mRNA_H-elongata_contig97784.17120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97784.17120.1
Unique NamemRNA_H-elongata_contig97784.17120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: D7G5I9_ECTSI (Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.600e-32
Identity = 68/109 (62.39%), Postives = 77/109 (70.64%), Query Frame = 1
Query:   37 FQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            + VKVIEK + FRRFGGPIQLASNALS IKAID  FF+++ME+FTFTGIRTNGIKDGIRTE     D                    ++ MADM+SLPYTGVIDRPDLQ
Sbjct:  129 YDVKVIEKTNAFRRFGGPIQLASNALSTIKAIDSTFFNKIMEYFTFTGIRTNGIKDGIRTEWYCKFD-------------------AITQMADMYSLPYTGVIDRPDLQ 218          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A1E7FEN7_9STRA (Zeaxanthin epoxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEN7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.700e-28
Identity = 64/122 (52.46%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINA-DDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            G+T  L+     F V V EK S+F RFGGPIQ ASNALS +K ID   FDR+ME FTFTGIRT GIKDG+R++      +D++D            ++  L   AD+F LPYTGVIDRPDLQ
Sbjct:   90 GLTAALYMLKKGFDVTVYEKTSQFARFGGPIQFASNALSVLKEIDDRTFDRVMEKFTFTGIRTCGIKDGLRSDGSFRVTNDSLDYLWNPDAPADWFVKFPLKECADLFGLPYTGVIDRPDLQ 211          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A6U4D7Q0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D7Q0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.770e-28
Identity = 65/121 (53.72%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            G+T  LH     F VKV EKASEFRRFGGPIQ ASNALS IKAID   F ++M+ FTFT  R  GIKDG+R       DD                  I+   AD+F LPYTGVIDRPDLQ
Sbjct:   53 GLTSALHFQKKGFDVKVYEKASEFRRFGGPIQFASNALSTIKAIDERLFSKIMDRFTFTATRACGIKDGLRASG-FKMDDPSFPWEEEQRPDWFVKFSIMKDAADLFRLPYTGVIDRPDLQ 172          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S2K5B7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5B7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.730e-27
Identity = 61/122 (50.00%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            G+T  L+     F V V EK + F RFGGPIQ ASNALS +K ID   FDR+ME FTFTG R  GIKDG+R +      DD++D            ++  L   AD++ LPYTGVIDRPDLQ
Sbjct:  101 GLTAALYMLKNGFDVTVYEKTAAFARFGGPIQFASNALSVLKEIDETLFDRVMEKFTFTGTRACGIKDGLRADGSFRMTDDSLDYLFNKDAPADWFVKFPLKECADLYGLPYTGVIDRPDLQ 222          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A835YX74_9STRA (Zeaxanthin epoxidase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX74_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.470e-27
Identity = 60/111 (54.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   31 ASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            + F V V EK   F+RFGGPIQLASNALS IKAIDP  F+ LM+ FTFTG+RTNGI DG+RTE     D                    ++  ADM  LPYTGV+DRPDLQ
Sbjct:  109 SGFDVTVFEKTDSFKRFGGPIQLASNALSTIKAIDPKLFESLMKKFTFTGVRTNGIMDGLRTEWYTKFD-------------------AITAAADMRGLPYTGVVDRPDLQ 200          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S0VSE2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSE2_9CRYP)

HSP 1 Score: 112 bits (280), Expect = 1.770e-26
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   40 QVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            +V+V+EK ++F RFGGPIQLASNAL+ IK ID   FDR+M+ FTFTG RTNGIKDGIRT+     +                    +S MAD F+LPYTGVIDRPDLQ
Sbjct:  112 EVEVLEKTNKFARFGGPIQLASNALATIKGIDENLFDRVMKKFTFTGTRTNGIKDGIRTQWYTKFN-------------------AISDMADYFTLPYTGVIDRPDLQ 200          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S3P6U7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 9.490e-26
Identity = 61/122 (50.00%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            G+T  L      F V V EK + F RFGGPIQ ASNALS +K ID   FDR+ME FTFTG RT GIKDG+R +       D++D            ++  L   AD++ LPYTGVIDRPDLQ
Sbjct:   87 GLTAALCMLKKGFDVTVYEKTAAFARFGGPIQFASNALSVLKEIDDVVFDRVMEKFTFTGTRTCGIKDGLRADGSFRMTGDSLDYLWNPDAPADWFVKFPLKQCADLYGLPYTGVIDRPDLQ 208          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: B7FQV6_PHATC (Precursor of protein zeaxanthin epoxidase-like protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQV6_PHATC)

HSP 1 Score: 109 bits (273), Expect = 1.830e-25
Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            G+T  L      F V V EK + F RFGGPIQ ASNALS +K ID   F+R+M+ FTFTG RT GIKDG+R +      +D +D            ++  L   AD+F LPYTGVIDRPDLQ
Sbjct:   95 GLTTALCMLKKGFDVTVYEKTAAFARFGGPIQFASNALSVLKEIDETLFERVMDKFTFTGTRTCGIKDGLRADGSFRMTEDRLDYLWNPDAPADWFVKFPLKQCADLFGLPYTGVIDRPDLQ 216          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S1ZU96_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZU96_TRICV)

HSP 1 Score: 109 bits (273), Expect = 1.900e-25
Identity = 59/122 (48.36%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVIN-ADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            G+T  L      F V V EK +EF RFGGPIQ ASNALS +K ID   FDR+M+ FTFTG R  GIKDG+R +       D++D            ++  L   AD++ LPYTGV+DRPDLQ
Sbjct:  128 GLTAALCMLKKGFDVTVYEKTAEFARFGGPIQFASNALSVLKEIDAELFDRIMDKFTFTGTRACGIKDGLRADGSFRMTGDSLDYVFNPDAPADWFVKFPLKECADLYGLPYTGVVDRPDLQ 249          
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Match: A0A7S2XX09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX09_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.260e-25
Identity = 57/107 (53.27%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   43 VKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFDRLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSXXXXXXXXXXXMQMILSIMADMFSLPYTGVIDRPDLQ 363
            V V EK  EF+RFGGPIQLASNALS IKAID   F+++ME FTFTG+RT GIKDG+R+      D    +                   ADM +LPYTGVI+RPDLQ
Sbjct:   11 VSVYEKTDEFKRFGGPIQLASNALSTIKAIDNQLFEKIMEKFTFTGMRTCGIKDGMRSTWYSKFDAIAGA-------------------ADMANLPYTGVINRPDLQ 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97784.17120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5I9_ECTSI2.600e-3262.39Zeaxanthin epoxidase, chloroplast n=1 Tax=Ectocarp... [more]
A0A1E7FEN7_9STRA1.700e-2852.46Zeaxanthin epoxidase n=1 Tax=Fragilariopsis cylind... [more]
A0A6U4D7Q0_9STRA2.770e-2853.72Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2K5B7_9STRA4.730e-2750.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A835YX74_9STRA6.470e-2754.05Zeaxanthin epoxidase chloroplast n=1 Tax=Tribonema... [more]
A0A7S0VSE2_9CRYP1.770e-2655.56Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S3P6U7_9STRA9.490e-2650.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7FQV6_PHATC1.830e-2549.18Precursor of protein zeaxanthin epoxidase-like pro... [more]
A0A7S1ZU96_TRICV1.900e-2548.36Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2XX09_9STRA2.260e-2553.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97784contigH-elongata_contig97784:1455..2419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog2880.D7G5I9
Preferred nameZEP
KEGG rclassRC01624,RC03037
KEGG koko:K09838
KEGG ReactionR06946,R06947,R10070
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00372
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.15.21
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97784.17120.1prot_H-elongata_contig97784.17120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97784 1455..2419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931368.151122-CDS-H-elongata_contig97784:1454..16751622931368.151122-CDS-H-elongata_contig97784:1454..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97784 1455..1675 +
1691679807.6604207-CDS-H-elongata_contig97784:1454..16751691679807.6604207-CDS-H-elongata_contig97784:1454..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97784 1455..1675 +
1622931368.1712415-CDS-H-elongata_contig97784:2085..21701622931368.1712415-CDS-H-elongata_contig97784:2085..2170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97784 2086..2170 +
1691679807.6836011-CDS-H-elongata_contig97784:2085..21701691679807.6836011-CDS-H-elongata_contig97784:2085..2170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97784 2086..2170 +
1622931368.1922696-CDS-H-elongata_contig97784:2353..24191622931368.1922696-CDS-H-elongata_contig97784:2353..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97784 2354..2419 +
1691679807.6966913-CDS-H-elongata_contig97784:2353..24191691679807.6966913-CDS-H-elongata_contig97784:2353..2419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97784 2354..2419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97784.17120.1

>prot_H-elongata_contig97784.17120.1 ID=prot_H-elongata_contig97784.17120.1|Name=mRNA_H-elongata_contig97784.17120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
GVTRDLHGNNASFQVKVIEKASEFRRFGGPIQLASNALSCIKAIDPAFFD
RLMEHFTFTGIRTNGIKDGIRTECVINADDTVDSVINADDTVDSVMQMIL
SIMADMFSLPYTGVIDRPDLQVQ*
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mRNA from alignment at H-elongata_contig97784:1455..2419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97784.17120.1 ID=mRNA_H-elongata_contig97784.17120.1|Name=mRNA_H-elongata_contig97784.17120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig97784:1455..2419+ (Himanthalia elongata Himel1 dioecious)
GGTGTCACACGCGACTTGCACGGCAATAACGCCTCCTTCCAGGTGAAAGT GATCGAGAAGGCGAGCGAGTTCAGACGTTTCGGGGGCCCGATCCAGCTGG CATCTAACGCGCTGTCTTGCATAAAGGCGATCGACCCGGCGTTTTTCGAC AGGCTCATGGAGCACTTCACGTTCACGGGGATTCGTACCAACGGCATCAA GGACGGCATCCGGACGGAGTGGTGAGACTTATGTTAATAGTGGGGTCGAT ATCTCACCACTCCTCGGGTGATGCTCGCATCGGCATCGGCATCGGCATCG GCATCGATCGCTGGGTAATCCGGCTCCAAGAGTCTTTCTCTCTCTAATAT ATATATATATATATTGTCCCTTTTTTTATTAATCTAGAAATAGATTGTCC CCCTGCCCGTCTACCTTTCGGGGGGGTGACGATAAAAGTAATAATATTAG GCGTTTGTTTGCGTACGATGTGAGATGAAATGTGTGTAAAGGGATAAATC CACGTCGCTGATCTCGTGCCGACCTCGATCGCGTAGTTTGCCCCTCTTTT CAAAACTAATATTAATACTAGTGTAATTAATGCAGATGATACTGTCGATA GTGTAATTAATGCAGATGATACTGTCGATAGTGTAATTAATGCAGATGAT ACTGTCGATAGTGTAATTAATGCAGATGATACTGTCGATAGTGTAATGCA GATGATACTGTCGATAGTGTAATTAATGCAGATAGCTAAAGACAGAACTA GCGCTAAGCTCGTGTGACGGTGACGGTGTCTGGAAATACGTGGACACAGA CACATGAAACACACACACACACACACACACACAAGGCGTGATGTATTGAT GTATTGATGTATGAATGACAGGTACTGCAAGTTCGACGCGATCACGGAGA TGGCGGACATGTTCTCGCTCCCGTACACGGGCGTTATCGACAGACCAGAC CTTCAGGTTCAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig97784:1455..2419+

>mRNA_H-elongata_contig97784.17120.1 ID=mRNA_H-elongata_contig97784.17120.1|Name=mRNA_H-elongata_contig97784.17120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig97784:1455..2419+ (Himanthalia elongata Himel1 dioecious)
GGTGTCACACGCGACTTGCACGGCAATAACGCCTCCTTCCAGGTGAAAGT
GATCGAGAAGGCGAGCGAGTTCAGACGTTTCGGGGGCCCGATCCAGCTGG
CATCTAACGCGCTGTCTTGCATAAAGGCGATCGACCCGGCGTTTTTCGAC
AGGCTCATGGAGCACTTCACGTTCACGGGGATTCGTACCAACGGCATCAA
GGACGGCATCCGGACGGAGTGGGTGTCACACGCGACTTGCACGGCAATAA
CGCCTCCTTCCAGGTGAAAGTGATCGAGAAGGCGAGCGAGTTCAGACGTT
TCGGGGGCCCGATCCAGCTGGCATCTAACGCGCTGTCTTGCATAAAGGCG
ATCGACCCGGCGTTTTTCGACAGGCTCATGGAGCACTTCACGTTCACGGG
GATTCGTACCAACGGCATCAAGGACGGCATCCGGACGGAGTGTGTAATTA
ATGCAGATGATACTGTCGATAGTGTAATTAATGCAGATGATACTGTCGAT
AGTGTAATGCAGATGATACTGTCGATATGTAATTAATGCAGATGATACTG
TCGATAGTGTAATTAATGCAGATGATACTGTCGATAGTGTAATGCAGATG
ATACTGTCGATAATGGCGGACATGTTCTCGCTCCCGTACACGGGCGTTAT
CGACAGACCAGACCTTCAGGTTCAATAAATGGCGGACATGTTCTCGCTCC
CGTACACGGGCGTTATCGACAGACCAGACCTTCAGGTTCAATAA
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