mRNA_H-elongata_contig9887.17230.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 273 bits (698), Expect = 4.360e-82 Identity = 152/283 (53.71%), Postives = 182/283 (64.31%), Query Frame = 1
Query: 10 MVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLE-ESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
MVHAIR +ARVP+KK C+T M V K M+E++ L+EGE VCIT+DGWTSCANDT+MSLT +L+TSAW+L++LSVD KSEGTTTGDA A GIKA V +HGL GKVT +TTDCEPSMVKMGRLL ++ + T IGCCN+RL+ST+SIVFN R+K+V+ L RGLVT Y TSSQ AD+L QFVK Y V+NK+VIQDVV TGSLVVPFI DLR +LEDAI+
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVV----------------------------------------------------------------TGSLVVPFIYDLRNSLEDAID 219
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.200e-72 Identity = 124/285 (43.51%), Postives = 184/285 (64.56%), Query Frame = 1
Query: 1 FRGMVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
F MV +++ A VP K+ + + + K + + ++ L GE V +T+DGWTS +NDT+M T + ++S ++L++L V+ KK G TTG+ + +KA + R+GL + TTDCEPSMVK GRLLEE+ TH+GC HRL+S TS F + + +AL R +VT Y+ SSQ +D+L Q ++ +VE KKV+QDV RW ST + RLL LR PI++HE D + PLLK DW V++ + P+ + F+ +Q E K VT SLV+P+I DLR+ L++A+E
Sbjct: 7 FIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVE 290
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 228 bits (580), Expect = 5.220e-67 Identity = 127/285 (44.56%), Postives = 172/285 (60.35%), Query Frame = 1
Query: 1 FRGMVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGI-CTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAI 852
F +V + AR P ++A + M ++ K + + +L+ E V IT DGWTS +N+++MSLTV+ + W+L LS++ K G+T G+ A I + + RHGL G+VT TDCEPSMVK GRLLE G HIGC NHR++STTS VFN + L +A R +V Y SSQ + +LA F+ ++ V+QDV RW S+ M+ RLL L + I HE D + P+L DW V+ I P+L FMQ Q LEG KYVTGS+ VP I +LR LE AI
Sbjct: 34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIG-ILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAI 316
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 221 bits (562), Expect = 3.510e-64 Identity = 128/282 (45.39%), Postives = 169/282 (59.93%), Query Frame = 1
Query: 10 MVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESG-ICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAI 852
MV A+ A+VP ++ ++ M V + + +L+ E V IT DGWTS N+++MSLTV+ + W+L LS+D K GTTTG+ A + V RH L G+V TDCEPSM+K GRLLE G +HIGC NHR++STTS VFN + L + L R LV Y SSQ A +L Q ++E V+QDV RW ST MV RLL L + I HE D++ PLL DW V+ I P+L FM+ Q LEG +YVTGS+ + + +LRE LE AI
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCG-ILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAI 280
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 215 bits (547), Expect = 7.790e-60 Identity = 113/247 (45.75%), Postives = 160/247 (64.78%), Query Frame = 1
Query: 115 LEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
+ GE V +T+DGWT +NDT+MS T + ++S ++L++L ++ KK T G+ + +KA + R+GL G+ ITTDCE SMVK GRLLEE+ TH+GC HRL+S TS F + + +AL RG+VT Y+ SSQ +D+L Q V +VE K V+QDV RW ST + RL+ LR PI++HE D PLLK DW V++ + +L+ FM Q LE K VT LV P+I DL++ L++A+E
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVE 246
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 174 bits (442), Expect = 3.490e-48 Identity = 98/233 (42.06%), Postives = 139/233 (59.66%), Query Frame = 1
Query: 157 SCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
S +NDT+M+ T + ++S ++L++L ++ KK G TTG+ + +KA + R+GL G+ TTDCEP MVK GRLLEE+ +H+GC HR +S TS F + + +AL RG+VT Y+ SSQ +++L Q +VE KKV+QDV RW ST E D + PLL DW V++ + P+L FM Q LE K VT SLV +I DLR+ L++AIE
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCD-IVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIE 218
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: UPI001AD6D62A (E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001AD6D62A) HSP 1 Score: 96.3 bits (238), Expect = 1.580e-18 Identity = 73/272 (26.84%), Postives = 128/272 (47.06%), Query Frame = 1
Query: 43 PDKKACITNMNDVTKTMIERLVSLLEGED-VCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKH-EEADKLE---PLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLE 843
P ++A ++ + + ERL L + +TAD WTS AND ++ +T + W L S ++ + T + A + T G+ KV + TD ++ L E + C H L+ +V ++R++A R V + SS L++ KK+ QD+ RW+ST M+ LLEL+EP+ + E++ ++ P L DW ++E + VL+ + LL G KYVT S+++P ++ L+ ++
Sbjct: 148 PSRRAVSAKVDALYTSRRERLQDELSAASFISLTADFWTSIANDAYLGITAHWIDDDWVLRSATLQVRNVPERHTAEQCASEVLETATDWGIVEKVKAVCTDNARNIC----LGVERANFQSLKCAAHTLQLCVHKALSVTGVERLLAACRRTVGHFKHSSNNQAVLSKHAAE-LGAPKKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLIPALKLLKNKMK 414
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6P5VG43_DROOB (zinc finger BED domain-containing protein 1-like n=1 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VG43_DROOB) HSP 1 Score: 92.4 bits (228), Expect = 2.570e-17 Identity = 87/297 (29.29%), Postives = 140/297 (47.14%), Query Frame = 1
Query: 1 FRGMVHAIRANARVPDK----KACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELIS--LSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKK-VIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPL-LKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPF---IQDLRENLEDAIET 858
FR ++ + ++P K I N + KT ++ + +E +V ITADGWTS AN+ ++++T + S ++L S LS + ++ T A+ I+ + GL KV I TD + SM K E GI TH C H L V + L V++ + +VT S +A+F K VEN +IQ+V RW+S MV LL+ + +S + PL + +++ + +L F + + G KYVT SL++P IQ NL+ ++T
Sbjct: 17 FRELLAEMDPRYKLPSKTHLRNVAIPNAYEDLKTKLKFALDCVE--NVAITADGWTSMANEGYLTITCHFINSEFQLNSAVLSTTTLINQTNHTAANIAESIRVVLVEWGLVEKVVCIVTDNDASMKKA---CERLGI-THFPCFAHTLNLLIQDVLKIDILDPVLSKCKAIVTFMKRSPIG---MAKF-KQAQDVENPMGLIQEVATRWNSAFAMVKGLLDTNDTLSTVLLSLPKAPLPFSVEEIDIMKELAKLLSPFQEATVAISGSKYVTISLLIPLTCEIQQKLNNLKSKLKT 303
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: UPI001891C6FA (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=UPI001891C6FA) HSP 1 Score: 90.1 bits (222), Expect = 1.740e-16 Identity = 69/279 (24.73%), Postives = 124/279 (44.44%), Query Frame = 1
Query: 100 RLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEG-KVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPI------SKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDA-IETSIIWMSVMTRMSLRQERW 912
R V+ + +TAD WTS AN+ ++ +T +T W++ S+ + + + T A+ ++ V R + K+ I D ++V +L E + + C H L+ + +++ I R LV + S +L + E+ ++QDV RW+ST M+ RLLE R P+ S K LK W+++ + L+ F + G+KY T S + P ++ L ++ + A E++ + +T QERW
Sbjct: 52 RTVTNTNHSKLALTADIWTSVANEAYLGITCHYITDDWDMQSICLTTMPLQDRHTASNIAEWLEEVVARFEIPASKIIAIVHDNGANVVAAANILVEKHGWSSVRCTGHTLQLVINAALKHPSIEKAIGATRCLVQHFKKSELACTKLKDKQQQMATPEHS-LVQDVSTRWNSTFYMISRLLEQRWPVTATLSDSSITSRGKRYLDLKPEQWSLLGELSTALKPFECATVFMSGQKYTTISAIPPLVKGLLKSTQSAAFESAPLRAFQLTATQHLQERW 329
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A1A8ACL7_NOTFU (DUF659 domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8ACL7_NOTFU) HSP 1 Score: 85.1 bits (209), Expect = 4.340e-15 Identity = 77/290 (26.55%), Postives = 129/290 (44.48%), Query Frame = 1
Query: 67 NMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEG-KVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISK-----HEEADKLEPL-LKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDA-IETSIIWMSVMTRMSLRQERW 912
NMN V T+ S L+ + + ITAD WTS AN+ ++ +T + + W++ S+ + + E T A ++ + + + KV+ I D ++V +LLE I C H L+ + + + + R LV S + +L + + +IQDV RW+ST M+ RLLE R P++ H + L LK W+++ + LE F + G KY T S V P I+ L +++E+ ET + T ++RW
Sbjct: 37 NMNQVKDTL-----SALDSQ-IAITADIWTSVANEAYLGITCHYIGTEWQMESICLSTMPLEDRHTAQNIAMWLQETLEKFEINPEKVSAIVHDNGANIVAAAKLLEAQFGWASIRCTGHTLQLVLIPALSHPVIAKAVGAARCLVEHLKKSELASTKLKE-KQQQMGTPAHTLIQDVSTRWNSTYHMISRLLEQRWPVTATLSDPHVTKSSKQYLDLKPEQWSLLGELSTALEPFDAATEYMSGEKYTTISSVPPLIKGLVKSVENMDFETVGAQVFQKTAKEQLEQRW 319 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9887.17230.1 >prot_H-elongata_contig9887.17230.1 ID=prot_H-elongata_contig9887.17230.1|Name=mRNA_H-elongata_contig9887.17230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp MVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSback to top mRNA from alignment at H-elongata_contig9887:4156..5070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9887.17230.1 ID=mRNA_H-elongata_contig9887.17230.1|Name=mRNA_H-elongata_contig9887.17230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig9887:4156..5070+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9887:4156..5070+ >mRNA_H-elongata_contig9887.17230.1 ID=mRNA_H-elongata_contig9887.17230.1|Name=mRNA_H-elongata_contig9887.17230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig9887:4156..5070+ (Himanthalia elongata Himel1 dioecious)back to top |