mRNA_H-elongata_contig98.17151.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 132 bits (332), Expect = 1.450e-30 Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 1
Query: 40 VYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE-YQKFP-------GAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNIL 525
V+E+V RP+D+ ++G+K + K K G DG+VEKYK RLVAQGF QVEG+ Y E ++P + +I +L A AA D E+ D + AFL + EE Y K P A+ RL KA+YGL Q R W K ++ +GF + +A CVF K +D ++ V DN++
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMV 1195
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 130 bits (326), Expect = 8.220e-30 Identity = 71/190 (37.37%), Postives = 111/190 (58.42%), Query Frame = 1
Query: 1 AEDTEMCDMVENYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEEYQK---------FPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVV-DGEAEVVVVVHVDNILTHAKD 540
A D+E ++EN +E V+ PK K VVG+K + K K ++G V++YK RLVAQG+ Q EGV Y+E +SP I L A + AK+ E+ D + AFL+ + E Y + P + +L K+IYGL Q+ RCWNN + + G++Q ++ PC++ K + D +++ +HVD+IL + D
Sbjct: 741 ATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDILLFSND 930
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO) HSP 1 Score: 124 bits (312), Expect = 6.150e-28 Identity = 63/175 (36.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 34 NYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE----------YQKFPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNILT 528
N+VY+ V P + +GTK ++K+K+ DG ++KYK RLV QGF Q GV Y + ++P + + ++FA +AAK+ E+ + D + AFL + E+ + PG + +LNK++YGL Q CWN K + A+G++ K PC+F K+ +G+ ++ ++VD+ILT
Sbjct: 608 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGKDFSIIGLYVDDILT 781
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO) HSP 1 Score: 124 bits (312), Expect = 6.160e-28 Identity = 63/175 (36.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 34 NYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE----------YQKFPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNILT 528
N+VY+ V P + +GTK ++K+K+ DG ++KYK RLV QGF Q GV Y + ++P + + ++FA +AAK+ E+ + D + AFL + E+ + PG + +LNK++YGL Q CWN K + A+G++ K PC+F K+ +G+ ++ ++VD+ILT
Sbjct: 921 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGKDFSIIGLYVDDILT 1094
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO) HSP 1 Score: 124 bits (312), Expect = 6.760e-28 Identity = 63/175 (36.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 34 NYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE----------YQKFPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNILT 528
N+VY+ V P + +GTK ++K+K+ DG ++KYK RLV QGF Q GV Y + ++P + + ++FA +AAK+ E+ + D + AFL + E+ + PG + +LNK++YGL Q CWN K + A+G++ K PC+F K+ +G+ ++ ++VD+ILT
Sbjct: 1901 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGKDFSIIGLYVDDILT 2074
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO) HSP 1 Score: 124 bits (312), Expect = 6.900e-28 Identity = 63/175 (36.00%), Postives = 105/175 (60.00%), Query Frame = 1
Query: 34 NYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE----------YQKFPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNILT 528
N+VY+ V P + +GTK ++K+K+ DG ++KYK RLV QGF Q GV Y + ++P + + ++FA +AAK+ E+ + D + AFL + E+ + PG + +LNK++YGL Q CWN K + A+G++ K PC+F K+ +G+ ++ ++VD+ILT
Sbjct: 2393 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI-NGKDFSIIGLYVDDILT 2566
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.160e-27 Identity = 64/169 (37.87%), Postives = 97/169 (57.40%), Query Frame = 1
Query: 61 PKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE-YQKFPGAMG-------RLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNILTHAKDK 543
P+ + VG+K K ++GK+EK+K RLVA+G WQ+ V Y +SP P + +I ++ A A+ K L ++D +QA+ A + EE + K P G + +AIYGL +GR W + GFEQ KA PCVFRK+VD +++V++VD+IL D+
Sbjct: 410 PEGRRPVGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 578
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 120 bits (301), Expect = 1.450e-26 Identity = 69/179 (38.55%), Postives = 103/179 (57.54%), Query Frame = 1
Query: 13 EMCDMVENYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE--------YQKFPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNIL 525
E+ V+ +Y++V RP+D+ VVG K + + K G DG++EKYK R+VA+GF QVEGV YT+ ++P A+I L A AA D E+ D + AFL + EE +Q + +L KA+YGL Q R W K + ++GF + A VF K DG ++V V++D++L
Sbjct: 304 ELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVL-LIVAVYIDDML 481
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT) HSP 1 Score: 119 bits (297), Expect = 5.380e-26 Identity = 64/168 (38.10%), Postives = 99/168 (58.93%), Query Frame = 1
Query: 1 AEDTEMCDMVENYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEEY----------QKFPGAMGRLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKV 474
A D+E ++EN +E V+ PK K VVG+K + K K ++G V++YK RLVAQG+ Q EGV Y+E +SP I L A + AK+ E+ D + AFL+ + EE ++ P + +L K+IYGL Q+ RCWNN + + G++Q ++ PC++ +V
Sbjct: 828 ATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYNEV 995
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 112 bits (279), Expect = 7.650e-26 Identity = 61/154 (39.61%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 106 KVGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSTAAIWMLFATAAAKDGELRYFDAEQAFLKAGIPEE-YQKFPGAMG-------RLNKAIYGLVQTGRCWNNKFCGDMAAIGFEQEKAGPCVFRKVVDGEAEVVVVVHVDNILTHAKDK 543
K ++GKV+K+K LVA+GF Q+ V + SP PS+A+I ++ A A K L ++D +QA+ A + EE + + P G + +AIYGL Q+GR W + GFEQ KA PCVFRK+VD +V+V++VD+IL D+
Sbjct: 10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98.17151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig98.17151.1 >prot_H-elongata_contig98.17151.1 ID=prot_H-elongata_contig98.17151.1|Name=mRNA_H-elongata_contig98.17151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp MCDMVENYVYEQVTRPKDKLVVGTKILVKQKVGQDGKVEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig98:24103..25067- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig98.17151.1 ID=mRNA_H-elongata_contig98.17151.1|Name=mRNA_H-elongata_contig98.17151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig98:24103..25067- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig98:24103..25067- >mRNA_H-elongata_contig98.17151.1 ID=mRNA_H-elongata_contig98.17151.1|Name=mRNA_H-elongata_contig98.17151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig98:24103..25067- (Himanthalia elongata Himel1 dioecious)back to top |