mRNA_H-elongata_contig98042.17153.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98042.17153.1
Unique NamemRNA_H-elongata_contig98042.17153.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   25 VLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHR 141
            VL L+LYP SWSHVYIPVLPEALLGVL+APMPFLIGVHR
Sbjct:  443 VLTLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHR 481
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-14
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:   22 KVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHR 141
            +VL L+LYP SWSHVYIPVLPEALLGVL+APMPFLIGVHR
Sbjct:  244 EVLSLVLYPLSWSHVYIPVLPEALLGVLAAPMPFLIGVHR 283
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   22 KVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVH 138
            +VL  LLYP  W+HVYIPVLPE L+GVL APMPF++GVH
Sbjct:  293 EVLTTLLYPLCWTHVYIPVLPEPLMGVLGAPMPFIVGVH 331
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: A0A0H5R8J7_9EUKA (UDENN domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R8J7_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   31 VLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHR 141
            +LL+YPF W HVYIP+LPEALL  L+APMPFLIG H 
Sbjct:  394 LLLMYPFRWQHVYIPLLPEALLDFLNAPMPFLIGTHH 430
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   22 KVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHR 141
            +V+  LLYPF WSHVYIP+LP+A+L VL AP+PF+IGVH 
Sbjct:  251 EVMRALLYPFCWSHVYIPLLPKAMLMVLQAPLPFMIGVHE 290
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: A0A0G4IP83_PLABS (UDENN domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IP83_PLABS)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   22 KVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVH 138
            +  +LL+YPF W HVYIP+LPEALL  L+APMP+LIG H
Sbjct:  341 ETFLLLMYPFRWQHVYIPLLPEALLDFLNAPMPYLIGTH 379
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: S4RUT0_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUT0_PETMA)

HSP 1 Score: 59.3 bits (142), Expect = 2.840e-9
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   28 LVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVH 138
            L LLLYP SW HVYIP+LP  LL   SAPMPFLIGVH
Sbjct:  191 LALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 227
[Close]
BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: S4RUS8_PETMA (UDENN domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RUS8_PETMA)

HSP 1 Score: 59.3 bits (142), Expect = 3.260e-9
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   28 LVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVH 138
            L LLLYP SW HVYIP+LP  LL   SAPMPFLIGVH
Sbjct:  207 LALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 243
[Close]
BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: A0A0L0FY96_9EUKA (UDENN domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FY96_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   37 LLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHR 141
            LLYP SW H++IPVLPE LL  ++APMPFL+GVH+
Sbjct:  236 LLYPLSWQHIFIPVLPEQLLDYVTAPMPFLVGVHK 270
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BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Match: UPI0014042311 (DENN domain-containing protein 1B-like isoform X1 n=4 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014042311)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   28 LVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVH 138
            L LLLYP SW HVYIP+LP  LL   SAPMPFLIGVH
Sbjct:  217 LALLLYPMSWQHVYIPLLPPHLLEYCSAPMPFLIGVH 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98042.17153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMA5_9PHAE1.400e-1489.74UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FMH7_ECTSI1.400e-1487.50UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA3.430e-1171.79UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A0H5R8J7_9EUKA4.180e-1072.97UDENN domain-containing protein n=1 Tax=Spongospor... [more]
A0A7S2RHS4_9STRA4.180e-1067.50Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0G4IP83_PLABS7.810e-1066.67UDENN domain-containing protein n=1 Tax=Plasmodiop... [more]
S4RUT0_PETMA2.840e-975.68UDENN domain-containing protein n=1 Tax=Petromyzon... [more]
S4RUS8_PETMA3.260e-975.68UDENN domain-containing protein n=1 Tax=Petromyzon... [more]
A0A0L0FY96_9EUKA5.100e-968.57UDENN domain-containing protein n=1 Tax=Sphaerofor... [more]
UPI00140423115.100e-975.68DENN domain-containing protein 1B-like isoform X1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98042contigH-elongata_contig98042:1747..1890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7FMH7
KEGG koko:K20163
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorysignal peptide
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931371.6255677-CDS-H-elongata_contig98042:1746..18901622931371.6255677-CDS-H-elongata_contig98042:1746..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98042 1747..1890 +
1691679809.0727232-CDS-H-elongata_contig98042:1746..18901691679809.0727232-CDS-H-elongata_contig98042:1746..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98042 1747..1890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98042.17153.1prot_H-elongata_contig98042.17153.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98042 1747..1890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98042.17153.1

>prot_H-elongata_contig98042.17153.1 ID=prot_H-elongata_contig98042.17153.1|Name=mRNA_H-elongata_contig98042.17153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
SRAAIPPKVLVLLLYPFSWSHVYIPVLPEALLGVLSAPMPFLIGVHR*
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mRNA from alignment at H-elongata_contig98042:1747..1890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98042.17153.1 ID=mRNA_H-elongata_contig98042.17153.1|Name=mRNA_H-elongata_contig98042.17153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig98042:1747..1890+ (Himanthalia elongata Himel1 dioecious)
TCCCGCGCCGCTATACCCCCAAAGGTATTGGTGCTACTGCTGTACCCCTT
CAGCTGGAGCCACGTATACATTCCCGTGCTACCGGAGGCGCTACTGGGGG
TGTTGTCCGCCCCTATGCCGTTCCTGATCGGTGTGCACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig98042:1747..1890+

>mRNA_H-elongata_contig98042.17153.1 ID=mRNA_H-elongata_contig98042.17153.1|Name=mRNA_H-elongata_contig98042.17153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig98042:1747..1890+ (Himanthalia elongata Himel1 dioecious)
TCCCGCGCCGCTATACCCCCAAAGGTATTGGTGCTACTGCTGTACCCCTT
CAGCTGGAGCCACGTATACATTCCCGTGCTACCGGAGGCGCTACTGGGGG
TGTTGTCCGCCCCTATGCCGTTCCTGATCGGTGTGCACCGGTGATCCCGC
GCCGCTATACCCCCAAAGGTATTGGTGCTACTGCTGTACCCCTTCAGCTG
GAGCCACGTATACATTCCCGTGCTACCGGAGGCGCTACTGGGGGTGTTGT
CCGCCCCTATGCCGTTCCTGATCGGTGTGCACCGGTGA
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