mRNA_H-elongata_contig9794.17143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9794.17143.1
Unique NamemRNA_H-elongata_contig9794.17143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A6H5KP52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP52_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 9.270e-85
Identity = 121/176 (68.75%), Postives = 140/176 (79.55%), Query Frame = 1
Query:    4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGG---GFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHVDGYGFNTDG 522
            +YACP  CS  GACRNMREMGMM TA PLVN +  + SS  G    GF V+YGW SP G  TW+S S+FGCVCDSSWEVGLG GQTQ+A++FG DCS+ HCP+GDDP+T +DETDC NKTA GG GVG+ GN CHVDCSNRG+CD++TGVCSCF+GYHG AC+ K  DGYGFNT G
Sbjct:  409 KYACPEDCSGNGACRNMREMGMMRTAEPLVNSSTEASSSSRGDSADGFEVVYGWDSPEGTATWESRSMFGCVCDSSWEVGLGRGQTQQAQYFGPDCSMLHCPTGDDPDTLIDETDCENKTADGGRGVGSAGNLCHVDCSNRGICDYTTGVCSCFDGYHGQACNSKQSDGYGFNTVG 584          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: D8LCI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI8_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 1.050e-77
Identity = 113/166 (68.07%), Postives = 131/166 (78.92%), Query Frame = 1
Query:    1 DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGG---GFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMK 489
            +RYACP  CS  GACRNMREMGMM TA PLVN +  + SS  G    GF V+YGW SP G  TW+S SVFGCVCDSSWEVGLG GQTQ+A++FG DCS+ HCP+GDDP+T +DETDC NKTA GG GVG+ GN CHVDCSNRG+CD++TGVCSCF+GYHG A   +
Sbjct:  425 ERYACPEDCSGNGACRNMREMGMMRTAEPLVNSSTEASSSSRGDSADGFEVVYGWDSPEGTATWESRSVFGCVCDSSWEVGLGRGQTQQAQYFGPDCSMLHCPTGDDPDTLIDETDCENKTADGGRGVGSAGNLCHVDCSNRGICDYTTGVCSCFDGYHGQASQQR 590          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A7S2AMA5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMA5_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.470e-55
Identity = 88/162 (54.32%), Postives = 107/162 (66.05%), Query Frame = 1
Query:    4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMK 489
            R +CPN CS  G C +M E+     A PL   + T             YG+ +P  A++WD+ S+  CVCDS W VGLG GQTQ  E+FG DCSLQHC SGDDPET +DET C NKTA GG GVG  GN+CHVDCSNRG+CD+STG C+CF+G++G  C  K
Sbjct:  161 RRSCPNDCSGHGQCLSMAELVNAAAAHPLTAADTT-------------YGFSAPVSAQSWDAESLQACVCDSRWTVGLGPGQTQTGEWFGPDCSLQHCSSGDDPETKVDETACFNKTAPGGRGVGEAGNRCHVDCSNRGICDYSTGECACFQGWYGSNCGAK 309          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 9.390e-55
Identity = 87/167 (52.10%), Postives = 104/167 (62.28%), Query Frame = 1
Query:    1 DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGY--GVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHV 495
            +R  CP+ CSD G C NM+ + +   ALPL N    SG                     TWD   +FGCVCDS WEVGLG+GQTQE E+FG DCSL+HCPSGDDP T++DETDC N T+S  Y    G  GN CHVDCSNRG CD++TG+C CF GY+G  C  + V
Sbjct:  116 ERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSGEDDT----------------VTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSV 266          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A5D6XZL0_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.370e-54
Identity = 82/159 (51.57%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMAC 480
            RYACPNGCS  G C +M+ M  +  A PL      +G+                    TWD + +FGCVCDSSW+VGL +GQ Q +++FGADCSL  CPSGDDP T +DETDC  K A GG G G  GNKCH+DCSNRG CD++TG C+CF G++G  C
Sbjct:  116 RYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEAT----------------TTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGKLAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNC 258          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A2D4CFV3_PYTIN (EGF-like domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFV3_PYTIN)

HSP 1 Score: 180 bits (456), Expect = 2.070e-53
Identity = 87/156 (55.77%), Postives = 102/156 (65.38%), Query Frame = 1
Query:   13 CPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMAC 480
            C N CS  G C +MR+M  M  ALPL +                +YG       KTWD   +FGCVCDS+W VGLG+GQ Q AE+FG DCSL  CPSGDDP T +DETDC+ K ASGG GVG  GNKCHVDCSNRG CD+STG+C CF+G++G  C
Sbjct:  134 CLNDCSGHGKCVSMRDMAAMTNALPLSD--------------ATIYG--GLESTKTWDQDRMFGCVCDSTWAVGLGTGQRQLAEWFGPDCSLMRCPSGDDPLTAVDETDCSGKQASGGIGVGQTGNKCHVDCSNRGKCDYSTGLCQCFDGFYGANC 273          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: K3WVA2_GLOUD (EGF-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVA2_GLOUD)

HSP 1 Score: 178 bits (451), Expect = 1.280e-52
Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMAC 480
            RY CPNGCS  G C +M+ +    +A PL      SG+                    TWD + +FGC+CDSSW VGL +GQ Q +E+FGADCSL  CPSGDDP T +DETDC+ K A+G  G GA GNKCHVDC+NRG CD +TG C+CF+G++G  C
Sbjct:  133 RYVCPNGCSGHGQCLSMKALAPTTSAFPLSAATTYSGAEAT----------------STWDQNRIFGCLCDSSWSVGLAAGQRQLSEWFGADCSLMRCPSGDDPMTAVDETDCSGKVAAGDVGTGATGNKCHVDCANRGKCDFTTGTCTCFDGFYGSNC 275          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A8K1C6E0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6E0_PYTOL)

HSP 1 Score: 186 bits (471), Expect = 1.180e-51
Identity = 86/166 (51.81%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHVD 498
            +R  CPN C  RG C +M+EM  ++TA PL      +G++                   TWD + VFGCVCDSSW VG G+G+ Q +E+FG DCSL+ CPSGDDPET +DETDCN KTA GG GVG  GN C+V+CSNRG+C++  G+C+CF GY G AC  K VD
Sbjct:  643 ERMTCPNDCYGRGKCVSMKEMATIKTAFPLSPPITYTGATST----------------TTWDENRVFGCVCDSSWAVGTGAGEIQASEYFGPDCSLRRCPSGDDPETLVDETDCNGKTAPGGIGVGDPGNLCYVECSNRGICNYRKGICTCFTGYSGNACQTKKVD 792          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A7S2WUH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.710e-51
Identity = 94/179 (52.51%), Postives = 107/179 (59.78%), Query Frame = 1
Query:    4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPET-NLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDM-----KHVDGYGFNTDG 522
            R  CPN CS  G C  M E+     ALPL      SGS+G+      MYG       K WD    F CVCDSSWEVGLGSGQ Q  E+FG DCSL+ CP GDDP T  +DETDC+NK+A G  G G  GN CHVDCS RG+C+H TG C+CFEGY+G  C +     K  DG G   DG
Sbjct:  279 RRRCPNDCSGHGRCLAMEELAATPEALPL------SGSNGS------MYGSLDRRATKAWDFDKAFACVCDSSWEVGLGSGQVQGPEYFGPDCSLRRCPGGDDPRTPGVDETDCSNKSADGFRGRGQPGNLCHVDCSQRGICNHGTGTCACFEGYYGHNCGLVSAMAKQQDGDGDGGDG 445          
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: D7FTJ2_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ2_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 3.130e-51
Identity = 80/162 (49.38%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   10 ACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHV 495
            +CP+ CS  G C +M E+G    ALPL+N +   G  G+                  WD  S++ CVCDS+WEVGLG GQ Q+AE+FGADCS + CP+GDDP T  D+TDC   TA GG+G+G  GN CHVDCS RG CDH+TG CSCF+G+ G  C    +
Sbjct:   33 SCPSDCSGHGVCLSMFELGQTAEALPLMNGSHIYGDVGSDE-------------TVAWDFESMYACVCDSAWEVGLGPGQRQQAEYFGADCSQRRCPTGDDPLTAEDDTDCEGITAEGGFGLGQAGNICHVDCSGRGQCDHTTGECSCFDGFFGENCGKTTI 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP52_9PHAE9.270e-8568.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCI8_ECTSI1.050e-7768.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AMA5_9STRA1.470e-5554.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7FYV5_ECTSI9.390e-5552.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6XZL0_9STRA2.370e-5451.57EGF-like domain-containing protein n=1 Tax=Pythium... [more]
A0A2D4CFV3_PYTIN2.070e-5355.77EGF-like domain-containing protein n=2 Tax=Pythium... [more]
K3WVA2_GLOUD1.280e-5250.94EGF-like domain-containing protein n=1 Tax=Globisp... [more]
A0A8K1C6E0_PYTOL1.180e-5151.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2WUH0_9STRA2.710e-5152.51Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FTJ2_ECTSI3.130e-5149.38EGF-like domain-containing protein n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9794contigH-elongata_contig9794:417..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue4.4e-65
Seed eggNOG ortholog2880.D8LCI8
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_001570.1
Exons5
Model size528
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9794.17143.1prot_H-elongata_contig9794.17143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9794 417..3144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931370.3410492-CDS-H-elongata_contig9794:416..6441622931370.3410492-CDS-H-elongata_contig9794:416..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 417..644 +
1691679808.527894-CDS-H-elongata_contig9794:416..6441691679808.527894-CDS-H-elongata_contig9794:416..644Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 417..644 +
1622931370.359596-CDS-H-elongata_contig9794:963..10511622931370.359596-CDS-H-elongata_contig9794:963..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 964..1051 +
1691679808.5477214-CDS-H-elongata_contig9794:963..10511691679808.5477214-CDS-H-elongata_contig9794:963..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 964..1051 +
1622931370.374319-CDS-H-elongata_contig9794:1533..16091622931370.374319-CDS-H-elongata_contig9794:1533..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 1534..1609 +
1691679808.5597706-CDS-H-elongata_contig9794:1533..16091691679808.5597706-CDS-H-elongata_contig9794:1533..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 1534..1609 +
1622931370.3877816-CDS-H-elongata_contig9794:2439..25211622931370.3877816-CDS-H-elongata_contig9794:2439..2521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 2440..2521 +
1691679808.5704849-CDS-H-elongata_contig9794:2439..25211691679808.5704849-CDS-H-elongata_contig9794:2439..2521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 2440..2521 +
1622931370.4037838-CDS-H-elongata_contig9794:3090..31441622931370.4037838-CDS-H-elongata_contig9794:3090..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 3091..3144 +
1691679808.583963-CDS-H-elongata_contig9794:3090..31441691679808.583963-CDS-H-elongata_contig9794:3090..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9794 3091..3144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9794.17143.1

>prot_H-elongata_contig9794.17143.1 ID=prot_H-elongata_contig9794.17143.1|Name=mRNA_H-elongata_contig9794.17143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMY
GWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCP
SGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCS
CFEGYHGMACDMKHVDGYGFNTDGK*
back to top

mRNA from alignment at H-elongata_contig9794:417..3144+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9794.17143.1 ID=mRNA_H-elongata_contig9794.17143.1|Name=mRNA_H-elongata_contig9794.17143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2728bp|location=Sequence derived from alignment at H-elongata_contig9794:417..3144+ (Himanthalia elongata Himel1 dioecious)
GACAGGTATGCATGCCCCAACGGCTGCTCGGACCGCGGCGCTTGCCGAAA CATGCGCGAGATGGGCATGATGGAGACGGCATTGCCCCTTGTCAACGACA ACGATACCTCAGGCTCTTCCGGGGCTGGAGGGGGCTTCATTGTGATGTAT GGGTGGGGTTCGCCTGCGGGAGCAAAAACCTGGGATTCCCATTCGGTGTT CGGGTGCGTCTGCGATTCTTCCTGGGAGGTGAGGCGTGAGACGTAAATTC CGGAGAAGCGGGTCACCGTTGAGCTTGATACGTACCAGGTATTCAACATC GAGTCATCCACTTCGGCTTATGATTTATTTCTCTCTTTCAAAATCATTTT GGATGTAAAAATGGACGAAAAGGGCGGACGATGGCTTAGGGATACTACTA CAGTATGCGATTTCGATGGACCTTTTTTTTCTGTTCCTAAAATGTGCGCT CGTTATCAAGATGAATTAAACAATACAGAGAATGTTAAGTTGTTGACAAG ATCAACAGTTGCTGGGCAACGCTTTCGCGTACCATGCTCCCTGATAGGTT GGTTTGGGTAGCGGCCAAACACAGGAGGCGGAGTTCTTTGGAGCCGACTG CTCCCTCCAACACTGTCCTTCAGGCGATGATCCAGGTAAGAAACATAAAT GTTTAGCACGGATAGAATGCCTCCTATCCCACGGAAAAATCCCCGCCATA CGTTTTTCTTCGTTTTTGGATTCAGGGGCGTCCGATTGATTTTTGCACCC ACTCGCAGTTTTAGCAAAATCTTTCCAATGTCCAAGATCTTCCCAGAGTT GAAAAATAAAGGCCAGAAACCAAGAGAACAATGTGGAGGGGACGGTTTTC ATCCAGTATTGGAATACAACCTTGATTTTTGTATCTCTGAAGCTTTTCCT AGACATCGCAGCAGCAATCTGCGTACCCCGCGCAATTCTTCATTGCGGCA GTACTGTATTCGCTCGCAGAAATTACATACGCGAGAACACGAGTAGGGTC TATGTTTCATACTTTGGCGTGATCTATAACGTTAGTATTTAAGCAAAGAG AGACACCAAGGATACATCAATCGAGTGATTTCGGTTAACGCCCACAGTAG TAACATGGATTTGACAGAGACTAACTTGGACGAGACTGACTGCAACAATA AAACAGCGTCGGGTGGATATGGCGTGGGGGCCAAGGGTAACAAGTGAGTG GGGTAGTGCGCTTCGCAATGTGCTGAGTTTACCGCGCTCGCTCATTCTTT TCTCGGGCATTTTCCTGTGTTTCGTTTTTTGTTAAACCCGTGACAACGCT GTGGATAGCCTCGGACTTCTATCATCGCGCGCCACCACCAGCGTCATTAT TACTTTCTCACAGTTGTCGTTGATTTCCATTAGGCACACAACATCCTCTC GACACAGTGGTAATTATATAGTGTCTTGTAACCGGGTGATCTCGTTGTCA GTCTTCACCACGTTTCGTCGAGCCAGGAATTATTAGAAGATGCTGATATA CTTGCTTCATTCACTATAGTTCTCGACAATAGAGCGAGCATGTATTGATA TAGACATATAGATAAATATAGATATAGATATAGATAATATTAGGCAGGTA ACGTTGTTGGATATATATAGATATAGAAAATATTAGGCGGGTAACGTTGT TGGTGACTGTATAGTGTATAATAGTACCTCCTTATTAATGAGATGGGTGA CTCCGGTCGGACTTTTCCGCGGCAACCGGGAAATAGAGCCGTCAAGACTC GTGTGGCTACTGACCTAGCTATTGATAAATTAGGGGTGGGGACGACTTCC GTCCGCGGAGTGTGTTATGTGATGTATAGTATACCTTGTGACCTACGGTA TGGGCGCAAACGTTCGGCTCAGATTAATATCTAAGTGAATCTTCATCAGT CGTCGTCCATCCCTTCTTGCCGTTTAACTTCTAAGAGCCTCATTGGCAAG ATATGAATGATGAGTTACATCGCAGTAGAGTACAACCTCGATTTGTTATG AACTCATCCTGCCGACCCTGCAGGTGTCATGTCGACTGCTCCAACCGTGG GCTTTGCGATCACTCGACGGGGGTCTGTAGTTGCTTCGAAGGCTATCATG GCATGGTGAATACCGATAATAACCTGCGGATAATTACCCCAGGCGCTTGT CGTACGGGTTGCATACCATATCTCTGCGGAGCGCTCAATAGCCTGTATTT ATTATACGTCTTAGCTCATCTTATGGGGAGTAGAGGTGGGACCACCTTCG TGTTAAGTCTTCGCTCGTTCGTAATGACAATTATACTTCCTTGAAATCAC TCAGAGACCTCAGTCTTTTTGCCATAGCATAGTAAAGCGCGGTTCAATGT CGGTCGGCAACTTTCTCAGGGAACTCCTATGGTTCTTTGACAAGACCAAG GCATGATTCTTTAACATGGTGCTTAGGCCTCCACGTAGACACGAACTGAC TACGATATTTTTCTGCCGCCGGACCTTGATAATTTCTGAAGCAGTAGTCG TCTACTCGAGGGCGATTGCTATACACGCACAATATTTAGCTTGGGGGGGA GCAGTTACAGTAAGTGTAATGATGAATTGCTGGCTCTTTGTCGGACAGCA TCGGAATAAAAACGCTTCTTCTTTCGCATTCCTTCGGGGAAAATATCCCC CCCCCTGTTAATTTTCCTTGGCAGGCGTGTGATATGAAGCACGTGGACGG CTACGGCTTCAACACGGACGGGAAATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig9794:417..3144+

>mRNA_H-elongata_contig9794.17143.1 ID=mRNA_H-elongata_contig9794.17143.1|Name=mRNA_H-elongata_contig9794.17143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig9794:417..3144+ (Himanthalia elongata Himel1 dioecious)
GACAGGTATGCATGCCCCAACGGCTGCTCGGACCGCGGCGCTTGCCGAAA
CATGCGCGAGATGGGCATGATGGAGACGGCATTGCCCCTTGTCAACGACA
ACGATACCTCAGGCTCTTCCGGGGCTGGAGGGGGCTTCATTGTGATGTAT
GGGTGGGGTTCGCCTGCGGGAGCAAAAACCTGGGATTCCCATTCGGTGTT
CGGGTGCGTCTGCGATTCTTCCTGGGAGGACAGGTATGCATGCCCCAACG
GCTGCTCGGACCGCGGCGCTTGCCGAAACATGCGCGAGATGGGCATGATG
GAGACGGCATTGCCCCTTGTCAACGACAACGATACCTCAGGCTCTTCCGG
GGCTGGAGGGGGCTTCATTGTGATGTATGGGTGGGGTTCGCCTGCGGGAG
CAAAAACCTGGGATTCCCATTCGGTGTTCGGGTGCGTCTGCGATTCTTCC
TGGGAGGTTGGTTTGGGTAGCGGCCAAACACAGGAGGCGGAGTTCTTTGG
AGCCGACTGCTCCCTCCAACACTGTCCTTCAGGCGATGATCCAGGTTGGT
TTGGGTAGCGGCCAAACACAGGAGGCGGAGTTCTTTGGAGCCGACTGCTC
CCTCCAACACTGTCCTTCAGGCGATGATCCAGAGACTAACTTGGACGAGA
CTGACTGCAACAATAAAACAGCGTCGGGTGGATATGGCGTGGGGGCCAAG
GGTAACAAAGACTAACTTGGACGAGACTGACTGCAACAATAAAACAGCGT
CGGGTGGATATGGCGTGGGGGCCAAGGGTAACAAGTGTCATGTCGACTGC
TCCAACCGTGGGCTTTGCGATCACTCGACGGGGGTCTGTAGTTGCTTCGA
AGGCTATCATGGCATGGTGTCATGTCGACTGCTCCAACCGTGGGCTTTGC
GATCACTCGACGGGGGTCTGTAGTTGCTTCGAAGGCTATCATGGCATGGC
GTGTGATATGAAGCACGTGGACGGCTACGGCTTCAACACGGACGGGAAAT
AGGCGTGTGATATGAAGCACGTGGACGGCTACGGCTTCAACACGGACGGG
AAATAG
back to top