mRNA_H-elongata_contig97809.17121.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: D7G2Q6_ECTSI (V-type proton ATPase subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q6_ECTSI) HSP 1 Score: 301 bits (770), Expect = 1.300e-98 Identity = 147/188 (78.19%), Postives = 175/188 (93.09%), Query Frame = 1
Query: 1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
++VAGV+ GQYVR+FEWDYSK+AVRQRLPALVALIQG VGKIEEEHRN+S+VF EKNQA+QALKRKKGNNL+TVELS+V+S+E+LRG+ MVD+E+L+TLAVA+ K QE +WL YE IGS+IAS+G+PDWSNPSVA+SLGT DGQFGP FS+RGVVKGSPVVP S+QK+LE+GEQVLYTVT+LRGQYQ
Sbjct: 88 LKVAGVSPGQYVRMFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFAEKNQAMQALKRKKGNNLATVELSEVLSSEQLRGVMMVDTENLVTLAVAMGKPQEKDWLEGYESIGSEIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSTQKVLEEGEQVLYTVTVLRGQYQ 275
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A835Z1N8_9STRA (V-type proton ATPase subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N8_9STRA) HSP 1 Score: 212 bits (540), Expect = 5.940e-64 Identity = 106/188 (56.38%), Postives = 141/188 (75.00%), Query Frame = 1
Query: 1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
++V + +YVR EWD++KYAVRQ LPALV IQ +GKIEEE R+++ + EK QA QALKRKK NL T +LS+V++ +KLR IT+V+++HL TL VA+ K QE+ WL TY +IG+DIA+MG+PDWS P+ LG+ +GQ GP FS R KGSPV+P S+ KI+EDG+ LYTVT+L+GQYQ
Sbjct: 97 LRVGALAPDRYVRQLEWDFAKYAVRQPLPALVGTIQSTMGKIEEELRSLTGTYTEKTQAAQALKRKKQANLMTADLSEVLTEDKLRHITLVETDHLTTLIVAVNKNQESAWLDTYHQIGADIAAMGSPDWSAPANRAQLGSINGQHGPEFSQRTATKGSPVIPGSTVKIMEDGDACLYTVTVLKGQYQ 284
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S2CU31_9STRA (V-type proton ATPase subunit C n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU31_9STRA) HSP 1 Score: 150 bits (380), Expect = 3.500e-40 Identity = 81/190 (42.63%), Postives = 121/190 (63.68%), Query Frame = 1
Query: 1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRG--ITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
++V V +++ F+WD +KY R+ LP LV LI GGVG +EE+ +N+S+ EK Q L AL RKKG NL+ L +V++ + ++G + +D+++L T+ V I K E EWL+ Y+ IG+DIA G PDW++ G DG FG +R GSPVVP S+ +++ +GE VLYTV +L+GQY+
Sbjct: 114 LKVGPVPPKRFLEEFQWDIAKYPNRRPLPELVQLILGGVGSVEEDLKNLSINLSEKTQQLSALNRKKGGNLAMAPLEEVLTPDVIQGSGVQFLDTDYLRTVVVVINKAAEPEWLNVYQGIGTDIAGYGGPDWTSGG---GCGQNDGNFGAEI-DRQRETGSPVVPGSATRVVAEGEHVLYTVVILKGQYE 299
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S4UXB0_9STRA (V-type proton ATPase subunit C n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UXB0_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.660e-39 Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
V GV A +Y++ F WDY+KY R+ L LVALI GGV I+EE + +S F +K AL KRKKG NL +L+DV++ + +R + + DSE+L TL VA+ K ++ ST + +GS++ G PDWS S G RG SPVVP S +KI++D + VLYTVT+L+ QY+
Sbjct: 90 VGGVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQVALSEAKRKKGGNLLVADLNDVVTEQAMRSVEVHDSEYLKTLFVAVPKVDMEKFESTIQSLGSNLVGYGGPDWSTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSVKKIMDDKDSVLYTVTILKSQYE 271
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S4UMZ7_9STRA (V-type proton ATPase subunit C n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UMZ7_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.380e-38 Identity = 78/188 (41.49%), Postives = 112/188 (59.57%), Query Frame = 1
Query: 1 VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
+ + V A +Y++ F WDY+KY R+ L LVALI GGV I+EE + +S F +K AL KRKKG NL +L+DV++ + +R + + DSE+L TL VA+ K ++ ST + +GS++ G PDWS S G RG SPVVP S +KI++D + VLYTVT+L+ QY+
Sbjct: 17 LSILPVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQVALSEAKRKKGGNLLVADLNDVVTEQAMRSVEVHDSEYLKTLFVAVPKVDMEKFESTIQSLGSNLVGYGGPDWSTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSVKKIMDDKDSVLYTVTILKSQYE 200
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A6U4AG43_9STRA (V-type proton ATPase subunit C n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U4AG43_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.080e-38 Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
V GV A +Y++ F WDY+KY R+ L LVALI GGV I+EE + +S F +K AL KRKKG NL +L+DV++ + +R + + DSE+L TL VA+ K ++ ST + +GS++ G PDWS S G RG SPVVP S +KI++D + VLYTVT+L+ QY+
Sbjct: 90 VGGVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQVALSEAKRKKGGNLLVADLNDVVTEQAMRSVEVHDSEYLKTLFVAVPKVDMEKFESTIQSLGSNLVGYGGPDWSTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSVKKIMDDKDSVLYTVTILKSQYE 271
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A485LS38_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS38_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.520e-36 Identity = 79/186 (42.47%), Postives = 113/186 (60.75%), Query Frame = 1
Query: 7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
V GV +Y+ F WD +K+ R+ L ++++IQ +GKIEEE + +S + EK Q L ++KKG NL L+D+++ + ++ V+SE+L TL V + K+QE WL+ Y IG+DIA +FGP S RG VKGSPVVP SS+K+LE+GE LYTVT+L+GQYQ
Sbjct: 91 VDGVPVTRYLHHFSWDEAKHPHRRPLSEIISIIQSSIGKIEEELKQLSTRYTEKKQQLALHQKKKGGNLLVANLTDILTPDIVKTSDFVNSEYLQTLVVVVPKSQEEVWLNEYATIGADIA---------------------EFGPKQS-RGAVKGSPVVPNSSRKLLEEGEACLYTVTILKGQYQ 254
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: K0TGY8_THAOC (V-type proton ATPase subunit C (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGY8_THAOC) HSP 1 Score: 141 bits (356), Expect = 6.680e-36 Identity = 80/187 (42.78%), Postives = 118/187 (63.10%), Query Frame = 1
Query: 7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWS-NPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
V GV +G+YV+ F WDY+K+ R+ L LV+LI GGV I+EE + +S + EK ALQ KRK+G NL T +L+DV+ + +R +++ D+E+L TL VA+ + + + +GS++ G PDWS NP+ LG+ + FG G KGSPVVP S +K+ ED E VL+ VT+L+G Y+
Sbjct: 301 VGGVPSGRYVQQFAWDYAKFPNRRPLKELVSLIAGGVSAIDEELKQLSNSYGEKQVALQDAKRKRGGNLMTADLNDVLDEKVMRNVSVKDTEYLRTLFVAVPRAAVENFTADVYTLGSELVGYGGPDWSGNPA---GLGSAE-NFGQGVDRHGK-KGSPVVPGSLEKVTEDSESVLFAVTVLKGMYE 482
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: A0A7S2MLU4_9STRA (V-type proton ATPase subunit C n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLU4_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.280e-35 Identity = 75/186 (40.32%), Postives = 110/186 (59.14%), Query Frame = 1
Query: 7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
V GV A +Y++ F WDY+KY R+ L LVALI GGV I+EE + +S F +K AL KRKKG N +L+DVIS + +R + + ++E+L T+ +A+ K ++ +T E IGS++ G PDW+ S G RG SPVVP S +K+ ED + +L+TVT+L+ QY+
Sbjct: 90 VGGVPAPRYIQQFAWDYAKYPNRRPLKELVALISGGVSAIDEELKQLSQSFADKQLALSEAKRKKGGNFLVADLNDVISEQAMRDVRVFNTEYLKTIFIAVPKVDREKFENTIEGIGSNLVGYGGPDWTTDSRNLGKAVMYGSLVDRHGKRG----SPVVPGSLKKVQEDKDSILFTVTILKSQYE 271
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Match: W4H5I3_9STRA (V-type proton ATPase subunit C n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5I3_9STRA) HSP 1 Score: 137 bits (345), Expect = 2.230e-35 Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 1
Query: 7 VAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISLVFQEKNQALQALKRKKGNNLSTVELSDVISTEKLRGITMVDSEHLITLAVAIQKTQENEWLSTYEKIGSDIASMGNPDWSNPSVAFSLGTPDGQFGPNFSNRGVVKGSPVVPRSSQKILEDGEQVLYTVTLLRGQYQ 564
V GV +Y+ F WD +K+ R+ L +V++IQ VGKIEEE + +S + EK Q L ++KKG NL L+D+++ + ++ V++E+L TL V + K+QE WL Y IG DIA +FGP S RG VKGSPVVP SS+K+LE+G+ LYTVT+L+GQYQ
Sbjct: 91 VDGVPVERYLHHFSWDEAKHPHRRPLSEIVSIIQSSVGKIEEELKQLSTRYTEKKQQLALHQKKKGGNLLVTNLADILTPDIVKTSDFVNTEYLQTLVVVVPKSQEAVWLQEYTSIGDDIA---------------------EFGPKHS-RGNVKGSPVVPHSSRKLLEEGDACLYTVTILKGQYQ 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97809.17121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig97809.17121.1 >prot_H-elongata_contig97809.17121.1 ID=prot_H-elongata_contig97809.17121.1|Name=mRNA_H-elongata_contig97809.17121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp VQVAGVTAGQYVRLFEWDYSKYAVRQRLPALVALIQGGVGKIEEEHRNISback to top mRNA from alignment at H-elongata_contig97809:38..2288- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig97809.17121.1 ID=mRNA_H-elongata_contig97809.17121.1|Name=mRNA_H-elongata_contig97809.17121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2251bp|location=Sequence derived from alignment at H-elongata_contig97809:38..2288- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig97809:38..2288- >mRNA_H-elongata_contig97809.17121.1 ID=mRNA_H-elongata_contig97809.17121.1|Name=mRNA_H-elongata_contig97809.17121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig97809:38..2288- (Himanthalia elongata Himel1 dioecious)back to top |