mRNA_H-elongata_contig9794.17143.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A6H5KP52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP52_9PHAE) HSP 1 Score: 269 bits (688), Expect = 9.270e-85 Identity = 121/176 (68.75%), Postives = 140/176 (79.55%), Query Frame = 1
Query: 4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGG---GFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHVDGYGFNTDG 522
+YACP CS GACRNMREMGMM TA PLVN + + SS G GF V+YGW SP G TW+S S+FGCVCDSSWEVGLG GQTQ+A++FG DCS+ HCP+GDDP+T +DETDC NKTA GG GVG+ GN CHVDCSNRG+CD++TGVCSCF+GYHG AC+ K DGYGFNT G
Sbjct: 409 KYACPEDCSGNGACRNMREMGMMRTAEPLVNSSTEASSSSRGDSADGFEVVYGWDSPEGTATWESRSMFGCVCDSSWEVGLGRGQTQQAQYFGPDCSMLHCPTGDDPDTLIDETDCENKTADGGRGVGSAGNLCHVDCSNRGICDYTTGVCSCFDGYHGQACNSKQSDGYGFNTVG 584
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: D8LCI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI8_ECTSI) HSP 1 Score: 251 bits (641), Expect = 1.050e-77 Identity = 113/166 (68.07%), Postives = 131/166 (78.92%), Query Frame = 1
Query: 1 DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGG---GFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMK 489
+RYACP CS GACRNMREMGMM TA PLVN + + SS G GF V+YGW SP G TW+S SVFGCVCDSSWEVGLG GQTQ+A++FG DCS+ HCP+GDDP+T +DETDC NKTA GG GVG+ GN CHVDCSNRG+CD++TGVCSCF+GYHG A +
Sbjct: 425 ERYACPEDCSGNGACRNMREMGMMRTAEPLVNSSTEASSSSRGDSADGFEVVYGWDSPEGTATWESRSVFGCVCDSSWEVGLGRGQTQQAQYFGPDCSMLHCPTGDDPDTLIDETDCENKTADGGRGVGSAGNLCHVDCSNRGICDYTTGVCSCFDGYHGQASQQR 590
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A7S2AMA5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMA5_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.470e-55 Identity = 88/162 (54.32%), Postives = 107/162 (66.05%), Query Frame = 1
Query: 4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMK 489
R +CPN CS G C +M E+ A PL + T YG+ +P A++WD+ S+ CVCDS W VGLG GQTQ E+FG DCSLQHC SGDDPET +DET C NKTA GG GVG GN+CHVDCSNRG+CD+STG C+CF+G++G C K
Sbjct: 161 RRSCPNDCSGHGQCLSMAELVNAAAAHPLTAADTT-------------YGFSAPVSAQSWDAESLQACVCDSRWTVGLGPGQTQTGEWFGPDCSLQHCSSGDDPETKVDETACFNKTAPGGRGVGEAGNRCHVDCSNRGICDYSTGECACFQGWYGSNCGAK 309
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: D7FYV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV5_ECTSI) HSP 1 Score: 183 bits (464), Expect = 9.390e-55 Identity = 87/167 (52.10%), Postives = 104/167 (62.28%), Query Frame = 1
Query: 1 DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGY--GVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHV 495
+R CP+ CSD G C NM+ + + ALPL N SG TWD +FGCVCDS WEVGLG+GQTQE E+FG DCSL+HCPSGDDP T++DETDC N T+S Y G GN CHVDCSNRG CD++TG+C CF GY+G C + V
Sbjct: 116 ERSGCPDDCSDHGRCVNMKALAVTSDALPLSNVTTYSGEDDT----------------VTWDEEMIFGCVCDSKWEVGLGAGQTQEPEWFGPDCSLRHCPSGDDPSTDVDETDCFNVTSSSVYLGTAGRAGNLCHVDCSNRGTCDYATGLCECFTGYYGFNCGQQSV 266
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A5D6XZL0_9STRA (EGF-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZL0_9STRA) HSP 1 Score: 182 bits (461), Expect = 2.370e-54 Identity = 82/159 (51.57%), Postives = 101/159 (63.52%), Query Frame = 1
Query: 4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMAC 480
RYACPNGCS G C +M+ M + A PL +G+ TWD + +FGCVCDSSW+VGL +GQ Q +++FGADCSL CPSGDDP T +DETDC K A GG G G GNKCH+DCSNRG CD++TG C+CF G++G C
Sbjct: 116 RYACPNGCSGHGQCVSMQAMAELTNAAPLSAATTYAGAEAT----------------TTWDQNRIFGCVCDSSWDVGLAAGQRQSSQWFGADCSLMRCPSGDDPMTTVDETDCGGKLAPGGVGTGETGNKCHIDCSNRGKCDYTTGTCACFSGFYGSNC 258
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A2D4CFV3_PYTIN (EGF-like domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFV3_PYTIN) HSP 1 Score: 180 bits (456), Expect = 2.070e-53 Identity = 87/156 (55.77%), Postives = 102/156 (65.38%), Query Frame = 1
Query: 13 CPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMAC 480
C N CS G C +MR+M M ALPL + +YG KTWD +FGCVCDS+W VGLG+GQ Q AE+FG DCSL CPSGDDP T +DETDC+ K ASGG GVG GNKCHVDCSNRG CD+STG+C CF+G++G C
Sbjct: 134 CLNDCSGHGKCVSMRDMAAMTNALPLSD--------------ATIYG--GLESTKTWDQDRMFGCVCDSTWAVGLGTGQRQLAEWFGPDCSLMRCPSGDDPLTAVDETDCSGKQASGGIGVGQTGNKCHVDCSNRGKCDYSTGLCQCFDGFYGANC 273
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: K3WVA2_GLOUD (EGF-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVA2_GLOUD) HSP 1 Score: 178 bits (451), Expect = 1.280e-52 Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 1
Query: 4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMAC 480
RY CPNGCS G C +M+ + +A PL SG+ TWD + +FGC+CDSSW VGL +GQ Q +E+FGADCSL CPSGDDP T +DETDC+ K A+G G GA GNKCHVDC+NRG CD +TG C+CF+G++G C
Sbjct: 133 RYVCPNGCSGHGQCLSMKALAPTTSAFPLSAATTYSGAEAT----------------STWDQNRIFGCLCDSSWSVGLAAGQRQLSEWFGADCSLMRCPSGDDPMTAVDETDCSGKVAAGDVGTGATGNKCHVDCANRGKCDFTTGTCTCFDGFYGSNC 275
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A8K1C6E0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6E0_PYTOL) HSP 1 Score: 186 bits (471), Expect = 1.180e-51 Identity = 86/166 (51.81%), Postives = 108/166 (65.06%), Query Frame = 1
Query: 1 DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHVD 498
+R CPN C RG C +M+EM ++TA PL +G++ TWD + VFGCVCDSSW VG G+G+ Q +E+FG DCSL+ CPSGDDPET +DETDCN KTA GG GVG GN C+V+CSNRG+C++ G+C+CF GY G AC K VD
Sbjct: 643 ERMTCPNDCYGRGKCVSMKEMATIKTAFPLSPPITYTGATST----------------TTWDENRVFGCVCDSSWAVGTGAGEIQASEYFGPDCSLRRCPSGDDPETLVDETDCNGKTAPGGIGVGDPGNLCYVECSNRGICNYRKGICTCFTGYSGNACQTKKVD 792
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: A0A7S2WUH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUH0_9STRA) HSP 1 Score: 179 bits (454), Expect = 2.710e-51 Identity = 94/179 (52.51%), Postives = 107/179 (59.78%), Query Frame = 1
Query: 4 RYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPET-NLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDM-----KHVDGYGFNTDG 522
R CPN CS G C M E+ ALPL SGS+G+ MYG K WD F CVCDSSWEVGLGSGQ Q E+FG DCSL+ CP GDDP T +DETDC+NK+A G G G GN CHVDCS RG+C+H TG C+CFEGY+G C + K DG G DG
Sbjct: 279 RRRCPNDCSGHGRCLAMEELAATPEALPL------SGSNGS------MYGSLDRRATKAWDFDKAFACVCDSSWEVGLGSGQVQGPEYFGPDCSLRRCPGGDDPRTPGVDETDCSNKSADGFRGRGQPGNLCHVDCSQRGICNHGTGTCACFEGYYGHNCGLVSAMAKQQDGDGDGGDG 445
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Match: D7FTJ2_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ2_ECTSI) HSP 1 Score: 171 bits (434), Expect = 3.130e-51 Identity = 80/162 (49.38%), Postives = 101/162 (62.35%), Query Frame = 1
Query: 10 ACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYGWGSPAGAKTWDSHSVFGCVCDSSWEVGLGSGQTQEAEFFGADCSLQHCPSGDDPETNLDETDCNNKTASGGYGVGAKGNKCHVDCSNRGLCDHSTGVCSCFEGYHGMACDMKHV 495
+CP+ CS G C +M E+G ALPL+N + G G+ WD S++ CVCDS+WEVGLG GQ Q+AE+FGADCS + CP+GDDP T D+TDC TA GG+G+G GN CHVDCS RG CDH+TG CSCF+G+ G C +
Sbjct: 33 SCPSDCSGHGVCLSMFELGQTAEALPLMNGSHIYGDVGSDE-------------TVAWDFESMYACVCDSAWEVGLGPGQRQQAEYFGADCSQRRCPTGDDPLTAEDDTDCEGITAEGGFGLGQAGNICHVDCSGRGQCDHTTGECSCFDGFFGENCGKTTI 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9794.17143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9794.17143.1 >prot_H-elongata_contig9794.17143.1 ID=prot_H-elongata_contig9794.17143.1|Name=mRNA_H-elongata_contig9794.17143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp DRYACPNGCSDRGACRNMREMGMMETALPLVNDNDTSGSSGAGGGFIVMYback to top mRNA from alignment at H-elongata_contig9794:417..3144+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9794.17143.1 ID=mRNA_H-elongata_contig9794.17143.1|Name=mRNA_H-elongata_contig9794.17143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2728bp|location=Sequence derived from alignment at H-elongata_contig9794:417..3144+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9794:417..3144+ >mRNA_H-elongata_contig9794.17143.1 ID=mRNA_H-elongata_contig9794.17143.1|Name=mRNA_H-elongata_contig9794.17143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig9794:417..3144+ (Himanthalia elongata Himel1 dioecious)back to top |