mRNA_H-elongata_contig97145.17084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97145.17084.1
Unique NamemRNA_H-elongata_contig97145.17084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: D7FKC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 5.980e-19
Identity = 45/68 (66.18%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADVARK 204
            V EEME AS GLK+ELEQ ML++L+++DE++LRFRVAQL+TELQ+RTKWEALRL++G+++KEA+++ K
Sbjct:  236 VAEEMEVASAGLKRELEQSMLKDLKDLDEDSLRFRVAQLATELQERTKWEALRLMDGVQKKEAEISDK 303
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A6H5L3V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.050e-19
Identity = 45/68 (66.18%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADVARK 204
            V EEME AS GLK+ELEQ ML++L+++DE++LRFRVAQL+TELQ+RTKWEALRL++G+++KEA+++ K
Sbjct:  471 VAEEMEVASAGLKRELEQSMLKDLKDLDEDSLRFRVAQLATELQERTKWEALRLMDGVQKKEAEISDK 538
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A7S3XVG6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVG6_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 9.510e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   19 AASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADVA 198
            A S  L+ ELEQG+L++L  +DE  LR+R+ QL+ ELQ+RTKWEALRL EG+K+  A+ A
Sbjct:   17 AESAALRLELEQGLLRDLEGLDEAGLRYRITQLAAELQERTKWEALRLHEGLKRAAAEAA 76
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A835YW45_9STRA (Mitochondrial inner membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW45_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.740e-7
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    7 EEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADVA 198
            EE+  A   L+KELE  +L ++  +DE+ALR++V QL+ E+Q+RTKWEALRL + +K  E + +
Sbjct:  292 EEVMEAGAALRKELEATVLADIDKLDEQALRYKVVQLAAEMQNRTKWEALRLQQSLKATEEEAS 355
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A485K6B0_9STRA (Aste57867_1696 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K6B0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.750e-7
Identity = 28/65 (43.08%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADV 195
            V ++  A S+ L +EL+  +L  ++ +D ++LR RVAQL+TE+++RTKWEA+R++E +K+ E +V
Sbjct:  291 VVKKARAESEALSEELDHTILAGIKELDADSLRLRVAQLATEMKNRTKWEAVRMMESLKRMEEEV 355
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A6G0X3I8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3I8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.750e-7
Identity = 27/65 (41.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADV 195
            V ++  A ++ L +EL+  +L +++ +D E LR RVAQL+TE+++R+KWEA+R++E +K+ E +V
Sbjct:  294 VVKKARAEAEALSEELDHTILADIKELDAETLRLRVAQLATEMKNRSKWEAVRMLESLKRMEEEV 358
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A024UMQ7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMQ7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.600e-7
Identity = 27/65 (41.54%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADV 195
            V ++  A ++ L +EL+  +L +++ +D E+LR RVAQL+TE+++R+KWEA+RL+E +++ E +V
Sbjct:  318 VVKKARAEAEALVEELDHTILADIKELDAESLRLRVAQLATEMKNRSKWEAVRLMESLRRMEEEV 382
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BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A397BWW2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BWW2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.600e-7
Identity = 28/65 (43.08%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADV 195
            V ++  A +D L +EL+  +L  ++ +D E+LR RVAQL+TE+++R+KWEA+RL+E +++ E +V
Sbjct:  328 VVKKARAEADALGEELDHTILAGIKELDAESLRLRVAQLATEMKNRSKWEAVRLMESLRRMEEEV 392
[Close]
BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: A0A397EY15_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EY15_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.670e-7
Identity = 28/65 (43.08%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 VTEEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADV 195
            V ++  A +D L +EL+  +L  ++ +D E+LR RVAQL+TE+++R+KWEA+RL+E +++ E +V
Sbjct:  576 VVKKARAEADALGEELDHTILAGIKELDAESLRLRVAQLATEMKNRSKWEAVRLMESLRRMEEEV 640
[Close]
BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Match: W7TLX9_9STRA (Mitochondrial inner membrane protein Mitofilin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLX9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.770e-6
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    7 EEMEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRLIEGIKQKEADVARK 204
            EE  A  + L+  LEQ +L++L  +  EAL+ RV QL  ELQ+RTKWEALRL E +++ E +V+ K
Sbjct:  116 EEALAQGEALRNHLEQTLLKDLAVLSNEALQLRVVQLVGELQERTKWEALRLHEAVRKAEMEVSGK 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97145.17084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FKC6_ECTSI5.980e-1966.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3V0_9PHAE6.050e-1966.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XVG6_HETAK9.510e-1256.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YW45_9STRA2.740e-746.88Mitochondrial inner membrane protein-domain-contai... [more]
A0A485K6B0_9STRA3.750e-743.08Aste57867_1696 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0X3I8_9STRA3.750e-741.54Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UMQ7_9STRA9.600e-741.54Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A397BWW2_9STRA9.600e-743.08Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A397EY15_9STRA9.670e-743.08Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
W7TLX9_9STRA1.770e-648.48Mitochondrial inner membrane protein Mitofilin n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97145contigH-elongata_contig97145:890..1889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog2880.D7FKC6
Preferred nameMIC60
KEGG koko:K17785
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0030061,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0061617,GO:0065002,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1990542
EggNOG free text desc.cristae formation
EggNOG OGsKOG1854@1,KOG1854@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97145.17084.1prot_H-elongata_contig97145.17084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97145 890..1877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931364.014429-CDS-H-elongata_contig97145:889..10271622931364.014429-CDS-H-elongata_contig97145:889..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97145 890..1027 -
1691679805.9878204-CDS-H-elongata_contig97145:889..10271691679805.9878204-CDS-H-elongata_contig97145:889..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97145 890..1027 -
1622931364.0631037-CDS-H-elongata_contig97145:1823..18771622931364.0631037-CDS-H-elongata_contig97145:1823..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97145 1824..1877 -
1691679806.0010462-CDS-H-elongata_contig97145:1823..18771691679806.0010462-CDS-H-elongata_contig97145:1823..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97145 1824..1877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931364.0793214-UTR-H-elongata_contig97145:1877..18891622931364.0793214-UTR-H-elongata_contig97145:1877..1889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97145 1878..1889 -
1691679806.0110006-UTR-H-elongata_contig97145:1877..18891691679806.0110006-UTR-H-elongata_contig97145:1877..1889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97145 1878..1889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97145.17084.1

>prot_H-elongata_contig97145.17084.1 ID=prot_H-elongata_contig97145.17084.1|Name=mRNA_H-elongata_contig97145.17084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MEAASDGLKKELEQGMLQELRNMDEEALRFRVAQLSTELQDRTKWEALRL
IEGIKQKEADVARK
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mRNA from alignment at H-elongata_contig97145:890..1889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97145.17084.1 ID=mRNA_H-elongata_contig97145.17084.1|Name=mRNA_H-elongata_contig97145.17084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1000bp|location=Sequence derived from alignment at H-elongata_contig97145:890..1889- (Himanthalia elongata Himel1 dioecious)
GTGACGGAGGAGATGGAGGCTGCTTCGGATGGGCTCAAGAAGGAGCTCGA
GCAAGGAATGCTCCAGGTATCCCCCACCTCATCCCTTGCCTTACCGTTGC
TGTTGTTGCTTCTGTTGTTGTGAATGTACGTTTTATGGCTTCCGTTTGAC
GTCTGTCCTGCCGCCTCAGATCGTCTCCGTTTGCGGGGGCCCATGTGCGA
TGACGTGGTACGTTATCGTGTTCCGTTGTTGTGTACGAAAATGTGTCGTG
TAGTACGTACGATACCGTGGTTCGTGGAACAGTCAAAGAGTGCAGTCTGT
GGTGTACATGGTAAAAGTATACCATGGTACCGTGGGTGGTTATGGTGTTA
TGTGGTGCGTGTGGGAATATGGAACGTGTGGTATTATGGTACATTTGGTA
TCTTGTGACAGTGTGGTATACATGAAGAATGCGGTCGTAGAGTGGTGGTG
GTGGTGTCGTATGGTGCCTAATATATGGTACGTATGATACGTGTTGTAGA
TGGTACGGTGTGGTGTGGTACATGTACAGCCAGTTGTGATTTGTTCATGG
TGTGTCCGGATAGAATGGGATATGGAATGGAATATGGGATTAGGCGATCG
AGCTACCGGCGGGCCCAGCGCTCTTCGCTAATATCGCGCGTGCTCGGCAG
TATCGACATGTCGCGGCGTCGTACGTAGCTTTGCGACTACTAATTTCGGT
GGCTCTGGCTTTTTTTTTTATTCTTTTTTTGTTTTTTGTTTTTTGTTTTT
CTCTCTTTTTCTATATTTATATTTATGCACCTCATATATTTATGCACCTC
ATATATTTATTTATTTATTTATTTATTTATTTATTTCGGGGGGGGGGGTG
GCGTCTCCGCAGGAGCTGAGGAATATGGACGAAGAAGCCCTTCGCTTTCG
AGTGGCGCAGCTTTCAACCGAGCTTCAGGACAGGACGAAATGGGAGGCGC
TCCGGCTGATTGAGGGCATCAAACAAAAGGAGGCTGACGTCGCTCGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig97145:890..1889-

>mRNA_H-elongata_contig97145.17084.1 ID=mRNA_H-elongata_contig97145.17084.1|Name=mRNA_H-elongata_contig97145.17084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig97145:890..1889- (Himanthalia elongata Himel1 dioecious)
ATGGAGGCTGCTTCGGATGGGCTCAAGAAGGAGCTCGAGCAAGGAATGCT
CCAGATGGAGGCTGCTTCGGATGGGCTCAAGAAGGAGCTCGAGCAAGGAA
TGCTCCAGGAGCTGAGGAATATGGACGAAGAAGCCCTTCGCTTTCGAGTG
GCGCAGCTTTCAACCGAGCTTCAGGACAGGACGAAATGGGAGGCGCTCCG
GCTGATTGAGGGCATCAAACAAAAGGAGGCTGACGTCGCTCGCAAGGAGC
TGAGGAATATGGACGAAGAAGCCCTTCGCTTTCGAGTGGCGCAGCTTTCA
ACCGAGCTTCAGGACAGGACGAAATGGGAGGCGCTCCGGCTGATTGAGGG
CATCAAACAAAAGGAGGCTGACGTCGCTCGCAAG
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