mRNA_H-elongata_contig97867.17130.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97867.17130.1
Unique NamemRNA_H-elongata_contig97867.17130.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: D7FJB1_ECTSI (Fucokinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.120e-25
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    1 PFDCIAITAPNPRASKAYLRELVRRVGGNGT---KEILILAVSDPEGVRIGSGGGTLNAILEV 180
            PFDC+AITAPNPRA+KAYL ELV RVG NGT   KE+LILAVSDPEGVRIGSGGGTLNA+LE+
Sbjct:   35 PFDCLAITAPNPRAAKAYLDELVHRVGVNGTEGTKEVLILAVSDPEGVRIGSGGGTLNAVLEI 97          
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: A0A6H5LE27_9PHAE (FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE27_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 8.690e-24
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    4 FDCIAITAPNPRASKAYLRELVRRVGGNGT---KEILILAVSDPEGVRIGSGGGTLNAILEV 180
            FDC+AITAPNPRASKAYL ELV RVG +GT   KE+LILAVSDPEGVRIGSGGGTLNA+LE+
Sbjct:   36 FDCLAITAPNPRASKAYLDELVHRVGMSGTEGTKEVLILAVSDPEGVRIGSGGGTLNAVLEI 97          
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: A0A7S2WFB1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFB1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.610e-10
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 PFDCIAITAPNPR---ASKAYL-RELVRRVGGNGTKEILILAVSDPEGVRIGSGGGTLNAI 171
            PFDC+ +T PN R   A++A L R   R V   G    ++LAV+DPEG R+GSGGGTLNA+
Sbjct:   16 PFDCVVVTCPNRRSADATRAVLPRVFDRAVDAGGGPRPVLLAVADPEGRRVGSGGGTLNAM 76          
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: A0A482RU81_9ARCH (Fucokinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU81_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 1.800e-7
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    4 FDCIAITAPNPRASKAYLRELVR-RVGGNGTKEILILAVSDPEGVRIGSGGGTLNAI 171
            F  I ITAPN R++  Y REL + R G +        AVSDPEG R+GSGGGTL+ +
Sbjct:    4 FSHIVITAPNERSATLYERELQKLRRGAHELSACQFFAVSDPEGQRLGSGGGTLHVL 60          
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: A0A6V7XEX4_9BILA (Hypothetical protein n=4 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7XEX4_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 9.110e-6
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    4 FDCIAITAPNPRASKAYLREL--VRRVGGNGTKEILILAVSDPEGVRIGSGGGTLNAIL 174
            +DC+ +TA N +    +L++L  +R    N  KE ++LA   PEGVRIGSGG TLNA+L
Sbjct:   26 WDCLLLTARNEKQRNIFLQQLQHLRLKERNFCKEYVVLA-DKPEGVRIGSGGATLNALL 83          
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: UPI000D1CD0F0 (bifunctional fucokinase/fucose pyrophosphorylase-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CD0F0)

HSP 1 Score: 50.8 bits (120), Expect = 9.240e-6
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    4 FDCIAITAPNPRASKAYLRELVRRVG-GNGTKEILILAVSDPEGVRIGSGGGTLNAILEV 180
            +D I ITA  P  ++ Y   L R V  G   K  L+LAV DP G RIGSGG TL AI E+
Sbjct:   27 WDAILITAAGPDQARLYQLHLQRAVDRGRIAKHTLVLAVPDPLGRRIGSGGATLGAIREL 86          
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Match: A0A7S0NP40_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NP40_9EUKA)

HSP 1 Score: 48.1 bits (113), Expect = 1.340e-5
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   13 IAITAPNPRASKAYLRELVRR--VGGNGTKEILILAVSDPEGVRIGSGGGTLNAILEV 180
            I  TA N   + AY +E+  R  +G    +  LIL+V+DP G RIGSGGGTLNA++ V
Sbjct:   21 IVCTAANEAQADAYRKEMDARRALGSLPPRCSLILSVADPCGARIGSGGGTLNALVAV 78          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97867.17130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FJB1_ECTSI7.120e-2582.54Fucokinase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LE27_9PHAE8.690e-2482.26FK protein ( GFPPprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A7S2WFB1_9STRA3.610e-1052.46Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482RU81_9ARCH1.800e-750.88Fucokinase domain-containing protein (Fragment) n=... [more]
A0A6V7XEX4_9BILA9.110e-647.46Hypothetical protein n=4 Tax=Meloidogyne enterolob... [more]
UPI000D1CD0F09.240e-650.00bifunctional fucokinase/fucose pyrophosphorylase-l... [more]
A0A7S0NP40_9EUKA1.340e-548.28Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97867contigH-elongata_contig97867:1321..1506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.2e-21
Seed eggNOG ortholog2880.D7FJB1
KEGG rclassRC00002,RC00078
KEGG koko:K00976,ko:K05305
KEGG ReactionR01951,R03161
KEGG Pathwayko00051,ko00520,ko01100,map00051,map00520,map01100
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009165,GO:0009225,GO:0009226,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0042350,GO:0042352,GO:0043094,GO:0043173,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046368,GO:0046483,GO:0047341,GO:0050201,GO:0055086,GO:0070568,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.GDP-L-fucose salvage
EggNOG OGsCOG2605@1,KOG4644@2759
EC2.7.1.52,2.7.7.30
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931369.1237135-CDS-H-elongata_contig97867:1320..15061622931369.1237135-CDS-H-elongata_contig97867:1320..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97867 1321..1506 +
1691679808.112266-CDS-H-elongata_contig97867:1320..15061691679808.112266-CDS-H-elongata_contig97867:1320..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97867 1321..1506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97867.17130.1prot_H-elongata_contig97867.17130.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97867 1321..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97867.17130.1

>prot_H-elongata_contig97867.17130.1 ID=prot_H-elongata_contig97867.17130.1|Name=mRNA_H-elongata_contig97867.17130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
PFDCIAITAPNPRASKAYLRELVRRVGGNGTKEILILAVSDPEGVRIGSG
GGTLNAILEVT*
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mRNA from alignment at H-elongata_contig97867:1321..1506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97867.17130.1 ID=mRNA_H-elongata_contig97867.17130.1|Name=mRNA_H-elongata_contig97867.17130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig97867:1321..1506+ (Himanthalia elongata Himel1 dioecious)
CCCTTCGATTGCATCGCCATCACTGCGCCGAACCCCAGAGCGTCGAAGGC CTACCTCAGGGAGCTCGTACGCAGGGTGGGTGGAAATGGAACCAAGGAGA TTCTAATATTGGCTGTTTCCGATCCGGAAGGAGTGCGAATTGGGTCTGGA GGAGGAACGCTCAACGCCATTCTCGAGGTAACCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig97867:1321..1506+

>mRNA_H-elongata_contig97867.17130.1 ID=mRNA_H-elongata_contig97867.17130.1|Name=mRNA_H-elongata_contig97867.17130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig97867:1321..1506+ (Himanthalia elongata Himel1 dioecious)
CCCTTCGATTGCATCGCCATCACTGCGCCGAACCCCAGAGCGTCGAAGGC
CTACCTCAGGGAGCTCGTACGCAGGGTGGGTGGAAATGGAACCAAGGAGA
TTCTAATATTGGCTGTTTCCGATCCGGAAGGAGTGCGAATTGGGTCTGGA
GGAGGAACGCTCAACGCCATTCTCGAGGTAACCTAGCCCTTCGATTGCAT
CGCCATCACTGCGCCGAACCCCAGAGCGTCGAAGGCCTACCTCAGGGAGC
TCGTACGCAGGGTGGGTGGAAATGGAACCAAGGAGATTCTAATATTGGCT
GTTTCCGATCCGGAAGGAGTGCGAATTGGGTCTGGAGGAGGAACGCTCAA
CGCCATTCTCGAGGTAACCTAG
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