mRNA_H-elongata_contig97979.17149.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97979.17149.1
Unique NamemRNA_H-elongata_contig97979.17149.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97979.17149.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.230e-17
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 QEKSKAALNKVPQRTMVENEHLLREKILGSIGGGPFELLRAFRRMHRGRGTV 156
            Q K KAA  +VP+RTM ENE LLR+KILGSIGGGPF+LLRAFR+MHRGRGTV
Sbjct:  244 QAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTV 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97979.17149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWU7_ECTSI3.230e-1778.85EF-hand, calcium binding motif n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97979contigH-elongata_contig97979:896..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog2880.D7FWU7
EggNOG free text desc.EF-hand domain pair
EggNOG OGs28PG7@1,2QW47@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.8266706-CDS-H-elongata_contig97979:895..10721622931370.8266706-CDS-H-elongata_contig97979:895..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97979 896..1072 -
1691679808.7658257-CDS-H-elongata_contig97979:895..10721691679808.7658257-CDS-H-elongata_contig97979:895..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97979 896..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97979.17149.1prot_H-elongata_contig97979.17149.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97979 896..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97979.17149.1

>prot_H-elongata_contig97979.17149.1 ID=prot_H-elongata_contig97979.17149.1|Name=mRNA_H-elongata_contig97979.17149.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QEKSKAALNKVPQRTMVENEHLLREKILGSIGGGPFELLRAFRRMHRGRG
TVRRPGYK*
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mRNA from alignment at H-elongata_contig97979:896..1072-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97979.17149.1 ID=mRNA_H-elongata_contig97979.17149.1|Name=mRNA_H-elongata_contig97979.17149.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig97979:896..1072- (Himanthalia elongata Himel1 dioecious)
CAGGAGAAGTCAAAAGCGGCCTTGAACAAAGTTCCCCAGCGCACCATGGT
AGAAAACGAGCATCTCCTGCGCGAAAAAATCCTCGGAAGCATCGGCGGCG
GTCCGTTCGAGCTCCTACGGGCTTTTCGGAGGATGCACCGCGGCCGGGGA
ACGGTAAGGAGACCAGGATATAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig97979:896..1072-

>mRNA_H-elongata_contig97979.17149.1 ID=mRNA_H-elongata_contig97979.17149.1|Name=mRNA_H-elongata_contig97979.17149.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig97979:896..1072- (Himanthalia elongata Himel1 dioecious)
CAGGAGAAGTCAAAAGCGGCCTTGAACAAAGTTCCCCAGCGCACCATGGT
AGAAAACGAGCATCTCCTGCGCGAAAAAATCCTCGGAAGCATCGGCGGCG
GTCCGTTCGAGCTCCTACGGGCTTTTCGGAGGATGCACCGCGGCCGGGGA
ACGGTAAGGAGACCAGGATATAAATAACAGGAGAAGTCAAAAGCGGCCTT
GAACAAAGTTCCCCAGCGCACCATGGTAGAAAACGAGCATCTCCTGCGCG
AAAAAATCCTCGGAAGCATCGGCGGCGGTCCGTTCGAGCTCCTACGGGCT
TTTCGGAGGATGCACCGCGGCCGGGGAACGGTAAGGAGACCAGGATATAA
ATAA
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