mRNA_H-elongata_contig97809.17121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97809.17121.1
Unique NamemRNA_H-elongata_contig97809.17121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: D7G2Q6_ECTSI (V-type proton ATPase subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q6_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.300e-98
Identity = 147/188 (78.19%), Postives = 175/188 (93.09%), Query Frame = 1
Query:    1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            ++VAGV+ GQYVR+FEWDYSK+AVRQRLPALVALIQG VGKIEEEHRN+S+VF EKNQA+QALKRKKGNNL+TVELS+V+S+E+LRG+ MVD+E+L+TLAVA+ K QE +WL  YE IGS+IAS+G+PDWSNPSVA+SLGT DGQFGP FS+RGVVKGSPVVP S+QK+LE+GEQVLYTVT+LRGQYQ
Sbjct:   88 LKVAGVSPGQYVRMFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFAEKNQAMQALKRKKGNNLATVELSEVLSSEQLRGVMMVDTENLVTLAVAMGKPQEKDWLEGYESIGSEIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSTQKVLEEGEQVLYTVTVLRGQYQ 275          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A835Z1N8_9STRA (V-type proton ATPase subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N8_9STRA)

HSP 1 Score: 212 bits (540), Expect = 5.940e-64
Identity = 106/188 (56.38%), Postives = 141/188 (75.00%), Query Frame = 1
Query:    1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            ++V  +   +YVR  EWD++KYAVRQ LPALV  IQ  +GKIEEE R+++  + EK QA QALKRKK  NL T +LS+V++ +KLR IT+V+++HL TL VA+ K QE+ WL TY +IG+DIA+MG+PDWS P+    LG+ +GQ GP FS R   KGSPV+P S+ KI+EDG+  LYTVT+L+GQYQ
Sbjct:   97 LRVGALAPDRYVRQLEWDFAKYAVRQPLPALVGTIQSTMGKIEEELRSLTGTYTEKTQAAQALKRKKQANLMTADLSEVLTEDKLRHITLVETDHLTTLIVAVNKNQESAWLDTYHQIGADIAAMGSPDWSAPANRAQLGSINGQHGPEFSQRTATKGSPVIPGSTVKIMEDGDACLYTVTVLKGQYQ 284          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S2CU31_9STRA (V-type proton ATPase subunit C n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU31_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.500e-40
Identity = 81/190 (42.63%), Postives = 121/190 (63.68%), Query Frame = 1
Query:    1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRG--ITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            ++V  V   +++  F+WD +KY  R+ LP LV LI GGVG +EE+ +N+S+   EK Q L AL RKKG NL+   L +V++ + ++G  +  +D+++L T+ V I K  E EWL+ Y+ IG+DIA  G PDW++       G  DG FG    +R    GSPVVP S+ +++ +GE VLYTV +L+GQY+
Sbjct:  114 LKVGPVPPKRFLEEFQWDIAKYPNRRPLPELVQLILGGVGSVEEDLKNLSINLSEKTQQLSALNRKKGGNLAMAPLEEVLTPDVIQGSGVQFLDTDYLRTVVVVINKAAEPEWLNVYQGIGTDIAGYGGPDWTSGG---GCGQNDGNFGAEI-DRQRETGSPVVPGSATRVVAEGEHVLYTVVILKGQYE 299          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S4UXB0_9STRA (V-type proton ATPase subunit C n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UXB0_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.660e-39
Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 1
Query:    7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            V GV A +Y++ F WDY+KY  R+ L  LVALI GGV  I+EE + +S  F +K  AL   KRKKG NL   +L+DV++ + +R + + DSE+L TL VA+ K    ++ ST + +GS++   G PDWS  S         G        RG    SPVVP S +KI++D + VLYTVT+L+ QY+
Sbjct:   90 VGGVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQVALSEAKRKKGGNLLVADLNDVVTEQAMRSVEVHDSEYLKTLFVAVPKVDMEKFESTIQSLGSNLVGYGGPDWSTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSVKKIMDDKDSVLYTVTILKSQYE 271          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S4UMZ7_9STRA (V-type proton ATPase subunit C n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UMZ7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.380e-38
Identity = 78/188 (41.49%), Postives = 112/188 (59.57%), Query Frame = 1
Query:    1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            + +  V A +Y++ F WDY+KY  R+ L  LVALI GGV  I+EE + +S  F +K  AL   KRKKG NL   +L+DV++ + +R + + DSE+L TL VA+ K    ++ ST + +GS++   G PDWS  S         G        RG    SPVVP S +KI++D + VLYTVT+L+ QY+
Sbjct:   17 LSILPVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQVALSEAKRKKGGNLLVADLNDVVTEQAMRSVEVHDSEYLKTLFVAVPKVDMEKFESTIQSLGSNLVGYGGPDWSTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSVKKIMDDKDSVLYTVTILKSQYE 200          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A6U4AG43_9STRA (V-type proton ATPase subunit C n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U4AG43_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.080e-38
Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 1
Query:    7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            V GV A +Y++ F WDY+KY  R+ L  LVALI GGV  I+EE + +S  F +K  AL   KRKKG NL   +L+DV++ + +R + + DSE+L TL VA+ K    ++ ST + +GS++   G PDWS  S         G        RG    SPVVP S +KI++D + VLYTVT+L+ QY+
Sbjct:   90 VGGVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQVALSEAKRKKGGNLLVADLNDVVTEQAMRSVEVHDSEYLKTLFVAVPKVDMEKFESTIQSLGSNLVGYGGPDWSTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSVKKIMDDKDSVLYTVTILKSQYE 271          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A485LS38_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS38_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.520e-36
Identity = 79/186 (42.47%), Postives = 113/186 (60.75%), Query Frame = 1
Query:    7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            V GV   +Y+  F WD +K+  R+ L  ++++IQ  +GKIEEE + +S  + EK Q L   ++KKG NL    L+D+++ + ++    V+SE+L TL V + K+QE  WL+ Y  IG+DIA                     +FGP  S RG VKGSPVVP SS+K+LE+GE  LYTVT+L+GQYQ
Sbjct:   91 VDGVPVTRYLHHFSWDEAKHPHRRPLSEIISIIQSSIGKIEEELKQLSTRYTEKKQQLALHQKKKGGNLLVANLTDILTPDIVKTSDFVNSEYLQTLVVVVPKSQEEVWLNEYATIGADIA---------------------EFGPKQS-RGAVKGSPVVPNSSRKLLEEGEACLYTVTILKGQYQ 254          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: K0TGY8_THAOC (V-type proton ATPase subunit C (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGY8_THAOC)

HSP 1 Score: 141 bits (356), Expect = 6.680e-36
Identity = 80/187 (42.78%), Postives = 118/187 (63.10%), Query Frame = 1
Query:    7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWS-NPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            V GV +G+YV+ F WDY+K+  R+ L  LV+LI GGV  I+EE + +S  + EK  ALQ  KRK+G NL T +L+DV+  + +R +++ D+E+L TL VA+ +     + +    +GS++   G PDWS NP+    LG+ +  FG      G  KGSPVVP S +K+ ED E VL+ VT+L+G Y+
Sbjct:  301 VGGVPSGRYVQQFAWDYAKFPNRRPLKELVSLIAGGVSAIDEELKQLSNSYGEKQVALQDAKRKRGGNLMTADLNDVLDEKVMRNVSVKDTEYLRTLFVAVPRAAVENFTADVYTLGSELVGYGGPDWSGNPA---GLGSAE-NFGQGVDRHGK-KGSPVVPGSLEKVTEDSESVLFAVTVLKGMYE 482          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S2MLU4_9STRA (V-type proton ATPase subunit C n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLU4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.280e-35
Identity = 75/186 (40.32%), Postives = 110/186 (59.14%), Query Frame = 1
Query:    7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            V GV A +Y++ F WDY+KY  R+ L  LVALI GGV  I+EE + +S  F +K  AL   KRKKG N    +L+DVIS + +R + + ++E+L T+ +A+ K    ++ +T E IGS++   G PDW+  S         G        RG    SPVVP S +K+ ED + +L+TVT+L+ QY+
Sbjct:   90 VGGVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQLALSEAKRKKGGNFLVADLNDVISEQAMRDVRVFNTEYLKTIFIAVPKVDREKFENTIEGIGSNLVGYGGPDWTTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSLKKVQEDKDSILFTVTILKSQYE 271          
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: W4H5I3_9STRA (V-type proton ATPase subunit C n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5I3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.230e-35
Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 1
Query:    7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
            V GV   +Y+  F WD +K+  R+ L  +V++IQ  VGKIEEE + +S  + EK Q L   ++KKG NL    L+D+++ + ++    V++E+L TL V + K+QE  WL  Y  IG DIA                     +FGP  S RG VKGSPVVP SS+K+LE+G+  LYTVT+L+GQYQ
Sbjct:   91 VDGVPVERYLHHFSWDEAKHPHRRPLSEIVSIIQSSVGKIEEELKQLSTRYTEKKQQLALHQKKKGGNLLVTNLADILTPDIVKTSDFVNTEYLQTLVVVVPKSQEAVWLQEYTSIGDDIA---------------------EFGPKHS-RGNVKGSPVVPHSSRKLLEEGDACLYTVTILKGQYQ 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q6_ECTSI1.300e-9878.19V-type proton ATPase subunit C n=2 Tax=Ectocarpus ... [more]
A0A835Z1N8_9STRA5.940e-6456.38V-type proton ATPase subunit C n=1 Tax=Tribonema m... [more]
A0A7S2CU31_9STRA3.500e-4042.63V-type proton ATPase subunit C n=1 Tax=Florenciell... [more]
A0A7S4UXB0_9STRA3.660e-3943.01V-type proton ATPase subunit C n=1 Tax=Ditylum bri... [more]
A0A7S4UMZ7_9STRA1.380e-3841.49V-type proton ATPase subunit C n=1 Tax=Ditylum bri... [more]
A0A6U4AG43_9STRA3.080e-3843.01V-type proton ATPase subunit C n=3 Tax=Ditylum bri... [more]
A0A485LS38_9STRA1.520e-3642.47V-type proton ATPase subunit C n=1 Tax=Aphanomyces... [more]
K0TGY8_THAOC6.680e-3642.78V-type proton ATPase subunit C (Fragment) n=1 Tax=... [more]
A0A7S2MLU4_9STRA1.280e-3540.32V-type proton ATPase subunit C n=1 Tax=Helicotheca... [more]
W4H5I3_9STRA2.230e-3542.47V-type proton ATPase subunit C n=2 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97809contigH-elongata_contig97809:38..2288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.6
Seed ortholog evalue8e-81
Seed eggNOG ortholog2880.D7G2Q6
Preferred nameATP6V1C2
KEGG koko:K02148
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000003,GO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0000902,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009507,GO:0009536,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009826,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019953,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030177,GO:0030641,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0040007,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045177,GO:0045184,GO:0045851,GO:0046961,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060560,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-exporting ATPase activity, phosphorylative mechanism
EggNOG OGsCOG5127@1,KOG2909@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons3
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97809.17121.1prot_H-elongata_contig97809.17121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97809 38..2288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931368.2401319-CDS-H-elongata_contig97809:37..2411622931368.2401319-CDS-H-elongata_contig97809:37..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97809 38..241 -
1691679807.7163901-CDS-H-elongata_contig97809:37..2411691679807.7163901-CDS-H-elongata_contig97809:37..241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97809 38..241 -
1622931368.2553182-CDS-H-elongata_contig97809:1339..15161622931368.2553182-CDS-H-elongata_contig97809:1339..1516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97809 1340..1516 -
1691679807.7381597-CDS-H-elongata_contig97809:1339..15161691679807.7381597-CDS-H-elongata_contig97809:1339..1516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97809 1340..1516 -
1622931368.2669513-CDS-H-elongata_contig97809:2105..22881622931368.2669513-CDS-H-elongata_contig97809:2105..2288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97809 2106..2288 -
1691679807.7491672-CDS-H-elongata_contig97809:2105..22881691679807.7491672-CDS-H-elongata_contig97809:2105..2288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97809 2106..2288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97809.17121.1

>prot_H-elongata_contig97809.17121.1 ID=prot_H-elongata_contig97809.17121.1|Name=mRNA_H-elongata_contig97809.17121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNIS
LVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLA
VAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNF
SNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ
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mRNA from alignment at H-elongata_contig97809:38..2288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97809.17121.1 ID=mRNA_H-elongata_contig97809.17121.1|Name=mRNA_H-elongata_contig97809.17121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2251bp|location=Sequence derived from alignment at H-elongata_contig97809:38..2288- (Himanthalia elongata Himel1 dioecious)
GTTCAGGTTGCCGGCGTGACAGCTGGGCAGTACGTGCGGCTGTTCGAGTG GGACTACTCGAAGTACGCCGTTCGTCAGAGACTTCCGGCCCTCGTGGCCC TCATCCAGGGAGGCGTGGGGAAGATCGAGGAGGAGCACAGAAACATATCC TTGGTTTTCCAGGAAAAGAACCAGGCCTTGCAGGTCCGGGGCAGTTATTT TCGTTTGTCGCGTTTGTTTAACCACAGCCAGCAGCGTCAGTGTTTCAGGA GTACAGAGCTATGACGTGCATTTTCGTCTCGAAAATAGACGTGCTCCCTT GATTAAGTGTTGACGATGATAGTTGGTCATAAGTCTCTTTCCTGGATCAT CGATGATGACGTCACCATGCATGCTGCAAATGAAGGTGTGGATATTCGGA GGGTTTGAATGAGTTGATGTTCTTAAAAAAATAAAATAAAACTCTACACA TAGTGCACTACTGTTTCTCGTCTCCAATGGAGAGAGCTTGCGGGAGAGCG TTCTGATGTGTTCATTCATCTAACCGTACCACTCCACACACATGGACGGT GTGCAATGACCATTCTGCAAGAGACAGACGAAGCACCAGGGGTCTTGCCG AGGAGCTTCGATTCGTCAACCTTGCCCCAACTCTTTGGTCCTTGTTTTTT TTACTTTAAAAAACTTAAAAAAACTTTTTTCTACAGTACCCTCTTTATTT GGTTACAGTACAGTACTTATCTTCCCCTTTTCCCTTTTGTGATCCCTTGT TTTGGGTTTCTCTCTTGGTCAGGCGCTTAAGCGTAAGAAGGGAAACAACC TTTCCACCGTGGAGCTGTCGGATGTGATATCTACGGAAAAGCTTCGTGGC ATCACCATGGTGGACAGCGAGCACCTCATCACCCTCGCCGTGGCCATCCA GAAGACCCAGGAGAACGAATGGCTCTCCACCTACGAAAAAATCGGGAGCG TAAGTTTTCAATCCACAATGCTCTGCGCGATAGTATTATTTCGTCCTTAG ATTATCCCTGCCCAGTTTATCGCACAATAAGCTCAGAAGTGTGAGCCAGC TAATTCCGTAAACCTATATTCGCGCTGCGGTATTTGCTCTCTTGAAAACG TCGGGGCCATTTGGCAAGGTTGAAGGTATTTTAGACAATCGTGTTGAAGA CGATCGTGTCGGAATGAAAGACGATCGCGTGGCGATTCAAGGCTGTTGGT CACACATTTAGCAGAAGGATCAACCGGATTTGGTTGCCTTCTGCTCGTGG TCATCTGAACAGGGAACATAATTTTCCCCTGTCCCCGTTCGCGCCTGAGA ATTTGGTCTCGCGAGACGGGTTCAGCACTCCCGCCCCACGTCAGCCCGTT CTCTCAACCCAGACTGAATCTGGTTAGTGGCCATCTGAAATCGAGGCAGA TGCGGCGGTTACTCTCTGCCACAATGATTTTGTCTAGGGACTGTACGCTA TTGATATGTTACTTGGATGAGGCGCCGTCACGAAGGCTAAATATATGTAC TGCATATAATATATAATAATTTACATTCGAGTATATAGTACCCTGTATAG TCTATATATACGACTATAATATATATATATATATATATATATTATATAAC ATCTAATATATTTACATTCGAGTATATAGTACCTGGTACAGTATAATAGT CTATATATACCACTATAGTATAGTATAGTATCAATATTATCAATCCCACC TAATGCTGCAACCTACAACATTGTCCATTCCGCTTACTGTAGTCCGAAGC GATCAACCCTCCCCGGTTCATTTACGCCTCCTACCATTAGTTATCGTGAT TTTTATTTTCAGCACTTTTATTGCATACACCTCATCAACTAATAATATGG TTGAAATTTGCTTACACTCCACTCCCTGTTCTCCCTGTTTCCACTACATG GCGTCATCGAACTCACGATTTTCCGCGCGAATGGCTTGCGTGGTCACGAC GACACCACTCGGACGGCGAGTATAAAAAGGTTCACGAAAGTCCGGATTAA GATCCCACGGTTCTTACCCCCTCTCCCCCTCCCCATGTACACTTCAGGAC ATCGCCTCCATGGGAAACCCTGACTGGTCAAACCCCAGCGTGGCGTTTTC GCTGGGCACCCCGGACGGTCAGTTTGGCCCTAACTTCTCTAACCGCGGCG TGGTGAAGGGGTCTCCTGTAGTGCCTAGGTCGAGCCAGAAGATCTTAGAG GACGGCGAGCAAGTGCTGTACACCGTGACCCTTCTTCGAGGACAGTACCA G
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Coding sequence (CDS) from alignment at H-elongata_contig97809:38..2288-

>mRNA_H-elongata_contig97809.17121.1 ID=mRNA_H-elongata_contig97809.17121.1|Name=mRNA_H-elongata_contig97809.17121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig97809:38..2288- (Himanthalia elongata Himel1 dioecious)
GTTCAGGTTGCCGGCGTGACAGCTGGGCAGTACGTGCGGCTGTTCGAGTG
GGACTACTCGAAGTACGCCGTTCGTCAGAGACTTCCGGCCCTCGTGGCCC
TCATCCAGGGAGGCGTGGGGAAGATCGAGGAGGAGCACAGAAACATATCC
TTGGTTTTCCAGGAAAAGAACCAGGCCTTGCAGGTTCAGGTTGCCGGCGT
GACAGCTGGGCAGTACGTGCGGCTGTTCGAGTGGGACTACTCGAAGTACG
CCGTTCGTCAGAGACTTCCGGCCCTCGTGGCCCTCATCCAGGGAGGCGTG
GGGAAGATCGAGGAGGAGCACAGAAACATATCCTTGGTTTTCCAGGAAAA
GAACCAGGCCTTGCAGGCGCTTAAGCGTAAGAAGGGAAACAACCTTTCCA
CCGTGGAGCTGTCGGATGTGATATCTACGGAAAAGCTTCGTGGCATCACC
ATGGTGGACAGCGAGCACCTCATCACCCTCGCCGTGGCCATCCAGAAGAC
CCAGGAGAACGAATGGCTCTCCACCTACGAAAAAATCGGGAGCGCGCTTA
AGCGTAAGAAGGGAAACAACCTTTCCACCGTGGAGCTGTCGGATGTGATA
TCTACGGAAAAGCTTCGTGGCATCACCATGGTGGACAGCGAGCACCTCAT
CACCCTCGCCGTGGCCATCCAGAAGACCCAGGAGAACGAATGGCTCTCCA
CCTACGAAAAAATCGGGAGCGACATCGCCTCCATGGGAAACCCTGACTGG
TCAAACCCCAGCGTGGCGTTTTCGCTGGGCACCCCGGACGGTCAGTTTGG
CCCTAACTTCTCTAACCGCGGCGTGGTGAAGGGGTCTCCTGTAGTGCCTA
GGTCGAGCCAGAAGATCTTAGAGGACGGCGAGCAAGTGCTGTACACCGTG
ACCCTTCTTCGAGGACAGTACCAGGACATCGCCTCCATGGGAAACCCTGA
CTGGTCAAACCCCAGCGTGGCGTTTTCGCTGGGCACCCCGGACGGTCAGT
TTGGCCCTAACTTCTCTAACCGCGGCGTGGTGAAGGGGTCTCCTGTAGTG
CCTAGGTCGAGCCAGAAGATCTTAGAGGACGGCGAGCAAGTGCTGTACAC
CGTGACCCTTCTTCGAGGACAGTACCAG
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