mRNA_H-elongata_contig9887.17230.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9887.17230.1
Unique NamemRNA_H-elongata_contig9887.17230.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 4.360e-82
Identity = 152/283 (53.71%), Postives = 182/283 (64.31%), Query Frame = 1
Query:   10 MVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLE-ESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
            MVHAIR +ARVP+KK C+T M  V K M+E++  L+EGE VCIT+DGWTSCANDT+MSLT +L+TSAW+L++LSVD  KSEGTTTGDA A GIKA V +HGL GKVT +TTDCEPSMVKMGRLL  ++ + T IGCCN+RL+ST+SIVFN  R+K+V+ L RGLVT Y TSSQ AD+L QFVK Y  V+NK+VIQDVV                                                                TGSLVVPFI DLR +LEDAI+
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVV----------------------------------------------------------------TGSLVVPFIYDLRNSLEDAID 219          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.200e-72
Identity = 124/285 (43.51%), Postives = 184/285 (64.56%), Query Frame = 1
Query:    1 FRGMVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
            F  MV  +++ A VP K+  +  +  + K + + ++  L GE V +T+DGWTS +NDT+M  T + ++S ++L++L V+ KK  G TTG+   + +KA + R+GL  +    TTDCEPSMVK GRLLEE+   TH+GC  HRL+S TS  F    + + +AL R +VT Y+ SSQ +D+L Q ++   +VE KKV+QDV  RW ST   + RLL LR PI++HE  D + PLLK  DW V++ + P+ + F+ +Q   E  K VT SLV+P+I DLR+ L++A+E
Sbjct:    7 FIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVE 290          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 5.220e-67
Identity = 127/285 (44.56%), Postives = 172/285 (60.35%), Query Frame = 1
Query:    1 FRGMVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGI-CTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAI 852
            F  +V  +   AR P ++A +  M ++ K +   +  +L+ E V IT DGWTS +N+++MSLTV+ +   W+L  LS++  K  G+T G+  A  I + + RHGL G+VT   TDCEPSMVK GRLLE  G    HIGC NHR++STTS VFN + L   +A  R +V  Y  SSQ + +LA F+    ++    V+QDV  RW S+  M+ RLL L + I  HE  D + P+L   DW V+  I P+L  FMQ Q  LEG KYVTGS+ VP I +LR  LE AI
Sbjct:   34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIG-ILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAI 316          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.510e-64
Identity = 128/282 (45.39%), Postives = 169/282 (59.93%), Query Frame = 1
Query:   10 MVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESG-ICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAI 852
            MV A+   A+VP ++  ++ M  V   +   +  +L+ E V IT DGWTS  N+++MSLTV+ +   W+L  LS+D  K  GTTTG+  A  +   V RH L G+V    TDCEPSM+K GRLLE  G   +HIGC NHR++STTS VFN + L   + L R LV  Y  SSQ A +L Q      ++E   V+QDV  RW ST  MV RLL L + I  HE  D++ PLL   DW V+  I P+L  FM+ Q  LEG +YVTGS+ +  + +LRE LE AI
Sbjct:    1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCG-ILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAI 280          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 7.790e-60
Identity = 113/247 (45.75%), Postives = 160/247 (64.78%), Query Frame = 1
Query:  115 LEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
            + GE V +T+DGWT  +NDT+MS T + ++S ++L++L ++ KK    T G+   + +KA + R+GL G+   ITTDCE SMVK GRLLEE+   TH+GC  HRL+S TS  F    + + +AL RG+VT Y+ SSQ +D+L Q V    +VE K V+QDV  RW ST   + RL+ LR PI++HE  D   PLLK  DW V++ +  +L+ FM  Q  LE  K VT  LV P+I DL++ L++A+E
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQ-VCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVE 246          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.490e-48
Identity = 98/233 (42.06%), Postives = 139/233 (59.66%), Query Frame = 1
Query:  157 SCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDAIE 855
            S +NDT+M+ T + ++S ++L++L ++ KK  G TTG+   + +KA + R+GL G+    TTDCEP MVK GRLLEE+   +H+GC  HR +S TS  F    + + +AL RG+VT Y+ SSQ +++L Q      +VE KKV+QDV  RW ST                  E D + PLL   DW V++ + P+L  FM  Q  LE  K VT SLV  +I DLR+ L++AIE
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCD-IVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIE 218          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: UPI001AD6D62A (E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001AD6D62A)

HSP 1 Score: 96.3 bits (238), Expect = 1.580e-18
Identity = 73/272 (26.84%), Postives = 128/272 (47.06%), Query Frame = 1
Query:   43 PDKKACITNMNDVTKTMIERLVSLLEGED-VCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISKH-EEADKLE---PLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLE 843
            P ++A    ++ +  +  ERL   L     + +TAD WTS AND ++ +T   +   W L S ++  +      T +  A  +    T  G+  KV  + TD   ++     L  E      + C  H L+       +V  ++R++A  R  V  +  SS     L++          KK+ QD+  RW+ST  M+  LLEL+EP+ +  E++  ++   P L   DW ++E +  VL+  +    LL G KYVT S+++P ++ L+  ++
Sbjct:  148 PSRRAVSAKVDALYTSRRERLQDELSAASFISLTADFWTSIANDAYLGITAHWIDDDWVLRSATLQVRNVPERHTAEQCASEVLETATDWGIVEKVKAVCTDNARNIC----LGVERANFQSLKCAAHTLQLCVHKALSVTGVERLLAACRRTVGHFKHSSNNQAVLSKHAAE-LGAPKKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLIPALKLLKNKMK 414          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A6P5VG43_DROOB (zinc finger BED domain-containing protein 1-like n=1 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VG43_DROOB)

HSP 1 Score: 92.4 bits (228), Expect = 2.570e-17
Identity = 87/297 (29.29%), Postives = 140/297 (47.14%), Query Frame = 1
Query:    1 FRGMVHAIRANARVPDK----KACITNMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELIS--LSVDSKKSEGTTTGDAFADGIKAAVTRHGLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKK-VIQDVVMRWSSTCTMVGRLLELREPISKHEEADKLEPL-LKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPF---IQDLRENLEDAIET 858
            FR ++  +    ++P K       I N  +  KT ++  +  +E  +V ITADGWTS AN+ ++++T   + S ++L S  LS  +  ++   T    A+ I+  +   GL  KV  I TD + SM K     E  GI TH  C  H L      V  +  L  V++  + +VT    S      +A+F K    VEN   +IQ+V  RW+S   MV  LL+  + +S    +    PL     +  +++ +  +L  F +    + G KYVT SL++P    IQ    NL+  ++T
Sbjct:   17 FRELLAEMDPRYKLPSKTHLRNVAIPNAYEDLKTKLKFALDCVE--NVAITADGWTSMANEGYLTITCHFINSEFQLNSAVLSTTTLINQTNHTAANIAESIRVVLVEWGLVEKVVCIVTDNDASMKKA---CERLGI-THFPCFAHTLNLLIQDVLKIDILDPVLSKCKAIVTFMKRSPIG---MAKF-KQAQDVENPMGLIQEVATRWNSAFAMVKGLLDTNDTLSTVLLSLPKAPLPFSVEEIDIMKELAKLLSPFQEATVAISGSKYVTISLLIPLTCEIQQKLNNLKSKLKT 303          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: UPI001891C6FA (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=UPI001891C6FA)

HSP 1 Score: 90.1 bits (222), Expect = 1.740e-16
Identity = 69/279 (24.73%), Postives = 124/279 (44.44%), Query Frame = 1
Query:  100 RLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEG-KVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPI------SKHEEADKLEPLLKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDA-IETSIIWMSVMTRMSLRQERW 912
            R V+      + +TAD WTS AN+ ++ +T   +T  W++ S+ + +   +   T    A+ ++  V R  +   K+  I  D   ++V    +L E    + + C  H L+   +       +++ I   R LV  +  S     +L    +     E+  ++QDV  RW+ST  M+ RLLE R P+      S      K    LK   W+++  +   L+ F      + G+KY T S + P ++ L ++ + A  E++ +    +T     QERW
Sbjct:   52 RTVTNTNHSKLALTADIWTSVANEAYLGITCHYITDDWDMQSICLTTMPLQDRHTASNIAEWLEEVVARFEIPASKIIAIVHDNGANVVAAANILVEKHGWSSVRCTGHTLQLVINAALKHPSIEKAIGATRCLVQHFKKSELACTKLKDKQQQMATPEHS-LVQDVSTRWNSTFYMISRLLEQRWPVTATLSDSSITSRGKRYLDLKPEQWSLLGELSTALKPFECATVFMSGQKYTTISAIPPLVKGLLKSTQSAAFESAPLRAFQLTATQHLQERW 329          
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Match: A0A1A8ACL7_NOTFU (DUF659 domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8ACL7_NOTFU)

HSP 1 Score: 85.1 bits (209), Expect = 4.340e-15
Identity = 77/290 (26.55%), Postives = 129/290 (44.48%), Query Frame = 1
Query:   67 NMNDVTKTMIERLVSLLEGEDVCITADGWTSCANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRHGLEG-KVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNVQRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRWSSTCTMVGRLLELREPISK-----HEEADKLEPL-LKAADWAVIETIHPVLERFMQTQALLEGRKYVTGSLVVPFIQDLRENLEDA-IETSIIWMSVMTRMSLRQERW 912
            NMN V  T+     S L+ + + ITAD WTS AN+ ++ +T   + + W++ S+ + +   E   T    A  ++  + +  +   KV+ I  D   ++V   +LLE       I C  H L+       +   + + +   R LV     S   + +L +  +         +IQDV  RW+ST  M+ RLLE R P++      H      + L LK   W+++  +   LE F      + G KY T S V P I+ L +++E+   ET    +   T     ++RW
Sbjct:   37 NMNQVKDTL-----SALDSQ-IAITADIWTSVANEAYLGITCHYIGTEWQMESICLSTMPLEDRHTAQNIAMWLQETLEKFEINPEKVSAIVHDNGANIVAAAKLLEAQFGWASIRCTGHTLQLVLIPALSHPVIAKAVGAARCLVEHLKKSELASTKLKE-KQQQMGTPAHTLIQDVSTRWNSTYHMISRLLEQRWPVTATLSDPHVTKSSKQYLDLKPEQWSLLGELSTALEPFDAATEYMSGEKYTTISSVPPLIKGLVKSVENMDFETVGAQVFQKTAKEQLEQRW 319          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9887.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE4.360e-8253.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE1.200e-7243.51Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE5.220e-6744.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI3.510e-6445.39Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE7.790e-6045.75Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE3.490e-4842.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001AD6D62A1.580e-1826.84E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapul... [more]
A0A6P5VG43_DROOB2.570e-1729.29zinc finger BED domain-containing protein 1-like n... [more]
UPI001891C6FA1.740e-1624.73E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pygocent... [more]
A0A1A8ACL7_NOTFU4.340e-1526.55DUF659 domain-containing protein n=1 Tax=Nothobran... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9887contigH-elongata_contig9887:4156..5070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue4.9e-56
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size906
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931378.3633604-UTR-H-elongata_contig9887:4155..41641622931378.3633604-UTR-H-elongata_contig9887:4155..4164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9887 4156..4164 +
1691679811.7641354-UTR-H-elongata_contig9887:4155..41641691679811.7641354-UTR-H-elongata_contig9887:4155..4164Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9887 4156..4164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931378.3824155-CDS-H-elongata_contig9887:4164..50701622931378.3824155-CDS-H-elongata_contig9887:4164..5070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9887 4165..5070 +
1691679811.7775872-CDS-H-elongata_contig9887:4164..50701691679811.7775872-CDS-H-elongata_contig9887:4164..5070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9887 4165..5070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9887.17230.1prot_H-elongata_contig9887.17230.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9887 4165..5070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9887.17230.1

>prot_H-elongata_contig9887.17230.1 ID=prot_H-elongata_contig9887.17230.1|Name=mRNA_H-elongata_contig9887.17230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
MVHAIRANARVPDKKACITNMNDVTKTMIERLVSLLEGEDVCITADGWTS
CANDTHMSLTVSLVTSAWELISLSVDSKKSEGTTTGDAFADGIKAAVTRH
GLEGKVTVITTDCEPSMVKMGRLLEESGICTHIGCCNHRLKSTTSIVFNV
QRLKRVIALFRGLVTLYSTSSQRADQLAQFVKPYFRVENKKVIQDVVMRW
SSTCTMVGRLLELREPISKHEEADKLEPLLKAADWAVIETIHPVLERFMQ
TQALLEGRKYVTGSLVVPFIQDLRENLEDAIETSIIWMSVMTRMSLRQER
W*
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mRNA from alignment at H-elongata_contig9887:4156..5070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9887.17230.1 ID=mRNA_H-elongata_contig9887.17230.1|Name=mRNA_H-elongata_contig9887.17230.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at H-elongata_contig9887:4156..5070+ (Himanthalia elongata Himel1 dioecious)
TTTCGTGGAATGGTGCATGCGATCCGCGCGAATGCCCGCGTTCCAGACAA GAAAGCCTGCATTACCAACATGAACGATGTGACGAAGACCATGATCGAGA GGCTCGTAAGCTTGCTAGAGGGTGAAGATGTGTGTATCACTGCCGATGGC TGGACTTCTTGCGCCAATGACACGCACATGTCGTTGACAGTTAGCCTTGT CACCAGCGCGTGGGAGCTCATCTCTCTCTCGGTGGACTCCAAGAAGTCGG AGGGAACGACGACTGGTGATGCGTTTGCTGACGGTATCAAAGCCGCCGTA ACCAGACATGGCCTCGAGGGCAAGGTTACGGTGATTACCACAGACTGCGA ACCTTCCATGGTGAAGATGGGGCGCCTTCTCGAAGAAAGCGGTATCTGCA CTCACATTGGTTGCTGCAATCACCGGCTCAAAAGCACCACTTCTATCGTA TTCAACGTGCAGAGGCTCAAGAGGGTGATAGCTCTGTTCCGTGGTTTGGT CACGCTATACTCGACATCAAGCCAGAGGGCCGACCAACTTGCGCAATTCG TCAAGCCCTACTTTCGTGTAGAGAACAAGAAGGTGATCCAAGACGTGGTA ATGAGGTGGTCGTCTACTTGCACAATGGTGGGGCGGCTGCTAGAGTTGAG GGAACCAATCAGCAAGCACGAGGAAGCAGACAAGCTGGAGCCGCTGTTGA AGGCGGCAGACTGGGCGGTGATTGAGACTATTCATCCGGTCCTGGAACGG TTCATGCAAACGCAGGCTCTGCTAGAGGGCCGCAAGTACGTGACGGGTAG TTTGGTTGTGCCATTCATCCAAGACCTCCGCGAGAACCTCGAGGACGCGA TCGAGACCTCGATAATCTGGATGTCAGTAATGACGCGGATGTCACTACGG CAAGAGCGGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig9887:4156..5070+

>mRNA_H-elongata_contig9887.17230.1 ID=mRNA_H-elongata_contig9887.17230.1|Name=mRNA_H-elongata_contig9887.17230.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig9887:4156..5070+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCATGCGATCCGCGCGAATGCCCGCGTTCCAGACAAGAAAGCCTG
CATTACCAACATGAACGATGTGACGAAGACCATGATCGAGAGGCTCGTAA
GCTTGCTAGAGGGTGAAGATGTGTGTATCACTGCCGATGGCTGGACTTCT
TGCGCCAATGACACGCACATGTCGTTGACAGTTAGCCTTGTCACCAGCGC
GTGGGAGCTCATCTCTCTCTCGGTGGACTCCAAGAAGTCGGAGGGAACGA
CGACTGGTGATGCGTTTGCTGACGGTATCAAAGCCGCCGTAACCAGACAT
GGCCTCGAGGGCAAGGTTACGGTGATTACCACAGACTGCGAACCTTCCAT
GGTGAAGATGGGGCGCCTTCTCGAAGAAAGCGGTATCTGCACTCACATTG
GTTGCTGCAATCACCGGCTCAAAAGCACCACTTCTATCGTATTCAACGTG
CAGAGGCTCAAGAGGGTGATAGCTCTGTTCCGTGGTTTGGTCACGCTATA
CTCGACATCAAGCCAGAGGGCCGACCAACTTGCGCAATTCGTCAAGCCCT
ACTTTCGTGTAGAGAACAAGAAGGTGATCCAAGACGTGGTAATGAGGTGG
TCGTCTACTTGCACAATGGTGGGGCGGCTGCTAGAGTTGAGGGAACCAAT
CAGCAAGCACGAGGAAGCAGACAAGCTGGAGCCGCTGTTGAAGGCGGCAG
ACTGGGCGGTGATTGAGACTATTCATCCGGTCCTGGAACGGTTCATGCAA
ACGCAGGCTCTGCTAGAGGGCCGCAAGTACGTGACGGGTAGTTTGGTTGT
GCCATTCATCCAAGACCTCCGCGAGAACCTCGAGGACGCGATCGAGACCT
CGATAATCTGGATGTCAGTAATGACGCGGATGTCACTACGGCAAGAGCGG
TGGTGAATGGTGCATGCGATCCGCGCGAATGCCCGCGTTCCAGACAAGAA
AGCCTGCATTACCAACATGAACGATGTGACGAAGACCATGATCGAGAGGC
TCGTAAGCTTGCTAGAGGGTGAAGATGTGTGTATCACTGCCGATGGCTGG
ACTTCTTGCGCCAATGACACGCACATGTCGTTGACAGTTAGCCTTGTCAC
CAGCGCGTGGGAGCTCATCTCTCTCTCGGTGGACTCCAAGAAGTCGGAGG
GAACGACGACTGGTGATGCGTTTGCTGACGGTATCAAAGCCGCCGTAACC
AGACATGGCCTCGAGGGCAAGGTTACGGTGATTACCACAGACTGCGAACC
TTCCATGGTGAAGATGGGGCGCCTTCTCGAAGAAAGCGGTATCTGCACTC
ACATTGGTTGCTGCAATCACCGGCTCAAAAGCACCACTTCTATCGTATTC
AACGTGCAGAGGCTCAAGAGGGTGATAGCTCTGTTCCGTGGTTTGGTCAC
GCTATACTCGACATCAAGCCAGAGGGCCGACCAACTTGCGCAATTCGTCA
AGCCCTACTTTCGTGTAGAGAACAAGAAGGTGATCCAAGACGTGGTAATG
AGGTGGTCGTCTACTTGCACAATGGTGGGGCGGCTGCTAGAGTTGAGGGA
ACCAATCAGCAAGCACGAGGAAGCAGACAAGCTGGAGCCGCTGTTGAAGG
CGGCAGACTGGGCGGTGATTGAGACTATTCATCCGGTCCTGGAACGGTTC
ATGCAAACGCAGGCTCTGCTAGAGGGCCGCAAGTACGTGACGGGTAGTTT
GGTTGTGCCATTCATCCAAGACCTCCGCGAGAACCTCGAGGACGCGATCG
AGACCTCGATAATCTGGATGTCAGTAATGACGCGGATGTCACTACGGCAA
GAGCGGTGGTGA
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