mRNA_H-elongata_contig98534.17200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98534.17200.1
Unique NamemRNA_H-elongata_contig98534.17200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98534.17200.1 vs. uniprot
Match: A0A7S2UZS7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.240e-29
Identity = 64/116 (55.17%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   34 TYVWPDTQQRYIGQWKSGKRHGHGCHYFYSCAPDDSTGEYXXXXXXXXXXXXEGRYVDADGSEYKGVWVDGVCPEVDFTHIPETGKFQYRFSGGTYEGEWVNRVPHGQGRMVYADG 381
            TY W   +Q Y+             HYF S     +T EY XXXXXXXX   EG+YVDADGS + G W  GVCPE+DF  IPE+G+F+Y+F GGTYEG+W NR+PHG+GRMVY+DG
Sbjct:  183 TYTWASIRQCYVXXXXXXXXXXXXXHYFNSEVAG-ATSEYYXXXXXXXXMWGEGKYVDADGSVHVGTWEKGVCPEIDFNAIPESGQFRYQFQGGTYEGQWRNRMPHGRGRMVYSDG 297
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BLAST of mRNA_H-elongata_contig98534.17200.1 vs. uniprot
Match: A0A6S9EAG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EAG9_HETAK)

HSP 1 Score: 117 bits (293), Expect = 1.570e-28
Identity = 67/116 (57.76%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:   34 TYVWPDTQQRYIGQWKSGKRHGHGCHYFYSCAPDDSTGEYXXXXXXXXXXXXEGRYVDADGSEYKGVWVDGVCPEVDFTHIPETGKFQYRFSGGTYEGEWVNRVPHGQGRMVYADG 381
            TY W   +Q Y+             HYF S AP   + EYXXXXXXXXXXXX  +YVDADGS + G W  GVCPE+DF  IP++G+F+Y+F GGTYEG+W NR+PHG+GRMVYADG
Sbjct:  181 TYAWGSIRQCYVXXXXXXXXXXXXXHYFASDAPGAQS-EYXXXXXXXXXXXXXXKYVDADGSVHLGTWEKGVCPEIDFNAIPDSGQFRYQFQGGTYEGQWANRMPHGKGRMVYADG 295
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BLAST of mRNA_H-elongata_contig98534.17200.1 vs. uniprot
Match: D7G1L7_ECTSI (Morn repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.380e-26
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:   43 WPDTQQRYIGQWKSGKRHGHGCHYFYS------CAPDDSTG-EYXXXXXXXXXXXXEGRYVDADGSEYKGVWVDGVCPEVDFTHIPE-TGKFQYRFSGGTYEGEWVNRVPHGQGRMVYADG 381
            WP T+Q                H F+S      C P+  TG +Y XXXXXXXXXXX G +VDA G  + G+WVDG+CPEVDF+H+PE +G F+Y FSGGTYEGEW+NR PHGQGRM Y+DG
Sbjct:  250 WPSTRQCXXXXXXXXXXXXXXXHDFHSSSAGDDCDPETKTGGDYYXXXXXXXXXXXXGVFVDAGGERHAGLWVDGICPEVDFSHVPEGSGNFRYSFSGGTYEGEWLNRAPHGQGRMEYSDG 370
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BLAST of mRNA_H-elongata_contig98534.17200.1 vs. uniprot
Match: A0A8C6RY50_NANGA (MORN repeat containing 1 n=1 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6RY50_NANGA)

HSP 1 Score: 53.1 bits (126), Expect = 6.280e-6
Identity = 35/120 (29.17%), Postives = 50/120 (41.67%), Query Frame = 1 
Query:   25 GQGTYVWPDTQQRYIGQWKSGKRHGHGCHYFYSCAPDDSTGEYXXXXXXXXXXXXEGRYVDADGSEYKGVWVDGVCPEVDFTHIPETGK-FQYRFSGGTYEGEWVNRVPHGQGRMVYADG 381
            G G YV+P++  RY G+WK GK+HGHG   F                               DG  Y+G +VDG      + H   +G+ F     G  Y+G +     HG G+M + +G
Sbjct:   25 GYGVYVYPNSFFRYEGEWKGGKKHGHGKLLF------------------------------KDGGYYEGEFVDGEITGEGYQHWAWSGQGFLEDQDGQVYQGSFHGNKKHGHGQMFFKNG 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98534.17200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2UZS7_9STRA4.240e-2955.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9EAG9_HETAK1.570e-2857.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G1L7_ECTSI4.380e-2655.37Morn repeat protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A8C6RY50_NANGA6.280e-629.17MORN repeat containing 1 n=1 Tax=Nannospalax galil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98534contigH-elongata_contig98534:390..1195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue6.8e-23
Seed eggNOG ortholog2880.D7G1L7
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-26_000910.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size525
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98534.17200.1prot_H-elongata_contig98534.17200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98534 408..1195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931375.988141-UTR-H-elongata_contig98534:389..4071622931375.988141-UTR-H-elongata_contig98534:389..407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98534 390..407 +
1691679810.818128-UTR-H-elongata_contig98534:389..4071691679810.818128-UTR-H-elongata_contig98534:389..407Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98534 390..407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931376.0039198-CDS-H-elongata_contig98534:407..6981622931376.0039198-CDS-H-elongata_contig98534:407..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98534 408..698 +
1691679810.831345-CDS-H-elongata_contig98534:407..6981691679810.831345-CDS-H-elongata_contig98534:407..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98534 408..698 +
1622931376.018822-CDS-H-elongata_contig98534:979..11951622931376.018822-CDS-H-elongata_contig98534:979..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98534 980..1195 +
1691679810.841154-CDS-H-elongata_contig98534:979..11951691679810.841154-CDS-H-elongata_contig98534:979..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98534 980..1195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98534.17200.1

>prot_H-elongata_contig98534.17200.1 ID=prot_H-elongata_contig98534.17200.1|Name=mRNA_H-elongata_contig98534.17200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
MHGQGTYVWPDTQQRYIGQWKSGKRHGHGCHYFYSCAPDDSTGEYYDGEW
LEGVMHGEGRYVDADGSEYKGVWVDGVCPEVDFTHIPETGKFQYRFSGGT
YEGEWVNRVPHGQGRMVYADGSVYVGGWQDFKFHGQGKLAQKGGVVFEGE
WREGCMHGSGRVEVTSNIN
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mRNA from alignment at H-elongata_contig98534:390..1195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98534.17200.1 ID=mRNA_H-elongata_contig98534.17200.1|Name=mRNA_H-elongata_contig98534.17200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=806bp|location=Sequence derived from alignment at H-elongata_contig98534:390..1195+ (Himanthalia elongata Himel1 dioecious)
AAGTTTAAAAATGGCCAGATGCACGGTCAGGGCACTTACGTCTGGCCTGA
CACCCAGCAACGCTATATTGGGCAGTGGAAAAGCGGGAAAAGGCACGGCC
ACGGTTGCCATTATTTCTACAGCTGCGCACCCGACGATTCGACCGGGGAG
TATTACGATGGCGAGTGGCTGGAAGGCGTTATGCACGGAGAGGGGAGGTA
TGTGGATGCCGATGGGAGCGAGTATAAGGGCGTATGGGTGGACGGTGTCT
GCCCCGAGGTCGACTTCACACACATCCCCGAGACCGGGAAGTTCCAGTAT
CGATTTTCGGTGAGAGTTGCTTCGAGCTCGTGGTCGAGCTCTTGCTTGTG
GAGTTTATAGATCGCAATCTTGGTCGCCAAGAACCCCAAACAGCTTCACT
CTCTCTTTAATGAATTGCTCTGGACAACGAGCCGGATATAAGACGAATTT
GCACGGTGTTTTCGCTCGAGCGAGAAACGCGTGCGCTCTACTCAACAAGG
CACTTACCCTGCACTGACCATTTCTCTCGACGATTACCATTTGGATAGAC
AATATTTATTTCGTACGTCGACGTTGTTATTAACCCGAAGGGCGGAACGT
ACGAAGGAGAGTGGGTCAACCGGGTCCCTCACGGTCAAGGGCGAATGGTG
TATGCCGACGGGAGCGTATACGTCGGCGGGTGGCAGGACTTCAAGTTTCA
TGGGCAAGGGAAGTTGGCGCAGAAGGGAGGCGTGGTGTTCGAGGGAGAGT
GGCGAGAAGGGTGCATGCACGGGTCGGGTCGGGTAGAAGTAACCTCTAAT
ATCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig98534:390..1195+

>mRNA_H-elongata_contig98534.17200.1 ID=mRNA_H-elongata_contig98534.17200.1|Name=mRNA_H-elongata_contig98534.17200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig98534:390..1195+ (Himanthalia elongata Himel1 dioecious)
ATGCACGGTCAGGGCACTTACGTCTGGCCTGACACCCAGCAACGCTATAT
TGGGCAGTGGAAAAGCGGGAAAAGGCACGGCCACGGTTGCCATTATTTCT
ACAGCTGCGCACCCGACGATTCGACCGGGGAGTATTACGATGGCGAGTGG
CTGGAAGGCGTTATGCACGGAGAGGGGAGGTATGTGGATGCCGATGGGAG
CGAGTATAAGGGCGTATGGGTGGACGGTGTCTGCCCCGAGGTCGACTTCA
CACACATCCCCGAGACCGGGAAGTTCCAGTATCGATTTTCGATGCACGGT
CAGGGCACTTACGTCTGGCCTGACACCCAGCAACGCTATATTGGGCAGTG
GAAAAGCGGGAAAAGGCACGGCCACGGTTGCCATTATTTCTACAGCTGCG
CACCCGACGATTCGACCGGGGAGTATTACGATGGCGAGTGGCTGGAAGGC
GTTATGCACGGAGAGGGGAGGTATGTGGATGCCGATGGGAGCGAGTATAA
GGGCGTATGGGTGGACGGTGTCTGCCCCGAGGTCGACTTCACACACATCC
CCGAGACCGGGAAGTTCCAGTATCGATTTTCGGGCGGAACGTACGAAGGA
GAGTGGGTCAACCGGGTCCCTCACGGTCAAGGGCGAATGGTGTATGCCGA
CGGGAGCGTATACGTCGGCGGGTGGCAGGACTTCAAGTTTCATGGGCAAG
GGAAGTTGGCGCAGAAGGGAGGCGTGGTGTTCGAGGGAGAGTGGCGAGAA
GGGTGCATGCACGGGTCGGGTCGGGTAGAAGTAACCTCTAATATCAATGG
CGGAACGTACGAAGGAGAGTGGGTCAACCGGGTCCCTCACGGTCAAGGGC
GAATGGTGTATGCCGACGGGAGCGTATACGTCGGCGGGTGGCAGGACTTC
AAGTTTCATGGGCAAGGGAAGTTGGCGCAGAAGGGAGGCGTGGTGTTCGA
GGGAGAGTGGCGAGAAGGGTGCATGCACGGGTCGGGTCGGGTAGAAGTAA
CCTCTAATATCAAT
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