mRNA_H-elongata_contig97207.17089.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97207.17089.1
Unique NamemRNA_H-elongata_contig97207.17089.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97207.17089.1 vs. uniprot
Match: D7FV21_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV21_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.790e-28
Identity = 58/87 (66.67%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    4 QSWLQEQTALSKFDGYRDSEALSCVKPTAAPAPSSLLLGSVTPPEAGRSVDVVYDPQNSSADWSGFLPRHCTGRRMHPE--PAAHRE 258
            QSWLQEQ + SKFDGYRDS+  S VK TAAPAP++        PEAGR+ DVVYDPQ++SADWSGF PRH  GRRMH    PAAHRE
Sbjct:   40 QSWLQEQASRSKFDGYRDSQQFSNVKVTAAPAPTACSAA----PEAGRNGDVVYDPQDASADWSGFAPRHTAGRRMHHTGLPAAHRE 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97207.17089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV21_ECTSI4.790e-2866.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97207contigH-elongata_contig97207:2035..2292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931364.5984442-CDS-H-elongata_contig97207:2034..22921622931364.5984442-CDS-H-elongata_contig97207:2034..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97207 2035..2292 +
1691679806.2194805-CDS-H-elongata_contig97207:2034..22921691679806.2194805-CDS-H-elongata_contig97207:2034..2292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97207 2035..2292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97207.17089.1prot_H-elongata_contig97207.17089.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97207 2035..2292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97207.17089.1

>prot_H-elongata_contig97207.17089.1 ID=prot_H-elongata_contig97207.17089.1|Name=mRNA_H-elongata_contig97207.17089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
KQSWLQEQTALSKFDGYRDSEALSCVKPTAAPAPSSLLLGSVTPPEAGRS
VDVVYDPQNSSADWSGFLPRHCTGRRMHPEPAAHRE
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mRNA from alignment at H-elongata_contig97207:2035..2292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97207.17089.1 ID=mRNA_H-elongata_contig97207.17089.1|Name=mRNA_H-elongata_contig97207.17089.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig97207:2035..2292+ (Himanthalia elongata Himel1 dioecious)
AAACAGTCGTGGCTTCAGGAGCAAACCGCACTCAGTAAGTTCGACGGTTA
CCGAGATAGCGAGGCACTGTCGTGCGTGAAGCCCACCGCCGCCCCGGCAC
CCTCGTCGTTGCTACTGGGGTCCGTTACACCTCCTGAGGCCGGAAGGAGC
GTTGACGTGGTTTACGATCCTCAAAATTCATCAGCCGATTGGTCTGGCTT
CTTACCACGGCATTGCACTGGGCGCCGAATGCATCCGGAGCCTGCGGCGC
ACAGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig97207:2035..2292+

>mRNA_H-elongata_contig97207.17089.1 ID=mRNA_H-elongata_contig97207.17089.1|Name=mRNA_H-elongata_contig97207.17089.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig97207:2035..2292+ (Himanthalia elongata Himel1 dioecious)
AAACAGTCGTGGCTTCAGGAGCAAACCGCACTCAGTAAGTTCGACGGTTA
CCGAGATAGCGAGGCACTGTCGTGCGTGAAGCCCACCGCCGCCCCGGCAC
CCTCGTCGTTGCTACTGGGGTCCGTTACACCTCCTGAGGCCGGAAGGAGC
GTTGACGTGGTTTACGATCCTCAAAATTCATCAGCCGATTGGTCTGGCTT
CTTACCACGGCATTGCACTGGGCGCCGAATGCATCCGGAGCCTGCGGCGC
ACAGAGAGAAACAGTCGTGGCTTCAGGAGCAAACCGCACTCAGTAAGTTC
GACGGTTACCGAGATAGCGAGGCACTGTCGTGCGTGAAGCCCACCGCCGC
CCCGGCACCCTCGTCGTTGCTACTGGGGTCCGTTACACCTCCTGAGGCCG
GAAGGAGCGTTGACGTGGTTTACGATCCTCAAAATTCATCAGCCGATTGG
TCTGGCTTCTTACCACGGCATTGCACTGGGCGCCGAATGCATCCGGAGCC
TGCGGCGCACAGAGAG
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