mRNA_H-elongata_contig98207.17169.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98207.17169.1
Unique NamemRNA_H-elongata_contig98207.17169.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98207.17169.1 vs. uniprot
Match: A0A5K1BAV5_9MAGN (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1BAV5_9MAGN)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-11
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   16 CQYSLYKTGNFKDYVFLPYAQNMSPADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSDRNWSLYGDVMGGRHARMGPKRARKLVFVRAKLRL 291
            C+Y+ +  G+F         ++MSP DWW +YG   +P L K+A+R  S+   S+  +RNWS+YG +   +  ++  +RA  LV+V + LRL
Sbjct:    2 CEYNKFSLGDFNSEGAAQAREDMSPFDWWASYGS-EMPVLHKLALRLLSQPVTSSCCERNWSIYGHIHNIKRNKLISQRAEDLVYVHSNLRL 92
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BLAST of mRNA_H-elongata_contig98207.17169.1 vs. uniprot
Match: A0A2K3LIK7_TRIPR (Uncharacterized protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LIK7_TRIPR)

HSP 1 Score: 66.6 bits (161), Expect = 1.060e-10
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   40 GNFKDYVFLPYAQNMSPADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSDRNWSLYGDVMGGRHARMGPKRARKLVFVRAKLRL 291
            G F  +  L    N++P +WWVTYG   +P L  +A++  S+  +S+ ++RNWS YG +   +  ++ PKRA  LV++   LRL
Sbjct:  483 GEFGQFDSLLDRWNLTPKEWWVTYGS-SIPKLQSIALKLFSQPTSSSSAERNWSTYGFIQSMKRNKLNPKRAEDLVYIHTNLRL 565
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BLAST of mRNA_H-elongata_contig98207.17169.1 vs. uniprot
Match: A0A5K1G3Y4_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1G3Y4_9MAGN)

HSP 1 Score: 65.9 bits (159), Expect = 1.960e-10
Identity = 33/92 (35.87%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:   16 CQYSLYKTGNFKDYVFLPYAQNMSPADWWVTYGKIGLPDLAKVAIRTTSKVPASAGSDRNWSLYGDVMGGRHARMGPKRARKLVFVRAKLRL 291
            C+Y+ +  G+F         ++MSP DWW +YG   +P L K+A+R  S+   S+  +RNWS+YG +   +  ++  +RA  LV+V + LRL
Sbjct:  447 CEYNKFSLGDFNSEGAAQAREDMSPFDWWASYGS-EMPVLHKLALRLLSQPVTSSCCERNWSIYGHIHNIKRNKLTSQRAEDLVYVHSNLRL 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98207.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5K1BAV5_9MAGN1.210e-1135.87Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A2K3LIK7_TRIPR1.060e-1036.90Uncharacterized protein n=1 Tax=Trifolium pratense... [more]
A0A5K1G3Y4_9MAGN1.960e-1035.87Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98207contigH-elongata_contig98207:1082..1378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931372.9804802-CDS-H-elongata_contig98207:1081..13781622931372.9804802-CDS-H-elongata_contig98207:1081..1378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98207 1082..1378 -
1691679809.610385-CDS-H-elongata_contig98207:1081..13781691679809.610385-CDS-H-elongata_contig98207:1081..1378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98207 1082..1378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98207.17169.1prot_H-elongata_contig98207.17169.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98207 1082..1378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98207.17169.1

>prot_H-elongata_contig98207.17169.1 ID=prot_H-elongata_contig98207.17169.1|Name=mRNA_H-elongata_contig98207.17169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
VAREACQYSLYKTGNFKDYVFLPYAQNMSPADWWVTYGKIGLPDLAKVAI
RTTSKVPASAGSDRNWSLYGDVMGGRHARMGPKRARKLVFVRAKLRLQD
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mRNA from alignment at H-elongata_contig98207:1082..1378-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98207.17169.1 ID=mRNA_H-elongata_contig98207.17169.1|Name=mRNA_H-elongata_contig98207.17169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig98207:1082..1378- (Himanthalia elongata Himel1 dioecious)
GTGGCGAGGGAAGCATGTCAGTATAGCCTCTACAAGACCGGTAACTTTAA
GGACTACGTGTTCTTGCCGTACGCCCAGAACATGTCCCCCGCAGACTGGT
GGGTAACGTACGGGAAGATCGGCCTGCCGGACTTGGCCAAAGTAGCCATT
CGCACGACTTCAAAGGTACCTGCATCGGCAGGATCGGATCGCAATTGGAG
TCTGTACGGAGATGTCATGGGCGGAAGGCACGCACGGATGGGCCCCAAGC
GTGCCAGGAAGTTGGTGTTCGTGAGGGCTAAACTGAGACTGCAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig98207:1082..1378-

>mRNA_H-elongata_contig98207.17169.1 ID=mRNA_H-elongata_contig98207.17169.1|Name=mRNA_H-elongata_contig98207.17169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig98207:1082..1378- (Himanthalia elongata Himel1 dioecious)
GTGGCGAGGGAAGCATGTCAGTATAGCCTCTACAAGACCGGTAACTTTAA
GGACTACGTGTTCTTGCCGTACGCCCAGAACATGTCCCCCGCAGACTGGT
GGGTAACGTACGGGAAGATCGGCCTGCCGGACTTGGCCAAAGTAGCCATT
CGCACGACTTCAAAGGTACCTGCATCGGCAGGATCGGATCGCAATTGGAG
TCTGTACGGAGATGTCATGGGCGGAAGGCACGCACGGATGGGCCCCAAGC
GTGCCAGGAAGTTGGTGTTCGTGAGGGCTAAACTGAGACTGCAGGATGTG
GCGAGGGAAGCATGTCAGTATAGCCTCTACAAGACCGGTAACTTTAAGGA
CTACGTGTTCTTGCCGTACGCCCAGAACATGTCCCCCGCAGACTGGTGGG
TAACGTACGGGAAGATCGGCCTGCCGGACTTGGCCAAAGTAGCCATTCGC
ACGACTTCAAAGGTACCTGCATCGGCAGGATCGGATCGCAATTGGAGTCT
GTACGGAGATGTCATGGGCGGAAGGCACGCACGGATGGGCCCCAAGCGTG
CCAGGAAGTTGGTGTTCGTGAGGGCTAAACTGAGACTGCAGGAT
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