mRNA_H-elongata_contig98445.17193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98445.17193.1
Unique NamemRNA_H-elongata_contig98445.17193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: D8LCU6_ECTSI (ADP-ribose pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCU6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.490e-44
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 TASVLVSMASSSAGNV--------NLPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            TAS L +MAS SA           +LP+RY+WPRPAVTVDCLIY L+EG +PWILLIKRKN PFKG WALPGGFVD+NE L+AAARRELEEETGVT+R +VQTGAYG+
Sbjct:   71 TASTLPAMASLSASAAGRGGDTAPDLPFRYQWPRPAVTVDCLIYALDEG-KPWILLIKRKNDPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYGD 177          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A6V1NPN0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NPN0_HETAK)

HSP 1 Score: 110 bits (275), Expect = 6.420e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1
Query:   49 NLPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            +LPY+YRWPRP+VT D +I+ +EE   P++LLIKR N PF+G+WALPGGF+D  E LEA A REL+EETGV    L Q GA+G+
Sbjct:   32 DLPYKYRWPRPSVTTDIVIFAVEEA-IPYVLLIKRGNPPFQGSWALPGGFLDLGEGLEACAARELQEETGVAGLPLAQVGAFGD 114          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A098SBX4_9BACT (NUDIX hydrolase n=1 Tax=Phaeodactylibacter xiamenensis TaxID=1524460 RepID=A0A098SBX4_9BACT)

HSP 1 Score: 105 bits (262), Expect = 5.510e-26
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   52 LPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYG 297
            + Y Y +PRPA+TVDC+I+ L+E  Q  +LLI+RKN PF G WALPGGFVD +ESLEAAA RELEEETGV D  + Q   +G
Sbjct:    1 MAYTYEYPRPALTVDCVIFGLDESHQLKVLLIQRKNDPFAGRWALPGGFVDMDESLEAAALRELEEETGVRDVFIEQLFTFG 82          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A2D5NE24_9BACT (Nudix hydrolase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5NE24_9BACT)

HSP 1 Score: 102 bits (254), Expect = 4.260e-25
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   16 VSMASSSAGNVNLPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYG 297
            V+   ++   V +PY Y +PRPAVTVD ++ T +  G   +LLI+R + PF GAWALPGGFVDE E LEAAARRE+ EET  T   ++Q GAYG
Sbjct:   19 VANRRAAGHRVAVPYAYDYPRPAVTVDAVLATADAAGALQVLLIERGHEPFAGAWALPGGFVDEQEDLEAAARREMLEETHTTLGPMLQLGAYG 112          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A2D0NBS3_9BACT (NUDIX hydrolase n=1 Tax=Flavilitoribacter nigricans DSM 23189 = NBRC 102662 TaxID=1122177 RepID=A0A2D0NBS3_9BACT)

HSP 1 Score: 102 bits (255), Expect = 6.100e-25
Identity = 50/83 (60.24%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   52 LPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            +PY Y +PRPA+TVDC+I+ L+E  +  ILLI+R   PFKG WALPGGFVD  E LEAAA RELEEETGV D  + Q   +G+
Sbjct:    1 MPYTYEYPRPALTVDCVIFGLDESNKLKILLIQRALEPFKGDWALPGGFVDMEEDLEAAALRELEEETGVRDVFIEQLYTFGQ 83          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A1M3MSG8_9DELT (Nudix hydrolase domain-containing protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3MSG8_9DELT)

HSP 1 Score: 102 bits (255), Expect = 7.710e-25
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   52 LPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            +P+ YR+PRPAVT D +++T+       +LLIKRK+ PFKG WALPGG+V+ENESLE A  REL EETG+T   L Q GA+G+
Sbjct:    1 MPFSYRYPRPAVTCDAVVFTMRADDLA-VLLIKRKDEPFKGRWALPGGYVNENESLERAVARELAEETGITSARLEQLGAFGD 82          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A1F3K8M2_9BACT (Nudix hydrolase domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3K8M2_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 8.950e-25
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   52 LPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            + Y Y +PRPAVTVDC+I  +    +P ILLIKRK  PFK +WALPGGFVD NE+LE AA RELEEET +TD  L+Q  A+ E
Sbjct:    1 MAYSYEYPRPAVTVDCII--IRNTLKPEILLIKRKFEPFKDSWALPGGFVDSNETLEQAAIRELEEETNITDIDLLQMHAFSE 81          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A7S2XUX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUX9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.070e-24
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   25 ASSSAGNVNLPYRY--RWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            A  +  +   PYRY  RWPRP+VT D  ++T+E+G   W+LLIKR   PF+G WALPGGF+++ E L+A + RELEEET ++   +VQ GA+ +
Sbjct:   10 APGTEDDARTPYRYHYRWPRPSVTTDSAVFTIEDGAA-WVLLIKRLKEPFQGCWALPGGFLEDMEGLDACSARELEEETSISGLPMVQVGAFAD 102          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A813AIJ9_9DINO (NudF protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AIJ9_9DINO)

HSP 1 Score: 100 bits (248), Expect = 2.150e-24
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   25 ASSSAGNVNLPYRYRWPRPAVTVDCLIYTLE-EGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYG 297
            A S+AG     Y Y+WPRPAVTVD LI+ +  E     ILLI+R   PFKG+WALPGGFVD++E L+ AA RELEEET  T   LVQ GA+G
Sbjct:    3 AVSTAG-----YTYKWPRPAVTVDTLIFNVHGETKDLRILLIERGGEPFKGSWALPGGFVDQDEDLDVAAARELEEETSTTGLPLVQFGAFG 89          
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Match: A0A6C1QFY3_9BACT (NUDIX hydrolase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6C1QFY3_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 2.170e-24
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   52 LPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFKGAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE 300
            + Y Y +PRPAVT D +++ L EG    ILLI+RKN PFKG WALPGGFVD  E+LE  A REL+EETG+ +  L   GA+ E
Sbjct:    1 MSYTYEYPRPAVTTDAVVFKLTEGENLHILLIQRKNEPFKGQWALPGGFVDMEETLEQCAARELKEETGIKNIKLYPLGAFSE 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98445.17193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU6_ECTSI3.490e-4471.30ADP-ribose pyrophosphatase n=2 Tax=Ectocarpus TaxI... [more]
A0A6V1NPN0_HETAK6.420e-2860.71Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A098SBX4_9BACT5.510e-2662.20NUDIX hydrolase n=1 Tax=Phaeodactylibacter xiamene... [more]
A0A2D5NE24_9BACT4.260e-2554.26Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A2D0NBS3_9BACT6.100e-2560.24NUDIX hydrolase n=1 Tax=Flavilitoribacter nigrican... [more]
A0A1M3MSG8_9DELT7.710e-2557.83Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A1F3K8M2_9BACT8.950e-2561.45Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S2XUX9_9STRA1.070e-2448.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A813AIJ9_9DINO2.150e-2458.70NudF protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A6C1QFY3_9BACT2.170e-2456.63NUDIX hydrolase n=1 Tax=Bacteroidetes bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98445contigH-elongata_contig98445:241..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue6.2e-34
Seed eggNOG ortholog2880.D8LCU6
KEGG koko:K03574
EggNOG free text desc.NUDIX domain
EggNOG OGs2S8UU@2759,COG1051@1
EC3.6.1.55
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADP-ribose pyrophosphatase
Ec32 orthologEc-07_006940.1
Exons2
Model size300
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98445.17193.1prot_H-elongata_contig98445.17193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98445 241..790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931375.1537085-CDS-H-elongata_contig98445:240..3501622931375.1537085-CDS-H-elongata_contig98445:240..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98445 241..350 -
1691679810.4239228-CDS-H-elongata_contig98445:240..3501691679810.4239228-CDS-H-elongata_contig98445:240..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98445 241..350 -
1622931375.1724796-CDS-H-elongata_contig98445:621..7901622931375.1724796-CDS-H-elongata_contig98445:621..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98445 622..790 -
1691679810.435181-CDS-H-elongata_contig98445:621..7901691679810.435181-CDS-H-elongata_contig98445:621..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98445 622..790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931375.1938007-UTR-H-elongata_contig98445:790..8111622931375.1938007-UTR-H-elongata_contig98445:790..811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98445 791..811 -
1691679810.4442282-UTR-H-elongata_contig98445:790..8111691679810.4442282-UTR-H-elongata_contig98445:790..811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig98445 791..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98445.17193.1

>prot_H-elongata_contig98445.17193.1 ID=prot_H-elongata_contig98445.17193.1|Name=mRNA_H-elongata_contig98445.17193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MASSSAGNVNLPYRYRWPRPAVTVDCLIYTLEEGGQPWILLIKRKNSPFK
GAWALPGGFVDENESLEAAARRELEEETGVTDRALVQTGAYGE
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mRNA from alignment at H-elongata_contig98445:241..811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98445.17193.1 ID=mRNA_H-elongata_contig98445.17193.1|Name=mRNA_H-elongata_contig98445.17193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=571bp|location=Sequence derived from alignment at H-elongata_contig98445:241..811- (Himanthalia elongata Himel1 dioecious)
ACGGCTTCGGTTTTGGTTTCGATGGCGTCGTCTTCAGCAGGGAATGTAAA CCTTCCGTACAGGTACCGGTGGCCCCGCCCCGCCGTGACGGTCGACTGCC TTATTTACACTCTCGAGGAAGGAGGGCAACCTTGGATACTCCTGATTAAG CGAAAGAACAGTCCGTTCAAAGGGGCGTGGGCTCTCCCCGGTGAGCTGTT GAGGAGGCCTTGGGGGATGGAGGACGGGGTGGGCTAGAATCGTCGGCCAG CCGCGAGAGCAAGCCCTAACCGAGAAGCCTTCGAATTCCGCAGATTTTCG TCAAAATCCTTGTGAGGCATCATCATGTAGCGTGGTACGTGATAAATATA TATATATATATATATATACATTATCTCAGATTTTCTTCATCGCCTTGCGC ACACCGCGGCTCGGCTCAGCTAAACTTTTGTGAGCTCCCGCGCTGTGCCG TGTTTTTCGAGGCGGCTTCGTGGACGAAAACGAGAGCCTTGAGGCCGCCG CTCGGAGGGAGTTAGAGGAAGAGACCGGCGTCACGGATCGAGCCTTGGTG CAGACCGGGGCGTACGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig98445:241..811-

>mRNA_H-elongata_contig98445.17193.1 ID=mRNA_H-elongata_contig98445.17193.1|Name=mRNA_H-elongata_contig98445.17193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig98445:241..811- (Himanthalia elongata Himel1 dioecious)
ATGGCGTCGTCTTCAGCAGGGAATGTAAACCTTCCGTACAGGTACCGGTG
GCCCCGCCCCGCCGTGACGGTCGACTGCCTTATTTACACTCTCGAGGAAG
GAGGGCAACCTTGGATACTCCTGATTAAGCGAAAGAACAGTCCGTTCAAA
GGGGCGTGGGCTCTCCCCGATGGCGTCGTCTTCAGCAGGGAATGTAAACC
TTCCGTACAGGTACCGGTGGCCCCGCCCCGCCGTGACGGTCGACTGCCTT
ATTTACACTCTCGAGGAAGGAGGGCAACCTTGGATACTCCTGATTAAGCG
AAAGAACAGTCCGTTCAAAGGGGCGTGGGCTCTCCCCGGCGGCTTCGTGG
ACGAAAACGAGAGCCTTGAGGCCGCCGCTCGGAGGGAGTTAGAGGAAGAG
ACCGGCGTCACGGATCGAGCCTTGGTGCAGACCGGGGCGTACGGTGAGGC
GGCTTCGTGGACGAAAACGAGAGCCTTGAGGCCGCCGCTCGGAGGGAGTT
AGAGGAAGAGACCGGCGTCACGGATCGAGCCTTGGTGCAGACCGGGGCGT
ACGGTGAG
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