mRNA_H-elongata_contig97784.17120.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: D7G5I9_ECTSI (Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I9_ECTSI) HSP 1 Score: 128 bits (322), Expect = 2.600e-32 Identity = 68/109 (62.39%), Postives = 77/109 (70.64%), Query Frame = 1
Query: 37 FQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
+ VKVIEK + FRRFGGPIQLASNALS IKAID FF+++ME+FTFTGIRTNGIKDGIRTE D ++ MADM+SLPYTGVIDRPDLQ
Sbjct: 129 YDVKVIEKTNAFRRFGGPIQLASNALSTIKAIDSTFFNKIMEYFTFTGIRTNGIKDGIRTEWYCKFD-------------------AITQMADMYSLPYTGVIDRPDLQ 218
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A1E7FEN7_9STRA (Zeaxanthin epoxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEN7_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.700e-28 Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINA-DDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
G+T L+ F V V EK S+F RFGGPIQ ASNALS +K ID FDR+ME FTFTGIRT GIKDG+R++ +D++D ++ L AD+F LPYTGVIDRPDLQ
Sbjct: 90 GLTAALYMLKKGFDVTVYEKTSQFARFGGPIQFASNALSVLKEIDDRTFDRVMEKFTFTGIRTCGIKDGLRSDGSFRVTNDSLDYLWNPDAPADWFVKFPLKECADLFGLPYTGVIDRPDLQ 211
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A6U4D7Q0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D7Q0_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.770e-28 Identity = 65/121 (53.72%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
G+T LH F VKV EKASEFRRFGGPIQ ASNALS IKAID F ++M+ FTFT R GIKDG+R DD I+ AD+F LPYTGVIDRPDLQ
Sbjct: 53 GLTSALHFQKKGFDVKVYEKASEFRRFGGPIQFASNALSTIKAIDERLFSKIMDRFTFTATRACGIKDGLRASG-FKMDDPSFPWEEEQRPDWFVKFSIMKDAADLFRLPYTGVIDRPDLQ 172
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S2K5B7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5B7_9STRA) HSP 1 Score: 113 bits (282), Expect = 4.730e-27 Identity = 61/122 (50.00%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
G+T L+ F V V EK + F RFGGPIQ ASNALS +K ID FDR+ME FTFTG R GIKDG+R + DD++D ++ L AD++ LPYTGVIDRPDLQ
Sbjct: 101 GLTAALYMLKNGFDVTVYEKTAAFARFGGPIQFASNALSVLKEIDETLFDRVMEKFTFTGTRACGIKDGLRADGSFRMTDDSLDYLFNKDAPADWFVKFPLKECADLYGLPYTGVIDRPDLQ 222
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A835YX74_9STRA (Zeaxanthin epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX74_9STRA) HSP 1 Score: 113 bits (283), Expect = 6.470e-27 Identity = 60/111 (54.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 31 ASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
+ F V V EK F+RFGGPIQLASNALS IKAIDP F+ LM+ FTFTG+RTNGI DG+RTE D ++ ADM LPYTGV+DRPDLQ
Sbjct: 109 SGFDVTVFEKTDSFKRFGGPIQLASNALSTIKAIDPKLFESLMKKFTFTGVRTNGIMDGLRTEWYTKFD-------------------AITAAADMRGLPYTGVVDRPDLQ 200
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S0VSE2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSE2_9CRYP) HSP 1 Score: 112 bits (280), Expect = 1.770e-26 Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 40 QVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
+V+V+EK ++F RFGGPIQLASNAL+ IK ID FDR+M+ FTFTG RTNGIKDGIRT+ + +S MAD F+LPYTGVIDRPDLQ
Sbjct: 112 EVEVLEKTNKFARFGGPIQLASNALATIKGIDENLFDRVMKKFTFTGTRTNGIKDGIRTQWYTKFN-------------------AISDMADYFTLPYTGVIDRPDLQ 200
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S3P6U7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U7_9STRA) HSP 1 Score: 110 bits (275), Expect = 9.490e-26 Identity = 61/122 (50.00%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
G+T L F V V EK + F RFGGPIQ ASNALS +K ID FDR+ME FTFTG RT GIKDG+R + D++D ++ L AD++ LPYTGVIDRPDLQ
Sbjct: 87 GLTAALCMLKKGFDVTVYEKTAAFARFGGPIQFASNALSVLKEIDDVVFDRVMEKFTFTGTRTCGIKDGLRADGSFRMTGDSLDYLWNPDAPADWFVKFPLKQCADLYGLPYTGVIDRPDLQ 208
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: B7FQV6_PHATC (Precursor of protein zeaxanthin epoxidase-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQV6_PHATC) HSP 1 Score: 109 bits (273), Expect = 1.830e-25 Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
G+T L F V V EK + F RFGGPIQ ASNALS +K ID F+R+M+ FTFTG RT GIKDG+R + +D +D ++ L AD+F LPYTGVIDRPDLQ
Sbjct: 95 GLTTALCMLKKGFDVTVYEKTAAFARFGGPIQFASNALSVLKEIDETLFERVMDKFTFTGTRTCGIKDGLRADGSFRMTEDRLDYLWNPDAPADWFVKFPLKQCADLFGLPYTGVIDRPDLQ 216
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S1ZU96_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZU96_TRICV) HSP 1 Score: 109 bits (273), Expect = 1.900e-25 Identity = 59/122 (48.36%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
G+T L F V V EK +EF RFGGPIQ ASNALS +K ID FDR+M+ FTFTG R GIKDG+R + D++D ++ L AD++ LPYTGV+DRPDLQ
Sbjct: 128 GLTAALCMLKKGFDVTVYEKTAEFARFGGPIQFASNALSVLKEIDAELFDRIMDKFTFTGTRACGIKDGLRADGSFRMTGDSLDYVFNPDAPADWFVKFPLKECADLYGLPYTGVVDRPDLQ 249
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S2XX09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX09_9STRA) HSP 1 Score: 102 bits (255), Expect = 2.260e-25 Identity = 57/107 (53.27%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 43 VKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
V V EK EF+RFGGPIQLASNALS IKAID F+++ME FTFTG+RT GIKDG+R+ D + ADM +LPYTGVI+RPDLQ
Sbjct: 11 VSVYEKTDEFKRFGGPIQLASNALSTIKAIDNQLFEKIMEKFTFTGMRTCGIKDGMRSTWYSKFDAIAGA-------------------ADMANLPYTGVINRPDLQ 98 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig97784.17120.1 >prot_H-elongata_contig97784.17120.1 ID=prot_H-elongata_contig97784.17120.1|Name=mRNA_H-elongata_contig97784.17120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDback to top mRNA from alignment at H-elongata_contig97784:1455..2419+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig97784.17120.1 ID=mRNA_H-elongata_contig97784.17120.1|Name=mRNA_H-elongata_contig97784.17120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig97784:1455..2419+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig97784:1455..2419+ >mRNA_H-elongata_contig97784.17120.1 ID=mRNA_H-elongata_contig97784.17120.1|Name=mRNA_H-elongata_contig97784.17120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig97784:1455..2419+ (Himanthalia elongata Himel1 dioecious)back to top |