mRNA_H-elongata_contig9708.17082.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9708.17082.1
Unique NamemRNA_H-elongata_contig9708.17082.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9708.17082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9708contigH-elongata_contig9708:4892..5888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size948
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9708.17082.1prot_H-elongata_contig9708.17082.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9708 5190..5712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931363.6280067-UTR-H-elongata_contig9708:4891..50821622931363.6280067-UTR-H-elongata_contig9708:4891..5082Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 4892..5082 -
1691679805.8515863-UTR-H-elongata_contig9708:4891..50821691679805.8515863-UTR-H-elongata_contig9708:4891..5082Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 4892..5082 -
1622931363.646283-UTR-H-elongata_contig9708:5106..51891622931363.646283-UTR-H-elongata_contig9708:5106..5189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 5107..5189 -
1691679805.8616784-UTR-H-elongata_contig9708:5106..51891691679805.8616784-UTR-H-elongata_contig9708:5106..5189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 5107..5189 -
1622931363.738919-UTR-H-elongata_contig9708:5712..58881622931363.738919-UTR-H-elongata_contig9708:5712..5888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 5713..5888 -
1691679805.902966-UTR-H-elongata_contig9708:5712..58881691679805.902966-UTR-H-elongata_contig9708:5712..5888Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 5713..5888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931363.6888614-CDS-H-elongata_contig9708:5189..53051622931363.6888614-CDS-H-elongata_contig9708:5189..5305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 5190..5305 -
1691679805.8746297-CDS-H-elongata_contig9708:5189..53051691679805.8746297-CDS-H-elongata_contig9708:5189..5305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 5190..5305 -
1622931363.7162154-CDS-H-elongata_contig9708:5330..57121622931363.7162154-CDS-H-elongata_contig9708:5330..5712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 5331..5712 -
1691679805.8909302-CDS-H-elongata_contig9708:5330..57121691679805.8909302-CDS-H-elongata_contig9708:5330..5712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 5331..5712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9708.17082.1

>prot_H-elongata_contig9708.17082.1 ID=prot_H-elongata_contig9708.17082.1|Name=mRNA_H-elongata_contig9708.17082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MRSRRRTRTESTSSEEGFTWGLPLASSRSPSPLAVRPLPGRREEESSDGG
VVAVAGARKRYPYRQRNRPRVARTLVAEAKINNAASGSSSVVEVVRASPQ
VDTGSEEFTGWLMPLACSTSPRLRRKRRVKNLTPIPTSNRRELNRFYHHR
RDRRRKRGCRYLGRS*
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mRNA from alignment at H-elongata_contig9708:4892..5888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9708.17082.1 ID=mRNA_H-elongata_contig9708.17082.1|Name=mRNA_H-elongata_contig9708.17082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=997bp|location=Sequence derived from alignment at H-elongata_contig9708:4892..5888- (Himanthalia elongata Himel1 dioecious)
GCGCTGGAGCCGGTGCTGGCTCTGGACTAGCACCCGTCCCTGGATCGAGA
TTCTCTTCGCCACTGCTGCAAAGGCCGCCTTCCCAAACCGCTCCTTGCCA
CCGTGAATCTGACTCATCCGATGGCATCATTGCTGTAGAGCCTGTTCAAC
CGCTTCCCAGCACAAGGGAATGGAGGATGAGGAGTCGAAGAAGGACAAGG
ACGGAAAGCACAAGCAGCGAGGAGGGTTTTACGTGGGGGCTTCCATTGGC
CTCCTCAAGGTCGCCCTCGCCGCTAGCGGTCCGTCCACTCCCCGGTCGAC
GGGAGGAAGAATCCTCCGACGGCGGCGTTGTTGCTGTCGCCGGTGCTAGA
AAACGATACCCATATAGACAGCGAAACCGACCGCGAGTGGCACGAACGCT
CGTTGCAGAAGCGAAAATAAATAATGCCGCCTCGGGATCATCGTCGGTGG
TGGAGGTGGTAAGGGCGTCGCCTCAGGTGGACACCGGCAGTGAAGAATTC
ACCGGGTGGCTAATGCCTCTCGCCTGCTCCACGTCGCCCCGTCTGAGGAG
GAAGAGGAGTGGTGCCCTTGTTTCCAGCCCCAGGGGTAAAAAATCTGACT
CCGATTCCTACGTCGAATCGTCGAGAGTTGAATCGCTTCTACCACCATCG
TCGCGATCGCAGACGCAAACGCGGTTGTCGCTACCTGGGCCGGAGCTGAA
GACAAGCGTGTCGTCGAGAAAGGCACGCCGACAACGGGAGTGCGAGGGGG
TAACACGGCGCCGAGGTGGCGAGTCGATTTCGACGGAGCCGAGCGCTCCT
CAGTTGGAACCTCTATCTTACCGCAGCGTAGCCGCTACCTCATCGAGTGC
CTTCAGCGATGAAGGCAGCGGCGGCGGTGACGATAATTATGAAGGTGTCG
GTCGGAACTTCGATGGCGGCTACCGCGGGCAAGATAGGGCACATCCAAGC
GCACAGCAACCGCGCTCGCGATCGAAGGATTCGTTGGGGGACGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig9708:4892..5888-

>mRNA_H-elongata_contig9708.17082.1 ID=mRNA_H-elongata_contig9708.17082.1|Name=mRNA_H-elongata_contig9708.17082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig9708:4892..5888- (Himanthalia elongata Himel1 dioecious)
ATGAGGAGTCGAAGAAGGACAAGGACGGAAAGCACAAGCAGCGAGGAGGG
TTTTACGTGGGGGCTTCCATTGGCCTCCTCAAGGTCGCCCTCGCCGCTAG
CGGTCCGTCCACTCCCCGGTCGACGGGAGGAAGAATCCTCCGACGGCGGC
GTTGTTGCTGTCGCCGGTGCTAGAAAACGATACCCATATAGACAGCGAAA
CCGACCGCGAGTGGCACGAACGCTCGTTGCAGAAGCGAAAATAAATAATG
CCGCCTCGGGATCATCGTCGGTGGTGGAGGTGGTAAGGGCGTCGCCTCAG
GTGGACACCGGCAGTGAAGAATTCACCGGGTGGCTAATGCCTCTCGCCTG
CTCCACGTCGCCCCGTCTGAGGAGGAAGAGGAATGAGGAGTCGAAGAAGG
ACAAGGACGGAAAGCACAAGCAGCGAGGAGGGTTTTACGTGGGGGCTTCC
ATTGGCCTCCTCAAGGTCGCCCTCGCCGCTAGCGGTCCGTCCACTCCCCG
GTCGACGGGAGGAAGAATCCTCCGACGGCGGCGTTGTTGCTGTCGCCGGT
GCTAGAAAACGATACCCATATAGACAGCGAAACCGACCGCGAGTGGCACG
AACGCTCGTTGCAGAAGCGAAAATAAATAATGCCGCCTCGGGATCATCGT
CGGTGGTGGAGGTGGTAAGGGCGTCGCCTCAGGTGGACACCGGCAGTGAA
GAATTCACCGGGTGGCTAATGCCTCTCGCCTGCTCCACGTCGCCCCGTCT
GAGGAGGAAGAGGAGGGTAAAAAATCTGACTCCGATTCCTACGTCGAATC
GTCGAGAGTTGAATCGCTTCTACCACCATCGTCGCGATCGCAGACGCAAA
CGCGGTTGTCGCTACCTGGGCCGGAGCTGAGGGTAAAAAATCTGACTCCG
ATTCCTACGTCGAATCGTCGAGAGTTGAATCGCTTCTACCACCATCGTCG
CGATCGCAGACGCAAACGCGGTTGTCGCTACCTGGGCCGGAGCTGA
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