mRNA_H-elongata_contig97007.17074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97007.17074.1
Unique NamemRNA_H-elongata_contig97007.17074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: D7FJA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJA2_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 7.320e-54
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GGASVAFP+MTLAFGI P+VARDFSFMIQSAGMTAAAATI IMQVQVEM+S+++AT+GGV G+ILGL E+AP LEPAYSKM FV TWAAFACSLFWLNRL GRRVF SIP
Sbjct:   99 EGGASVAFPIMTLAFGIAPIVARDFSFMIQSAGMTAAAATIVIMQVQVEMHSLLWATVGGVAGIILGLEEVAPRLEPAYSKMFFVSTWAAFACSLFWLNRLMGRRVFLSIP 209          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: A0A7S2UZR2_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZR2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.700e-39
Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GGASVAFPVMTLA GI P VARDFSFMIQS GMTAAA TI  M+V++EM+S++Y TIGG+ G+I GL  +AP L P YSKM FV  W +FA SL+ LNRLHGR+V++ IP
Sbjct:   55 EGGASVAFPVMTLALGIAPPVARDFSFMIQSCGMTAAAFTIFWMRVKIEMHSLIYCTIGGLAGIIFGLEYVAPELTPPYSKMYFVVIWFSFAFSLYNLNRLHGRKVYDEIP 165          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: A0A7S2SVF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.710e-39
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVF 321
            +GGA+VAFPVMTL FGILP+VARDFSFMIQS GMTAA+ TI  M V VE  ++ + TIGG+ G+I GL ++AP LEP+YSKM FV  W AFA SL+WLNR+  R+V+
Sbjct:   24 EGGAAVAFPVMTLIFGILPIVARDFSFMIQSVGMTAASLTILWMGVLVEWKALCFVTIGGIGGIIYGLEKVAPQLEPSYSKMYFVVIWGAFAASLYWLNRIRKRKVY 130          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: A0A7S3XM94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM94_HETAK)

HSP 1 Score: 136 bits (342), Expect = 4.900e-36
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GGASVAFPVMTLAFGI P +ARDFSFMIQS GM AA  TI  M+VQVE +S++Y ++GG  G++LGL  +AP L P  SKM FV  W AFA SL+ LNRL+GRRV+  +P
Sbjct:  107 EGGASVAFPVMTLAFGIKPAIARDFSFMIQSCGMVAAGFTILAMRVQVEYHSLLYCSLGGFLGMVLGLEYVAPSLTPPESKMYFVVIWFAFAFSLYQLNRLYGRRVYGMVP 217          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: F0Y040_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y040_AURAN)

HSP 1 Score: 132 bits (333), Expect = 1.020e-34
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVF 321
            +GGASVAFPVMTLA  + P VA+ FS+MIQS GMTAAA  I  MQV+VE  SI Y ++GGV GLI GL EIAP+L P Y+KM FV  W +FA SL++LNR+HGR+V+
Sbjct:   74 EGGASVAFPVMTLAMDVKPHVAKQFSYMIQSVGMTAAAFVILYMQVRVEWKSITYCSVGGVVGLIYGLEEIAPVLTPPYAKMYFVVIWGSFAASLYYLNRIHGRKVY 180          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: F0Y077_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y077_AURAN)

HSP 1 Score: 132 bits (331), Expect = 4.460e-34
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVF 321
            +GGASVAFPVMTLA  + P VA+ FS+MIQS GMTAAA  I  MQV+VE  SI Y +IGG+ GLI GL EIAP+L P Y+KM FV  W +FA SL++LNR+HGR+V+
Sbjct:  139 EGGASVAFPVMTLAMDVKPHVAKQFSYMIQSVGMTAAAFVILYMQVRVEWKSITYCSIGGMVGLIYGLEEIAPVLTPPYAKMYFVVIWGSFAASLYYLNRIHGRKVY 245          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: A0A1S3JIM9_LINUN (uncharacterized protein LOC106173617 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JIM9_LINUN)

HSP 1 Score: 130 bits (328), Expect = 8.560e-34
Identity = 69/111 (62.16%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GG +VAFPVMTLAFGI P +ARDFS MIQSAGMTAAA TI  M+VQ+E +SI++ ++GG  G I+GL  I P L P   KM FVC W +FA  LFWLNR H RR F  IP
Sbjct:  138 EGGGAVAFPVMTLAFGIKPSIARDFSLMIQSAGMTAAAFTIIWMKVQLEWHSIIFCSLGGGIGTIVGLEFIDPRLTPQQKKMGFVCIWFSFAFVLFWLNRYHKRRTFPKIP 248          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: UPI000A2A4B0E (uncharacterized protein LOC110244058 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4B0E)

HSP 1 Score: 129 bits (324), Expect = 1.710e-33
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GGASVA+P+MTLAF I P VARDFSFMIQS GMTAAA TI  M+V  E +S+V+ ++GGV G+I GL  I PLL P + KM FVC W  FA +LF LNR   R+ ++ IP
Sbjct:  107 EGGASVAYPIMTLAFNIKPSVARDFSFMIQSCGMTAAAFTIIFMRVHTEQFSLVFCSLGGVIGMIFGLEVIDPLLTPPFKKMGFVCIWFTFAFALFLLNRYRDRKTYQRIP 217          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: UPI000C054A02 (uncharacterized protein LOC111319879 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C054A02)

HSP 1 Score: 124 bits (312), Expect = 2.710e-32
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GG +VAFPVMTLAF I P VARDFS MIQS GMTAAA TI  M+VQ+E +S+ + ++GG+ G+I+GL  I P L P   KM FVC W AFA +LF LNR H R+ + +IP
Sbjct:    4 EGGGAVAFPVMTLAFSIAPEVARDFSLMIQSCGMTAAAFTIFWMRVQLEWHSVTFCSLGGIFGMIIGLEFIDPQLTPPQKKMGFVCMWFAFAFALFLLNRYHKRKTYTTIP 114          
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Match: A0A2B4RQ42_STYPI (Uncharacterized protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQ42_STYPI)

HSP 1 Score: 126 bits (316), Expect = 3.020e-32
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 KGGASVAFPVMTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGGVCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESIP 333
            +GG +VAFP+MTLAF I P VARDFS MIQS GMTAAA TI  M VQ+E +SI   +IGG+ G+I+GL  I P L PA  KM FVC W AFA +LF LNR H R+ + +IP
Sbjct:   97 EGGGTVAFPIMTLAFSIAPEVARDFSLMIQSCGMTAAAFTILWMHVQLEWHSITLCSIGGIFGMIIGLEFIDPQLTPAQKKMGFVCVWFAFAFALFLLNRYHKRKTYTTIP 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97007.17074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJA2_ECTSI7.320e-5482.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UZR2_9STRA1.700e-3966.67Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2SVF7_9STRA3.710e-3964.49Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3XM94_HETAK4.900e-3663.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y040_AURAN1.020e-3463.55Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0Y077_AURAN4.460e-3463.55Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1S3JIM9_LINUN8.560e-3462.16uncharacterized protein LOC106173617 n=1 Tax=Lingu... [more]
UPI000A2A4B0E1.710e-3359.46uncharacterized protein LOC110244058 n=1 Tax=Exaip... [more]
UPI000C054A022.710e-3258.56uncharacterized protein LOC111319879 n=1 Tax=Stylo... [more]
A0A2B4RQ42_STYPI3.020e-3260.36Uncharacterized protein n=2 Tax=Stylophora pistill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97007contigH-elongata_contig97007:1753..2382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue1e-37
Seed eggNOG ortholog2880.D7FJA2
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs2CN7N@1,2QUD0@2759
Ec32 ortholog descriptionTransmembrane protein TauE like
Ec32 orthologEc-12_008300.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size333
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97007.17074.1prot_H-elongata_contig97007.17074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97007 1783..2382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931363.061998-UTR-H-elongata_contig97007:1752..17821622931363.061998-UTR-H-elongata_contig97007:1752..1782Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97007 1753..1782 +
1691679805.6830997-UTR-H-elongata_contig97007:1752..17821691679805.6830997-UTR-H-elongata_contig97007:1752..1782Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig97007 1753..1782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931363.0864656-CDS-H-elongata_contig97007:1782..19621622931363.0864656-CDS-H-elongata_contig97007:1782..1962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97007 1783..1962 +
1691679805.6929994-CDS-H-elongata_contig97007:1782..19621691679805.6929994-CDS-H-elongata_contig97007:1782..1962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97007 1783..1962 +
1622931363.1054168-CDS-H-elongata_contig97007:2259..23821622931363.1054168-CDS-H-elongata_contig97007:2259..2382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97007 2260..2382 +
1691679805.705862-CDS-H-elongata_contig97007:2259..23821691679805.705862-CDS-H-elongata_contig97007:2259..2382Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97007 2260..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97007.17074.1

>prot_H-elongata_contig97007.17074.1 ID=prot_H-elongata_contig97007.17074.1|Name=mRNA_H-elongata_contig97007.17074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MTLAFGILPVVARDFSFMIQSAGMTAAAATIAIMQVQVEMYSIVYATIGG
VCGLILGLAEIAPLLEPAYSKMIFVCTWAAFACSLFWLNRLHGRRVFESI
P
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mRNA from alignment at H-elongata_contig97007:1753..2382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97007.17074.1 ID=mRNA_H-elongata_contig97007.17074.1|Name=mRNA_H-elongata_contig97007.17074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at H-elongata_contig97007:1753..2382+ (Himanthalia elongata Himel1 dioecious)
AAGGGCGGCGCTTCGGTGGCATTCCCTGTGATGACTCTCGCGTTTGGCAT CCTACCTGTCGTTGCTCGGGACTTCAGCTTCATGATCCAAAGCGCCGGTA TGACAGCCGCTGCTGCGACAATAGCGATAATGCAGGTTCAAGTGGAAATG TACTCAATTGTTTATGCCACCATTGGAGGCGTATGTGGACTGATCCTGGG TCTCGCGGAGGTGAGCCTCTAGCCTCCTCATGTTTGGCTTCAGCGACTAC CCTCCTGTTATGTATACTGCCTGTACTGTATTGTACTGAACTGTACTGTA CCGTATTGTATTGTACTGTACTGTACTGAACTGTATTGCGCTACAGCGAG TTAAGCTCTACTTAAAAGCTCCAAGTACTCAATAATCGCACGGTGCCACG CGGCACGATGAATGGAGAGAAGCTATGCTATTGGCTCTCGGCTTCACTTG CACTACACCATGCCGTTGCTCGCTGCTTTTCGTGGGATTCTCCCCGCATT GTATCAGATCGCCCCTCTGCTGGAGCCAGCCTATTCCAAAATGATTTTCG TCTGCACCTGGGCGGCGTTTGCGTGTTCACTGTTCTGGCTTAACCGCCTC CACGGTCGGCGCGTATTCGAGAGCATTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig97007:1753..2382+

>mRNA_H-elongata_contig97007.17074.1 ID=mRNA_H-elongata_contig97007.17074.1|Name=mRNA_H-elongata_contig97007.17074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig97007:1753..2382+ (Himanthalia elongata Himel1 dioecious)
ATGACTCTCGCGTTTGGCATCCTACCTGTCGTTGCTCGGGACTTCAGCTT
CATGATCCAAAGCGCCGGTATGACAGCCGCTGCTGCGACAATAGCGATAA
TGCAGGTTCAAGTGGAAATGTACTCAATTGTTTATGCCACCATTGGAGGC
GTATGTGGACTGATCCTGGGTCTCGCGGAGATGACTCTCGCGTTTGGCAT
CCTACCTGTCGTTGCTCGGGACTTCAGCTTCATGATCCAAAGCGCCGGTA
TGACAGCCGCTGCTGCGACAATAGCGATAATGCAGGTTCAAGTGGAAATG
TACTCAATTGTTTATGCCACCATTGGAGGCGTATGTGGACTGATCCTGGG
TCTCGCGGAGATCGCCCCTCTGCTGGAGCCAGCCTATTCCAAAATGATTT
TCGTCTGCACCTGGGCGGCGTTTGCGTGTTCACTGTTCTGGCTTAACCGC
CTCCACGGTCGGCGCGTATTCGAGAGCATTCCCATCGCCCCTCTGCTGGA
GCCAGCCTATTCCAAAATGATTTTCGTCTGCACCTGGGCGGCGTTTGCGT
GTTCACTGTTCTGGCTTAACCGCCTCCACGGTCGGCGCGTATTCGAGAGC
ATTCCC
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