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Homology
BLAST of mRNA_H-elongata_contig9772.17115.1 vs. uniprot
Match: A0A6H5KRR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRR8_9PHAE) HSP 1 Score: 112 bits (279), Expect = 7.050e-29 Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 2
Query: 2 KTLEEMEGAMEAVNSFVKTAPTFIAKVQAGNRGGVTQTVHCPVHLLPSIQRLSRKIQLESGTNYVFANSKMSTF 223
+ ++E+EGAME VN+FVKTAPTFIAK Q+ + GGVTQTV CPVHLLPSIQRLSRKIQ ESG N VFAN K+ F
Sbjct: 54 RAIQELEGAMETVNNFVKTAPTFIAKAQSTSGGGVTQTVQCPVHLLPSIQRLSRKIQAESGANCVFANCKVRPF 127
BLAST of mRNA_H-elongata_contig9772.17115.1 vs. uniprot
Match: D7FXX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX3_ECTSI) HSP 1 Score: 110 bits (274), Expect = 3.020e-27 Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 2
Query: 2 KTLEEMEGAMEAVNSFVKTAPTFIAKVQAGNRGGVTQTVHCPVHLLPSIQRLSRKIQLESGTNYVFANSKMSTFCVT 232
+ ++E+EGAME VN FVKTAPTFIAK Q+ + GGVTQTV CPV+LLPSIQRLSRKIQ ESG N VFAN K+ F T
Sbjct: 135 RAIQEVEGAMETVNDFVKTAPTFIAKAQSTSGGGVTQTVQCPVNLLPSIQRLSRKIQAESGANCVFANCKVRPFSTT 211
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | K Homology domain, type 1 |
| Ec32 ortholog | Ec-16_005180.1 |
| Exons | 3 |
| Model size | 446 |
| Cds size | 429 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622931367.571445-CDS-H-elongata_contig9772:2366..2600 | 1622931367.571445-CDS-H-elongata_contig9772:2366..2600 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9772 2367..2600 - |
| 1691679807.4681246-CDS-H-elongata_contig9772:2366..2600 | 1691679807.4681246-CDS-H-elongata_contig9772:2366..2600 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9772 2367..2600 - |
| 1622931367.612694-CDS-H-elongata_contig9772:3338..3464 | 1622931367.612694-CDS-H-elongata_contig9772:3338..3464 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9772 3339..3464 - |
| 1691679807.4827857-CDS-H-elongata_contig9772:3338..3464 | 1691679807.4827857-CDS-H-elongata_contig9772:3338..3464 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9772 3339..3464 - |
| 1622931367.6552277-CDS-H-elongata_contig9772:4033..4102 | 1622931367.6552277-CDS-H-elongata_contig9772:4033..4102 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9772 4034..4102 - |
| 1691679807.5030825-CDS-H-elongata_contig9772:4033..4102 | 1691679807.5030825-CDS-H-elongata_contig9772:4033..4102 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig9772 4034..4102 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622931367.6871884-UTR-H-elongata_contig9772:4102..4118 | 1622931367.6871884-UTR-H-elongata_contig9772:4102..4118 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig9772 4103..4118 - |
| 1691679807.5120895-UTR-H-elongata_contig9772:4102..4118 | 1691679807.5120895-UTR-H-elongata_contig9772:4102..4118 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig9772 4103..4118 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9772.17115.1 >prot_H-elongata_contig9772.17115.1 ID=prot_H-elongata_contig9772.17115.1|Name=mRNA_H-elongata_contig9772.17115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MEGAMEAVNSFVKTAPTFIAKVQAGNRGGVTQTVHCPVHLLPSIQRLSRK
IQLESGTNYVFANSKMSTFCVTGDRQNVDEAVRILKRLIAEGNSEMLAAS
FNANGAVGDGDARGERRGPGSGSSSNSSRGWRETAHRLFREGS back to topmRNA from alignment at H-elongata_contig9772:2367..4118- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig9772.17115.1 ID=mRNA_H-elongata_contig9772.17115.1|Name=mRNA_H-elongata_contig9772.17115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-elongata_contig9772:2367..4118- (Himanthalia elongata Himel1 dioecious)
CAAGACGTTGGAGGAGATGGAGGGGGCCATGGAGGCCGTCAACAGTTTTG
TCAAGACCGCGCCCACGTTCATCGCCAAGGTTCAGGTAGACGAGTAAACA
AACGGGCGTTTCCAAAAGAAATACATAATGCTTTGTGCGGAGCTCCCCTT
TCACCCACAACGTTAGTGAGCATTTCGTGTCACATTACTGTTCTCTACTG
GGGTATGCTATTAAATAGTAGTCGCGCGATCTGTTCCCCCTCGATAAGAG
CCCGGGCCTTCATGTCTGCTTTGCTGCTTTGTCCTTCCTTCCTATCGCAG
CCACGGAGACTTTTGTAGACCCTATCTCGTAGAAGGCGTTCTGTCCAGGG
TATAAGGGGTGCAATCCGGGACCTGGAGTGGTATAGATATTGCATAGCGC
GGATATATCCCGTTGTCGGCGAAATAGCAGCACAGACAATAGAAGTAGTA
CTATTACTAGTATCAGTTGAAGTCGTTGGGGTGAAACATTTTTTTGTTTC
GAGAAGAAGACGAACAACAACAATTAATCCATTCATTTTTGCATTCCGAA
TAACTGTACTTGCGGGGACCTTCTCACTTTTGTCCTGATCCTTACCGCAC
CTCACCGCACCGCACCATTATACGATATTGGCACTTGGCGACAAATGAAC
GCAGGCGGGAAACAGGGGAGGTGTCACGCAGACCGTTCACTGCCCAGTGC
ACTTACTGCCGTCGATACAGCGGCTCAGCCGGAAGATACAGCTTGAGAGT
GGAACAAATTACGTCTTCGCTAACAGCAAGGTGAACGATTAGCCTATCAT
AAGTGGCCTAGGGATCAAAAGCTTCAACAAACTTCCGAAAGATTGGCCGC
TGGTTCGACTCCTAAAGAAAGGAAAAATTGCCTCTGGTTTGATTACGAGG
TGTGGGGGGGGGGGAGGGCAGGGTGACTAGAGACTTGTACGTGGTGAACG
GATACGGCCTCGGAATTGCGGACCAGTGCCCAAGCTTTATTTGTTTTTAT
TAGGTTGACCCTTAGACCACTTGTAGCCACCACACACGTGACAACGAAGT
GGTCTAAGGGTCAGCCTAAGATAAACGAAAATGCGGGACACGCGACCGCC
GTCATTGTGCGATGCGCCACGAGGCTGTAGGAGCGTGTACAGCAACGCCG
CCGTGCGCCATGACCGCTCCTATGTCCGGTTTCCCGCCGTTTGGTACATG
CTTGGTTGATGTTGGCGAGGGGAAAGTCGCGTGGGGGCTAGGTTCGCTCG
TTACCCCTGCGCGGGTTGAAGCCGTCACACACTCACACACCCAGAAGCAG
CCTTGATTGTTTAGAACGCCCTTCCCACGGTGCACCTTGCCGTAATGATA
ATGATAAGGATAATGACAGTAATAGTAATAATGATGAAAACAGTTGCATT
TATGTGGGCAGGTATTCTGTCGGGAGAACGTGTCACCTGACCCCCCCCCC
TTTCCTTCCCCCGACGCCATATTAAGTTTCTATATGTTATTGACCGACTG
ACCGACGGCGCGGGGCAGATGTCAACGTTTTGCGTGACGGGAGACAGGCA
AAACGTGGACGAGGCTGTTAGGATCCTCAAGCGCCTGATTGCCGAAGGGA
ACTCGGAGATGCTAGCAGCCAGCTTTAACGCAAACGGTGCTGTTGGAGAC
GGAGATGCTCGTGGAGAGAGGAGAGGCCCCGGGAGCGGCAGCAGCAGCAA
CAGTAGCCGAGGCTGGCGAGAAACGGCTCACAGACTATTTCGGGAAGGGA
GC back to topCoding sequence (CDS) from alignment at H-elongata_contig9772:2367..4118- >mRNA_H-elongata_contig9772.17115.1 ID=mRNA_H-elongata_contig9772.17115.1|Name=mRNA_H-elongata_contig9772.17115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig9772:2367..4118- (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGGCCATGGAGGCCGTCAACAGTTTTGTCAAGACCGCGCCCAC
GTTCATCGCCAAGGTTCAGATGGAGGGGGCCATGGAGGCCGTCAACAGTT
TTGTCAAGACCGCGCCCACGTTCATCGCCAAGGTTCAGGCGGGAAACAGG
GGAGGTGTCACGCAGACCGTTCACTGCCCAGTGCACTTACTGCCGTCGAT
ACAGCGGCTCAGCCGGAAGATACAGCTTGAGAGTGGAACAAATTACGTCT
TCGCTAACAGCAAGGCGGGAAACAGGGGAGGTGTCACGCAGACCGTTCAC
TGCCCAGTGCACTTACTGCCGTCGATACAGCGGCTCAGCCGGAAGATACA
GCTTGAGAGTGGAACAAATTACGTCTTCGCTAACAGCAAGATGTCAACGT
TTTGCGTGACGGGAGACAGGCAAAACGTGGACGAGGCTGTTAGGATCCTC
AAGCGCCTGATTGCCGAAGGGAACTCGGAGATGCTAGCAGCCAGCTTTAA
CGCAAACGGTGCTGTTGGAGACGGAGATGCTCGTGGAGAGAGGAGAGGCC
CCGGGAGCGGCAGCAGCAGCAACAGTAGCCGAGGCTGGCGAGAAACGGCT
CACAGACTATTTCGGGAAGGGAGCATGTCAACGTTTTGCGTGACGGGAGA
CAGGCAAAACGTGGACGAGGCTGTTAGGATCCTCAAGCGCCTGATTGCCG
AAGGGAACTCGGAGATGCTAGCAGCCAGCTTTAACGCAAACGGTGCTGTT
GGAGACGGAGATGCTCGTGGAGAGAGGAGAGGCCCCGGGAGCGGCAGCAG
CAGCAACAGTAGCCGAGGCTGGCGAGAAACGGCTCACAGACTATTTCGGG
AAGGGAGC back to top
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