mRNA_H-elongata_contig96665.17048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96665.17048.1
Unique NamemRNA_H-elongata_contig96665.17048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig96665.17048.1 vs. uniprot
Match: D7FQR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR2_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 8.390e-52
Identity = 85/119 (71.43%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    1 SFPSTWTAKSSIQLVAPKQSDISDRSLFGRARLAAFDRDGYARDKGLRRPLYYTSGFLTCTRCNGLTFIDASALRSILELNIYHEFNGVRPESLPPCAGCGETSGLRVGAHDFLSLIEG 357
            SFPSTW+  SSIQL+ PK SD +DRSLF RARLA FD  GY   +GLRRPL+Y SG+L+CT+CNG+TFIDASALR+ILEL    +F  VRPE+LPPC GCGET+GLRVGAHDFLSLI+G
Sbjct:   68 SFPSTWSPGSSIQLIPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTQCNGMTFIDASALRTILELKSLVDFGKVRPENLPPCVGCGETAGLRVGAHDFLSLIQG 186
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BLAST of mRNA_H-elongata_contig96665.17048.1 vs. uniprot
Match: A0A836CFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.000e-14
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   34 IQLVAPKQSDISDRSLFGRARLAAFDRDGYARDKGLRRPLYYTSGFLTCTRCNGLTFIDASALRSILEL 240
            +QLV P+Q+D +D+SL  RA   AFD  G+A  +GLRR L+Y SGF+TC  CN +TF+DA+ALR+ + L
Sbjct:   16 VQLVPPQQNDCTDQSLPRRAE-GAFDACGFAERRGLRRSLFYVSGFVTCAACNAVTFVDAAALRTAMHL 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96665.17048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQR2_ECTSI8.390e-5271.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFY4_9STRA7.000e-1453.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96665contigH-elongata_contig96665:437..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D7FQR2
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2A3HT@1,2RY5B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931359.6615207-CDS-H-elongata_contig96665:436..7961622931359.6615207-CDS-H-elongata_contig96665:436..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96665 437..796 -
1691679804.5653186-CDS-H-elongata_contig96665:436..7961691679804.5653186-CDS-H-elongata_contig96665:436..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96665 437..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96665.17048.1prot_H-elongata_contig96665.17048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96665 437..796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96665.17048.1

>prot_H-elongata_contig96665.17048.1 ID=prot_H-elongata_contig96665.17048.1|Name=mRNA_H-elongata_contig96665.17048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
SFPSTWTAKSSIQLVAPKQSDISDRSLFGRARLAAFDRDGYARDKGLRRP
LYYTSGFLTCTRCNGLTFIDASALRSILELNIYHEFNGVRPESLPPCAGC
GETSGLRVGAHDFLSLIEG*
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mRNA from alignment at H-elongata_contig96665:437..796-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96665.17048.1 ID=mRNA_H-elongata_contig96665.17048.1|Name=mRNA_H-elongata_contig96665.17048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig96665:437..796- (Himanthalia elongata Himel1 dioecious)
TCCTTCCCATCCACGTGGACAGCCAAAAGCAGCATCCAGCTCGTGGCACC
GAAGCAGAGTGACATATCGGATAGAAGCCTTTTTGGGAGAGCTCGATTAG
CTGCGTTTGATCGCGATGGCTACGCACGCGACAAGGGCCTCCGACGACCG
CTGTATTACACAAGCGGATTCCTTACATGTACTAGATGCAACGGGCTCAC
GTTCATTGATGCGTCAGCCCTGCGAAGCATTCTGGAGTTGAATATTTATC
ATGAATTTAACGGAGTTCGTCCCGAAAGCCTGCCTCCATGTGCTGGGTGT
GGCGAGACATCGGGCTTGAGGGTCGGGGCCCATGACTTTTTGAGCCTCAT
CGAAGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig96665:437..796-

>mRNA_H-elongata_contig96665.17048.1 ID=mRNA_H-elongata_contig96665.17048.1|Name=mRNA_H-elongata_contig96665.17048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig96665:437..796- (Himanthalia elongata Himel1 dioecious)
TCCTTCCCATCCACGTGGACAGCCAAAAGCAGCATCCAGCTCGTGGCACC
GAAGCAGAGTGACATATCGGATAGAAGCCTTTTTGGGAGAGCTCGATTAG
CTGCGTTTGATCGCGATGGCTACGCACGCGACAAGGGCCTCCGACGACCG
CTGTATTACACAAGCGGATTCCTTACATGTACTAGATGCAACGGGCTCAC
GTTCATTGATGCGTCAGCCCTGCGAAGCATTCTGGAGTTGAATATTTATC
ATGAATTTAACGGAGTTCGTCCCGAAAGCCTGCCTCCATGTGCTGGGTGT
GGCGAGACATCGGGCTTGAGGGTCGGGGCCCATGACTTTTTGAGCCTCAT
CGAAGGTTAGTCCTTCCCATCCACGTGGACAGCCAAAAGCAGCATCCAGC
TCGTGGCACCGAAGCAGAGTGACATATCGGATAGAAGCCTTTTTGGGAGA
GCTCGATTAGCTGCGTTTGATCGCGATGGCTACGCACGCGACAAGGGCCT
CCGACGACCGCTGTATTACACAAGCGGATTCCTTACATGTACTAGATGCA
ACGGGCTCACGTTCATTGATGCGTCAGCCCTGCGAAGCATTCTGGAGTTG
AATATTTATCATGAATTTAACGGAGTTCGTCCCGAAAGCCTGCCTCCATG
TGCTGGGTGTGGCGAGACATCGGGCTTGAGGGTCGGGGCCCATGACTTTT
TGAGCCTCATCGAAGGTTAG
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