mRNA_H-elongata_contig97410.17100.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97410.17100.1
Unique NamemRNA_H-elongata_contig97410.17100.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: D7FJH9_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH9_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.930e-32
Identity = 76/121 (62.81%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 VPPTATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQVTNVLRR 363
            VPP ATVIT++EL +MK+RAIITSLADE+AAR  RE  LEE+Q+A                   LKSDIEVE+MAHD +VKK+ATEKLD N+D+VKMLNSLGARAAAFTIRD+Q+    RR
Sbjct:   62 VPPKATVITEEELAQMKRRAIITSLADEEAARVGRENMLEERQRAXXXXXXXXXXXXXXXXXXXLKSDIEVERMAHDQMVKKMATEKLDANNDLVKMLNSLGARAAAFTIRDKQLAEKDRR 182          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A835YY84_9STRA (Tumor suppressor, Mitostatin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY84_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.210e-15
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    7 PTATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQVTN 351
            P  T+++  EL  +++ AII S ++E A R                    M+QM  +AK KA +SD+E+E +A + +V+K+A EKLD N+D+VKMLNSLG+RAAAFTIRD+Q+ +
Sbjct:   58 PNTTMLSTKELHSIREHAIIKSNSEEQAERXXXXXXXXXXXXXXXXXXXXMIQMADEAKAKAKRSDLELETIAREQLVRKMANEKLDENNDLVKMLNSLGSRAAAFTIRDQQLAD 172          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A7S2V109_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V109_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.910e-11
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   13 ATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQVTNVLR 360
            A VI++ +L  MK R +I + AD  A   ++E+                         KA KSDIE+ +MA D  V+K+A EK++   D+VK+LN+LGARAAAFTIRD Q++   R
Sbjct:   33 AVVISRRDLQAMKARTVIKTEADMRAEHLAKEEERXXXXXXXXXXXXXXXXXXXXXXXKAKKSDIEIAQMARDQTVRKLAEEKMNEESDMVKLLNTLGARAAAFTIRDEQLSEKAR 148          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A8J2SPE8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPE8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.190e-10
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 VPPTATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQV 345
            +P  A VI+  EL +++    I + A+    +   E     K KAARARK RM  +   +K KA KS +E+EK A    ++++A + LD N D+VK L  +GARAAAFTIRD+Q+
Sbjct:   21 LPARAAVISAAELRRIQGSTRIITAAEIQKDKDELEAIHAVKHKAARARKDRMRALAAASKNKAKKSTMELEKEARKETIRQMADKTLDENLDLVKYLRGIGARAAAFTIRDQQL 135          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: T0RIP4_SAPDV (TPH domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RIP4_SAPDV)

HSP 1 Score: 66.6 bits (161), Expect = 2.260e-10
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 VPPT-ATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIE-VEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQV 345
            VP T ATV+   EL++++    I + A+ +A    +E++ E+ +  ARARKQ M++   +A  +A KSDIE +    +DAI K+ A  K D  HD VK++ +LGARAAAFTIRD Q+
Sbjct:   70 VPATIATVLPPHELSRIRGTTRILTDAEREAIAAKKEEDTEKLRIHARARKQHMMERAAEAATRAPKSDIEQIFDAENDAIRKRAAMLK-DQAHDSVKLMKTLGARAAAFTIRDEQI 185          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A067BWU6_SAPPC (TPH domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BWU6_SAPPC)

HSP 1 Score: 66.2 bits (160), Expect = 3.060e-10
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   13 ATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIE-VEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQV 345
            ATV+   EL++++    I S A+ +A    +E++ E+ +  ARARKQ M++   +A  +A KSDIE +    +DAI K+ A  K D  HD VK++ +LGARAAAFTIRD Q+
Sbjct:   75 ATVLPPHELSRIRGTTRILSDAEREAMAAKKEEDNEKLRIHARARKQHMMERAAEAATRAPKSDIEQIFDAENDAIRKRAAMLK-DQAHDSVKLMKTLGARAAAFTIRDEQI 185          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A7S3UXE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXE1_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-9
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 VPPTATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQVTN 351
            VP  A+++T+ +L +MK  A++ +  D    R + E   E K+                      KSD+EVEK+A D  ++++A  K+    D+VK+LN+LGARAAAFTIRD+Q+ N
Sbjct:   76 VPANASIVTRSDLMRMKAGAVLKTEQDLINEREAAEAEREIKEXXXXXXXXXXXXXXXXXXXXXXKSDLEVEKIARDQQIRQMAEAKMTEETDLVKLLNTLGARAAAFTIRDQQLEN 192          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A1V9ZPK3_9STRA (TPH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZPK3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.360e-9
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   34 ELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQV 345
            E+ +++    I + +D +A    +E+++E  +  ARARKQ M++   +A  +A KS+IE    A +  ++K A    D  HD VK++ +LGARAAAFTIRD Q+
Sbjct:   84 EIARIRSTTRILTDSDREAIAAKKEEDMERLRIHARARKQHMMERAAEAATRAPKSEIEQIFEAENEAIRKRAAMLKDQAHDSVKLMKTLGARAAAFTIRDEQI 187          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A2D4CJF6_PYTIN (TPH domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJF6_PYTIN)

HSP 1 Score: 61.6 bits (148), Expect = 1.120e-8
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    4 PPTATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQ 342
            PP   V+ + +L ++KQ A I + A  +     RE  LE+ + +A+ARK+ M ++  DA  +A KS+I+    A    V + A    D +HD VK++ +LGARA AFTIRD Q
Sbjct:   96 PPAPRVVDESDLERIKQEAKILTPAHMEELAAKREAELEQIRLSAKARKEHMQRLGEDAARRAPKSEIDQLLYAEKQQVLRKAAILKDLDHDSVKLMRTLGARAQAFTIRDEQ 208          
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Match: A0A1V9ZC41_9STRA (TPH domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC41_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.370e-8
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1
Query:   13 ATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARKQRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNSLGARAAAFTIRDRQV 345
            A V+   EL +++    I S AD +A    +E+  E+ +  ARARKQ M++    A  +A KS+IE    A +  ++  A    D  HD VK++ +LGARAAAFTIRD Q+
Sbjct:   69 AHVVEPTELDRIRGSTRILSDADNEAIAAKKEEEAEKLRIHARARKQHMMERAAHAAKRAPKSEIEQIFEAENQAIRTRAAMLKDQAHDSVKLMKTLGARAAAFTIRDEQI 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97410.17100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FJH9_ECTSI2.930e-3262.81TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YY84_9STRA1.210e-1543.48Tumor suppressor, Mitostatin-domain-containing pro... [more]
A0A7S2V109_9STRA4.910e-1139.66Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2SPE8_9STRA1.190e-1041.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
T0RIP4_SAPDV2.260e-1043.59TPH domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A067BWU6_SAPPC3.060e-1043.75TPH domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A7S3UXE1_HETAK1.460e-936.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9ZPK3_9STRA9.360e-938.46TPH domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A2D4CJF6_PYTIN1.120e-838.94TPH domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A1V9ZC41_9STRA2.370e-839.64TPH domain-containing protein n=1 Tax=Thraustothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97410contigH-elongata_contig97410:312..1709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog4787.PITG_14740T0
EggNOG free text desc.Trichohyalin-plectin-homology domain
EggNOG OGs2CVFG@1,2RRXN@2759,3QBZF@4776
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_006190.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97410.17100.1prot_H-elongata_contig97410.17100.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97410 312..1709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931365.7003617-CDS-H-elongata_contig97410:311..4641622931365.7003617-CDS-H-elongata_contig97410:311..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97410 312..464 -
1691679806.6779952-CDS-H-elongata_contig97410:311..4641691679806.6779952-CDS-H-elongata_contig97410:311..464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97410 312..464 -
1622931365.7197104-CDS-H-elongata_contig97410:1083..11731622931365.7197104-CDS-H-elongata_contig97410:1083..1173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97410 1084..1173 -
1691679806.691041-CDS-H-elongata_contig97410:1083..11731691679806.691041-CDS-H-elongata_contig97410:1083..1173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97410 1084..1173 -
1622931365.7367957-CDS-H-elongata_contig97410:1589..17091622931365.7367957-CDS-H-elongata_contig97410:1589..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97410 1590..1709 -
1691679806.7129266-CDS-H-elongata_contig97410:1589..17091691679806.7129266-CDS-H-elongata_contig97410:1589..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97410 1590..1709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97410.17100.1

>prot_H-elongata_contig97410.17100.1 ID=prot_H-elongata_contig97410.17100.1|Name=mRNA_H-elongata_contig97410.17100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
VPPTATVITKDELTKMKQRAIITSLADEDAARTSREKNLEEKQKAARARK
QRMVQMELDAKMKALKSDIEVEKMAHDAIVKKIATEKLDGNHDVVKMLNS
LGARAAAFTIRDRQVTNVLRR
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mRNA from alignment at H-elongata_contig97410:312..1709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97410.17100.1 ID=mRNA_H-elongata_contig97410.17100.1|Name=mRNA_H-elongata_contig97410.17100.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1398bp|location=Sequence derived from alignment at H-elongata_contig97410:312..1709- (Himanthalia elongata Himel1 dioecious)
GTACCTCCCACAGCGACGGTAATCACGAAGGACGAGCTCACAAAAATGAA ACAGCGTGCGATCATCACTTCCCTCGCTGATGAAGATGCCGCCAGGACCT CGAGGGAAAAAAATCTTGAGGTTACTGTGTGTATGTGTGTATGTCTGTGT GTGTGTCTGTCTGTGTGTCGCTCACTCCAACGAAGTTCGCGGGGTCTTGA CTTGTCGGAGAACCCGTCCGTCGTTGCACGTGCCGAGCCTATCGTGCCCC CAACACCATATGGCGTCACGCCCTTCCTTGTGCAAGTGGTGGGCTGCCTT TCCTCGAATGAAGTATTAATTAGATACCGTAGTGGTTATTGTGAAGAGAG ACGACGGTTCTTTTCTCCAGGGTGGTGCCTCCTCTAGGGTGGTGCCTTGT TCGCATTCCTGACAGATCTGACAGGCGCGCAGCGTAGAGCACGCGATGGA GGGCTGACCCGGTTCGTGCTTGACTCGGCGATTGCGCGTTCGTGTGGTGA TCCGGTTCGGTCGTGGGGAGGGTGAATGATTCACAGGAGAAGCAAAAGGC GGCCCGCGCACGCAAGCAACGCATGGTTCAGATGGAGTTAGACGCCAAGA TGAAGGCGTTGAAGAGCGACATCGAGGTGCGTAGGGAGTTGGAGGCGTGG GATGTTGTGTATAACAGCTTTCCCGGCGATAAAATATGATGGTTGCGCCG GGCTTCGTGTGTCGAGCCTCGGTCCAGGAGGCACGCTGTTAGCGCAGCGA GAAAACCGCCAAGAGACTTTGGCGCCACGGGAGTGGCGAGCCGGGACAAA TGCCTGGGAGTCATCGTCGACGGTAGCCATCGGTGTCGGTAGCTGAAGCA AGTCACCATCGTGTGTTGAGATCGCGAACCCGGCGCTTGGGACTAAAGGA CGTGCGTTTGACCGACGGGTGTTCCTGCCCGTGACCAACAGCACGCACGA AATCGACCAACAGGACTCACGACTCCTCGATGAAACCTTATGTTGGGATT GAAGTATATAGTATATAGATGGGGGAGGGGTGATATAATGTAATATAATG TAATACAATATCATATAATGTCATATAATGTCATATATTTCATAAATAAA TCCCCTCGTGGAATGATCCATGCTCGGGGCAAACTACCCTGTCAAGCAAA TGAATGGATAACCCCGTAGGGGCTATTTTTATTCCCCCTCCCCCTCCCCA ACCGCCTCTGTCGGTGAATCGGTGAATCGAATCATTCGAACCCAGGTGGA GAAAATGGCCCACGACGCGATCGTGAAGAAGATTGCCACGGAAAAGCTCG ACGGCAACCACGACGTCGTGAAGATGCTAAACTCTCTCGGTGCGCGAGCG GCGGCGTTCACCATTCGCGACAGGCAGGTGACTAACGTTCTGCGGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig97410:312..1709-

>mRNA_H-elongata_contig97410.17100.1 ID=mRNA_H-elongata_contig97410.17100.1|Name=mRNA_H-elongata_contig97410.17100.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig97410:312..1709- (Himanthalia elongata Himel1 dioecious)
GTACCTCCCACAGCGACGGTAATCACGAAGGACGAGCTCACAAAAATGAA
ACAGCGTGCGATCATCACTTCCCTCGCTGATGAAGATGCCGCCAGGACCT
CGAGGGAAAAAAATCTTGAGGTACCTCCCACAGCGACGGTAATCACGAAG
GACGAGCTCACAAAAATGAAACAGCGTGCGATCATCACTTCCCTCGCTGA
TGAAGATGCCGCCAGGACCTCGAGGGAAAAAAATCTTGAGGAGAAGCAAA
AGGCGGCCCGCGCACGCAAGCAACGCATGGTTCAGATGGAGTTAGACGCC
AAGATGAAGGCGTTGAAGAGCGACATCGAGGAGAAGCAAAAGGCGGCCCG
CGCACGCAAGCAACGCATGGTTCAGATGGAGTTAGACGCCAAGATGAAGG
CGTTGAAGAGCGACATCGAGGTGGAGAAAATGGCCCACGACGCGATCGTG
AAGAAGATTGCCACGGAAAAGCTCGACGGCAACCACGACGTCGTGAAGAT
GCTAAACTCTCTCGGTGCGCGAGCGGCGGCGTTCACCATTCGCGACAGGC
AGGTGACTAACGTTCTGCGGCGGGTGGAGAAAATGGCCCACGACGCGATC
GTGAAGAAGATTGCCACGGAAAAGCTCGACGGCAACCACGACGTCGTGAA
GATGCTAAACTCTCTCGGTGCGCGAGCGGCGGCGTTCACCATTCGCGACA
GGCAGGTGACTAACGTTCTGCGGCGG
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