mRNA_H-elongata_contig96847.17060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96847.17060.1
Unique NamemRNA_H-elongata_contig96847.17060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96847.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96847contigH-elongata_contig96847:2019..2391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931360.9341555-UTR-H-elongata_contig96847:2018..20431622931360.9341555-UTR-H-elongata_contig96847:2018..2043Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96847 2019..2043 +
1691679805.0788302-UTR-H-elongata_contig96847:2018..20431691679805.0788302-UTR-H-elongata_contig96847:2018..2043Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96847 2019..2043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931360.954721-CDS-H-elongata_contig96847:2043..23911622931360.954721-CDS-H-elongata_contig96847:2043..2391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96847 2044..2391 +
1691679805.0897095-CDS-H-elongata_contig96847:2043..23911691679805.0897095-CDS-H-elongata_contig96847:2043..2391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96847 2044..2391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96847.17060.1prot_H-elongata_contig96847.17060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96847 2044..2391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96847.17060.1

>prot_H-elongata_contig96847.17060.1 ID=prot_H-elongata_contig96847.17060.1|Name=mRNA_H-elongata_contig96847.17060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MQMVIDIGYLSEAWRTLSKIVADSEESSYNKVLREYESLKIGTNERVAEY
FVRVNVILKRVTHHNVTAPARDVSNRVLSGLTPRFPDEARVFALKGEFDL
SDLEAGITRAESFKLE
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mRNA from alignment at H-elongata_contig96847:2019..2391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96847.17060.1 ID=mRNA_H-elongata_contig96847.17060.1|Name=mRNA_H-elongata_contig96847.17060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=373bp|location=Sequence derived from alignment at H-elongata_contig96847:2019..2391+ (Himanthalia elongata Himel1 dioecious)
AGCGCTAGAAAGAGAGAAGGACTACATGCAAATGGTAATTGACATAGGTT
ACCTTTCAGAAGCGTGGCGAACACTAAGCAAGATTGTAGCTGACTCAGAG
GAGTCATCGTATAACAAGGTACTACGCGAATATGAATCACTAAAAATAGG
AACCAATGAACGTGTTGCTGAATACTTTGTACGTGTAAATGTGATTTTGA
AAAGGGTAACTCACCACAACGTGACAGCACCCGCCCGTGATGTCAGCAAT
AGAGTACTAAGTGGCTTAACTCCCCGCTTCCCTGATGAAGCACGTGTGTT
TGCACTAAAGGGTGAATTTGACTTAAGTGACCTGGAAGCTGGGATTACCC
GGGCGGAGAGCTTCAAGTTGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig96847:2019..2391+

>mRNA_H-elongata_contig96847.17060.1 ID=mRNA_H-elongata_contig96847.17060.1|Name=mRNA_H-elongata_contig96847.17060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig96847:2019..2391+ (Himanthalia elongata Himel1 dioecious)
ATGCAAATGGTAATTGACATAGGTTACCTTTCAGAAGCGTGGCGAACACT
AAGCAAGATTGTAGCTGACTCAGAGGAGTCATCGTATAACAAGGTACTAC
GCGAATATGAATCACTAAAAATAGGAACCAATGAACGTGTTGCTGAATAC
TTTGTACGTGTAAATGTGATTTTGAAAAGGGTAACTCACCACAACGTGAC
AGCACCCGCCCGTGATGTCAGCAATAGAGTACTAAGTGGCTTAACTCCCC
GCTTCCCTGATGAAGCACGTGTGTTTGCACTAAAGGGTGAATTTGACTTA
AGTGACCTGGAAGCTGGGATTACCCGGGCGGAGAGCTTCAAGTTGGAAAT
GCAAATGGTAATTGACATAGGTTACCTTTCAGAAGCGTGGCGAACACTAA
GCAAGATTGTAGCTGACTCAGAGGAGTCATCGTATAACAAGGTACTACGC
GAATATGAATCACTAAAAATAGGAACCAATGAACGTGTTGCTGAATACTT
TGTACGTGTAAATGTGATTTTGAAAAGGGTAACTCACCACAACGTGACAG
CACCCGCCCGTGATGTCAGCAATAGAGTACTAAGTGGCTTAACTCCCCGC
TTCCCTGATGAAGCACGTGTGTTTGCACTAAAGGGTGAATTTGACTTAAG
TGACCTGGAAGCTGGGATTACCCGGGCGGAGAGCTTCAAGTTGGAA
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