mRNA_H-elongata_contig97968.17147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97968.17147.1
Unique NamemRNA_H-elongata_contig97968.17147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: D7FXM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM3_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 5.520e-14
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 RERAEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAPR 150
            R  AEFCL H+  L GK VLELGAG+GMTG AVAA CGA EVVLTD+APR
Sbjct:  178 RALAEFCLAHSGLLRGKRVLELGAGIGMTGMAVAATCGAAEVVLTDYAPR 227
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A6H5JKR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.470e-13
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   13 EFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAPR 150
            EFCL H+  L GK VLELGAG+GMTG AVAA CGA EVVLTD+APR
Sbjct:    3 EFCLAHSGLLRGKRVLELGAGIGMTGMAVAASCGAAEVVLTDYAPR 48
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A2D4CDJ9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDJ9_PYTIN)

HSP 1 Score: 52.8 bits (125), Expect = 1.180e-6
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   10 AEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAPR 150
            AEF L H    E +SVLELGAGVG+TG  +  C   R ++L+D+AP+
Sbjct:  166 AEFALAHRELFENRSVLELGAGVGITGIIIGKCIAVRRLLLSDYAPK 212
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: D0MRZ6_PHYIT (FAM86 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MRZ6_PHYIT)

HSP 1 Score: 52.0 bits (123), Expect = 2.190e-6
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   10 AEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAP 147
            AE+ + H     G++VLELGAGVG TG A+A  C +  VVLTD+AP
Sbjct:  148 AEYVIAHKSEFHGRNVLELGAGVGFTGIALACVCRSSRVVLTDYAP 193
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A329SVC4_9STRA (FAM86 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SVC4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.000e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   10 AEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAP 147
            AE+ + H     G+ VLELGAGVG TG A+A  C +  VVLTD+AP
Sbjct:  148 AEYIIAHESEFRGRKVLELGAGVGFTGMALACVCRSSRVVLTDYAP 193
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A8K1CD26_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD26_PYTOL)

HSP 1 Score: 50.8 bits (120), Expect = 5.640e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   10 AEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAPR 150
            AE+   H    E ++VLELGAGVG TG A+A C   ++++L+D+APR
Sbjct:  161 AEYIFAHPEQFEDRTVLELGAGVGFTGIALAKCVRTKKLILSDYAPR 207
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A7S4JW17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JW17_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.030e-6
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   10 AEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDH 141
            AEF  VH ++++G+ V+ELGAGV +TG A+A  CG   V +TD+
Sbjct:   89 AEFLAVHPNYVKGRRVIELGAGVALTGIAIAGLCGPTHVHMTDY 132
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A1Y1I2L6_KLENI (Calmodulin-lysine N-methyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2L6_KLENI)

HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   16 FCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAPR 150
            +C  H    +G+ VLELGAG G+ G AVAAC  A EVV+TD  P+
Sbjct:  131 YCSQHPELFQGRRVLELGAGYGLAGLAVAACTEAGEVVITDGNPQ 175
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A6P5GQE8_ANACO (protein N-lysine methyltransferase METTL21A n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GQE8_ANACO)

HSP 1 Score: 48.5 bits (114), Expect = 3.180e-5
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   16 FCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDH 141
            F  +HA  LEG+SV+ELG+GVG+TG   +  C  REVVLTDH
Sbjct:   66 FLSLHAEILEGRSVIELGSGVGITGILCSRLC--REVVLTDH 105
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BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Match: A0A199V4K7_ANACO (Protein N-lysine methyltransferase METTL21A n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199V4K7_ANACO)

HSP 1 Score: 48.5 bits (114), Expect = 3.300e-5
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   16 FCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDH 141
            F  +HA  LEG+SV+ELG+GVG+TG   +  C  REVVLTDH
Sbjct:   66 FLSLHAEILEGRSVIELGSGVGITGILCSRLC--REVVLTDH 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97968.17147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FXM3_ECTSI5.520e-1474.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKR7_9PHAE2.470e-1376.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4CDJ9_PYTIN1.180e-651.06Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0MRZ6_PHYIT2.190e-654.35FAM86 domain-containing protein n=2 Tax=Phytophtho... [more]
A0A329SVC4_9STRA3.000e-654.35FAM86 domain-containing protein n=2 Tax=Phytophtho... [more]
A0A8K1CD26_PYTOL5.640e-648.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4JW17_9STRA6.030e-650.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1Y1I2L6_KLENI2.730e-553.33Calmodulin-lysine N-methyltransferase n=1 Tax=Kleb... [more]
A0A6P5GQE8_ANACO3.180e-559.52protein N-lysine methyltransferase METTL21A n=2 Ta... [more]
A0A199V4K7_ANACO3.300e-559.52Protein N-lysine methyltransferase METTL21A n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97968contigH-elongata_contig97968:1936..2088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue8.1e-12
Seed eggNOG ortholog2880.D7FXM3
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.7361212-CDS-H-elongata_contig97968:1935..20881622931370.7361212-CDS-H-elongata_contig97968:1935..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97968 1936..2088 +
1691679808.7328231-CDS-H-elongata_contig97968:1935..20881691679808.7328231-CDS-H-elongata_contig97968:1935..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97968 1936..2088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97968.17147.1prot_H-elongata_contig97968.17147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97968 1936..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97968.17147.1

>prot_H-elongata_contig97968.17147.1 ID=prot_H-elongata_contig97968.17147.1|Name=mRNA_H-elongata_contig97968.17147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
RERAEFCLVHAHWLEGKSVLELGAGVGMTGAAVAACCGAREVVLTDHAPR
*
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mRNA from alignment at H-elongata_contig97968:1936..2088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97968.17147.1 ID=mRNA_H-elongata_contig97968.17147.1|Name=mRNA_H-elongata_contig97968.17147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig97968:1936..2088+ (Himanthalia elongata Himel1 dioecious)
CGAGAGAGGGCAGAGTTTTGTCTTGTCCACGCCCACTGGCTTGAGGGCAA
GAGCGTGCTGGAGCTCGGAGCCGGTGTCGGCATGACCGGCGCGGCGGTGG
CTGCTTGCTGCGGCGCACGCGAGGTCGTTCTCACCGATCACGCGCCGAGG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig97968:1936..2088+

>mRNA_H-elongata_contig97968.17147.1 ID=mRNA_H-elongata_contig97968.17147.1|Name=mRNA_H-elongata_contig97968.17147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig97968:1936..2088+ (Himanthalia elongata Himel1 dioecious)
CGAGAGAGGGCAGAGTTTTGTCTTGTCCACGCCCACTGGCTTGAGGGCAA
GAGCGTGCTGGAGCTCGGAGCCGGTGTCGGCATGACCGGCGCGGCGGTGG
CTGCTTGCTGCGGCGCACGCGAGGTCGTTCTCACCGATCACGCGCCGAGG
TGACGAGAGAGGGCAGAGTTTTGTCTTGTCCACGCCCACTGGCTTGAGGG
CAAGAGCGTGCTGGAGCTCGGAGCCGGTGTCGGCATGACCGGCGCGGCGG
TGGCTGCTTGCTGCGGCGCACGCGAGGTCGTTCTCACCGATCACGCGCCG
AGGTGA
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