mRNA_H-elongata_contig9708.17080.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9708.17080.1
Unique NamemRNA_H-elongata_contig9708.17080.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig9708.17080.1 vs. uniprot
Match: D7FUQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-11
Identity = 55/106 (51.89%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 VRRRRAMLEVEEARARVRVFEQKGEARAKALLRSCAVVGGASIEAGAIRAAANAFEAGAFSGRFPGGVGGCVERSKAGGKRVVIGSGPLRPNRESWSEQRRGKAEE 318
            VRRRRAMLE +EARA++  F+++GE R +ALLR CA  G AS E   I AAA AFEA A  G   G     V+ +K      VI  G  RP  ESW+E RR KAEE
Sbjct:  891 VRRRRAMLEADEARAKIYAFKRRGELRTQALLRGCARGGAASEED--IAAAAEAFEAAAGVGAGXG-----VKVAKG----AVIAGGTPRPRFESWNELRRSKAEE 985
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BLAST of mRNA_H-elongata_contig9708.17080.1 vs. uniprot
Match: A0A6H5JRR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.180e-11
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:    1 VRRRRAMLEVEEARARVRVFEQKGEARAKALLRSCAVVGGASIEAGAIRAAANAFEAGAFSGRFPGGVGGCVERSKAGGKRVVIGSGPLRPNRESWSEQRRGKAEE 318
            VRRRRA+LE +EARA++  F+++GE R +ALLR CA  G AS E   I AAA AFE          G G  V+ +K     VVI  G  RP  ESW+E RR KAEE
Sbjct:  925 VRRRRALLEADEARAKIYAFKRRGELRTQALLRGCARGGAASEED--IAAAAEAFE---XXXXXXTGAGAGVKAAKG----VVIAGGTTRPRFESWNELRRSKAEE 1021
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9708.17080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUQ6_ECTSI1.200e-1151.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR9_9PHAE4.180e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9708contigH-elongata_contig9708:2686..3649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9708.17080.1prot_H-elongata_contig9708.17080.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9708 2686..3631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931363.7832026-CDS-H-elongata_contig9708:2685..27061622931363.7832026-CDS-H-elongata_contig9708:2685..2706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 2686..2706 -
1691679805.9119864-CDS-H-elongata_contig9708:2685..27061691679805.9119864-CDS-H-elongata_contig9708:2685..2706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 2686..2706 -
1622931363.7994611-CDS-H-elongata_contig9708:3352..36311622931363.7994611-CDS-H-elongata_contig9708:3352..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 3353..3631 -
1691679805.923468-CDS-H-elongata_contig9708:3352..36311691679805.923468-CDS-H-elongata_contig9708:3352..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9708 3353..3631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931363.8294568-UTR-H-elongata_contig9708:3631..36491622931363.8294568-UTR-H-elongata_contig9708:3631..3649Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 3632..3649 -
1691679805.931667-UTR-H-elongata_contig9708:3631..36491691679805.931667-UTR-H-elongata_contig9708:3631..3649Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig9708 3632..3649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9708.17080.1

>prot_H-elongata_contig9708.17080.1 ID=prot_H-elongata_contig9708.17080.1|Name=mRNA_H-elongata_contig9708.17080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MLEVEEARARVRVFEQKGEARAKALLRSCAVVGGASIEAGAIRAAANAFE
AGAFSGRFPGGVGGCVERSKAGGKRVVIGSGPLRPNRESWSEQRRGKAEE
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mRNA from alignment at H-elongata_contig9708:2686..3649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9708.17080.1 ID=mRNA_H-elongata_contig9708.17080.1|Name=mRNA_H-elongata_contig9708.17080.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=964bp|location=Sequence derived from alignment at H-elongata_contig9708:2686..3649- (Himanthalia elongata Himel1 dioecious)
GTCCGCCGGCGGCGCGCGATGCTCGAGGTCGAAGAGGCTCGCGCGAGGGT
GCGCGTCTTTGAGCAGAAGGGAGAGGCGCGGGCCAAGGCCCTCCTGCGTT
CCTGCGCCGTCGTCGGGGGAGCCTCGATCGAGGCGGGCGCGATCCGGGCG
GCCGCCAACGCCTTCGAAGCGGGGGCGTTCAGCGGGCGTTTTCCGGGCGG
AGTTGGGGGGTGCGTGGAGAGATCAAAGGCCGGGGGAAAGCGAGTCGTGA
TTGGCAGCGGACCTCTTCGGCCGAACCGGGAGTCGTGGAGCGAGCAGGTG
AGAGAGAGAGAGGCGAACTGGTTACTCCAGCCGGGTCCGGTTCGGTCCGT
ACCGGTCTCCGCGTTTCCCTTTTAGCATATAGTTTCGGGTATAATTGATG
TCCGCGTTAAGATGCGCTAGAAAAGCGAGTCGGTTTTCGAGAAATTTACT
GAGGGAGAGAGGGGGCGCCTCCAGCACCGACACCGGGCCACTCTATTTTC
TGTGTCTTTTTTGAGTAAAATAGGGTGTTTATGTGGGTGTGGGTGTCTCC
CCATCGCAAGTATATATCATGACGTCACTTACCGAGAGTAGTCGTCTCGG
TTGTAACCGACTCTGTAGATTTCGATGGAATGTGTCGGGAGAGAGGGATG
AGGGAAGAAAGGGTCCTTGGCCTCTCCTGATCCTCTCTTGCAATGAAAAC
CATTCTTGTCAACATCCCTAGTGTTTGCCGGCGTGCATCATTCGTACCAT
TTTTCGAATTTACTTAGCTCCCTTCCTTATCAGTTGTACGTCTCCGTTGA
AGATCGTAATTACCACATTCACACGCACATGACTCACTTCCCCCCCTTTT
ACTCCCTTTTTCTACCCCGTTAATGATGCCGTTCTGCCGCGTCAACCAAT
TGCCCACTCCCGTCCCTCCCCTCCCGTGGACAAAATAAAACAGCGTCGGG
GAAAGGCAGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig9708:2686..3649-

>mRNA_H-elongata_contig9708.17080.1 ID=mRNA_H-elongata_contig9708.17080.1|Name=mRNA_H-elongata_contig9708.17080.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig9708:2686..3649- (Himanthalia elongata Himel1 dioecious)
ATGCTCGAGGTCGAAGAGGCTCGCGCGAGGGTGCGCGTCTTTGAGCAGAA
GGGAGAGGCGCGGGCCAAGGCCCTCCTGCGTTCCTGCGCCGTCGTCGGGG
GAGCCTCGATCGAGGCGGGCGCGATCCGGGCGGCCGCCAACGCCTTCGAA
GCGGGGGCGTTCAGCGGGCGTTTTCCGGGCGGAGTTGGGGGGTGCGTGGA
GAGATCAAAGGCCGGGGGAAAGCGAGTCGTGATTGGCAGCGGACCTCTTC
GGCCGAACCGGGAGTCGTGGAGCGAGCAGATGCTCGAGGTCGAAGAGGCT
CGCGCGAGGGTGCGCGTCTTTGAGCAGAAGGGAGAGGCGCGGGCCAAGGC
CCTCCTGCGTTCCTGCGCCGTCGTCGGGGGAGCCTCGATCGAGGCGGGCG
CGATCCGGGCGGCCGCCAACGCCTTCGAAGCGGGGGCGTTCAGCGGGCGT
TTTCCGGGCGGAGTTGGGGGGTGCGTGGAGAGATCAAAGGCCGGGGGAAA
GCGAGTCGTGATTGGCAGCGGACCTCTTCGGCCGAACCGGGAGTCGTGGA
GCGAGCAGCGTCGGGGAAAGGCAGAAGAGCGTCGGGGAAAGGCAGAAGAG
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