_contig98966.17243.1|Name=mRNA_H-elongata_contig98966.17243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig98966:174..1061+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTCTGACGTTCCACACGATACCACGGCAACGAGTGGCTTCGCTGT
CCAGGCGATCGCGCTTGTGATCGGCCTCGGTCTCTTCCCCATTTATCTAG
ACGATGCTTTCTGACGTTCCACACGATACCACGGCAACGAGTGGCTTCGC
TGTCCAGGCGATCGCGCTTGTGATCGGCCTCGGTCTCTTCCCCATTTATC
TAGACGTCATGTACTACACAACCCCTGAGACCATCGAGGAGGGCACATTC
AGCTGCACCGCTCCTTGGATCAAGCAAGAAGATCTTGAGAGCGCAGAACG
GAAGGTCGAAACCTCATGTACTACACAACCCCTGAGACCATCGAGGAGGG
CACATTCAGCTGCACCGCTCCTTGGATCAAGCAAGAAGATCTTGAGAGCG
CAGAACGGAAGGTCGAAACC
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