mRNA_H-elongata_contig9663.17046.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: D8LT83_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT83_ECTSI) HSP 1 Score: 280 bits (716), Expect = 5.800e-92 Identity = 143/199 (71.86%), Postives = 163/199 (81.91%), Query Frame = 1
Query: 16 FSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
F+ RSAIRFTTFER+S LQEG G++ +NAL AGT+AGA+ES+TCLTPLQNIQI+M Q + RGF +AL EI RREG R GFFSGLWPTVVKG +NNCIRFGLYNE A +RR+ GD+PDE L AG VF IGAAAGAVSAVVTHPIDTVKSNLQGLSA +YSGSLDCAR+I+ SSGV GLFRG++PRICR
Sbjct: 91 FALPRSAIRFTTFERVSEWLQEGQGKLDAVNALAAGTVAGAIESATCLTPLQNIQIKMMQ---------MDRGFVYALGEILRREGLRNGFFSGLWPTVVKGAVNNCIRFGLYNETAAALRRSCGDSPDEALAAGAVFGIGAAAGAVSAVVTHPIDTVKSNLQGLSAGKYSGSLDCARKIIASSGVSGLFRGLSPRICR 280
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A7S0CXV1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXV1_9EUKA) HSP 1 Score: 145 bits (366), Expect = 2.270e-39 Identity = 84/203 (41.38%), Postives = 118/203 (58.13%), Query Frame = 1
Query: 13 VFSRERSAIRFTTFERISSL--LQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGS-LDCARQIVISSGVIGLFRGVTPRICR 612
VF+ R A++F T+E ++ L++ + A++ G AG VE + TP+QN+ I+M D + ++R YR HA+ I R EGF GF+SG+ PTV K +NN IRF Y E + T G + + L G G +SAVVT PIDTVK+N+Q LSA RY S L C R+IV SG++G +RG+ PR+CR
Sbjct: 55 VFTLPRCALKFATYEWLTEKANLRQHSHSTQGLGAMLCGAGAGGVEWAVAGTPMQNVSIKMLHDSN-DGNSRKYRSMIHAVASIWREEGFIRGFYSGILPTVAKASVNNGIRFAAYGEICKIFSSTNGLSGSKGLSTVESMVAGFLTGLISAVVTQPIDTVKTNMQSLSADRYDRSILGCCREIVRQSGLVGFYRGLGPRLCR 256
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: W7T809_9STRA (Tricarboxylate transport mitochondrial-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T809_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.480e-34 Identity = 87/237 (36.71%), Postives = 128/237 (54.01%), Query Frame = 1
Query: 13 VFSRERSAIRFTTFERISSLL--------QEGD---GQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDG--DAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAG------------------------TVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
VF+ RSA+RF+T+E +S QEG+ G++ ++ AG+IAGAVE T TP+Q IQ++M D PR + GF A+ I R EG G ++GL PTV+KG +NNCIRF ++E + ++ + + D L A +GA +G +SA+ THPIDTVKSN+Q LSA +Y+ S +C I+ + G+ GL++G+ PR R
Sbjct: 60 VFAFPRSAVRFSTYEFVSQRFRETVSKESQEGELQNGKLDPYLSMAAGSIAGAVEFLTVGTPMQCIQVKMAHDAYSKVPR----FHGFVSAIVGIVRAEGLLKGLYAGLGPTVLKGAVNNCIRFSTFSELKYIYQKYKLNVADNRLTATFENFSTCPESDHFQAVHEAILNPLETMLLGATSGGLSAIATHPIDTVKSNMQSLSADKYTSSWNCFLSILRNQGLPGLYQGMAPRFVR 292
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A0M0JMT8_9EUKA (Tricarboxylate transport mitochondrial-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JMT8_9EUKA) HSP 1 Score: 130 bits (327), Expect = 2.180e-33 Identity = 83/207 (40.10%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 13 VFSRERSAIRFTTFERISSLLQEGD-----GQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGD--APDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
+F+ RSA+RF TF+ +S + + D GQ + A AG IAG VE++ C TP Q I I+MT D +PR Y+G HA+ + R +G GF++GL P V+KG + N IRF + +++ P PL G AGA+SAVV+ PIDTVK+N+ GL A R+ S C ++V + GV LF GV PR+ R
Sbjct: 74 LFAGPRSAVRFGTFDALSGVSRSRDLPAKFGQSTVDTA--AGFIAGIVEAALCQTPNQVISIKMTHDA-SPRGPNQYQGMVHAIGCMYRADGL-LGFYAGLGPAVLKGAVTNSIRFLGFGRLKRLIQGEPAPDGTPPPPLALWQAMLAGGTAGAISAVVSQPIDTVKANMMGLEAHRFRNSFSCLIELVRAGGVSCLFNGVAPRVVR 276
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A423WAC7_9PEZI (Uncharacterized protein n=4 Tax=Valsaceae TaxID=5117 RepID=A0A423WAC7_9PEZI) HSP 1 Score: 123 bits (308), Expect = 1.510e-30 Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query: 28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
++ IRF F++ SLLQ+ +G+V A +AG AG ES +TP ++I+ ++ D + + RGF HA+ I R G AGFF+G PT + N+ +RFG YN + AP E L F IGA AG ++ +VT P+DT+K+ +Q L A++ Y S CA I G++ + GV PR+ R
Sbjct: 85 KAGIRFVAFDQYKSLLQDAEGKVSGPRAALAGFAAGVTESLLAVTPTESIKTQLIDDRKSAKPR--MRGFLHAVPIIARERGI-AGFFAGFVPTTARQAANSAVRFGSYNFLKQAAQSYT--APGEKLSTPATFGIGAVAGLITVLVTQPLDTIKTRMQSLEAKKNYGNSFRCAALIFKEEGILTYWSGVLPRLAR 275
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A0G2FL47_9PEZI (Putative tricarboxylate transporter mitochondrial carrier protein n=3 Tax=Diaporthe TaxID=36922 RepID=A0A0G2FL47_9PEZI) HSP 1 Score: 123 bits (308), Expect = 1.710e-30 Identity = 76/196 (38.78%), Postives = 104/196 (53.06%), Query Frame = 1
Query: 28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
++ IRF F++ LL + DG+V A AG AG ES +TP ++I+ ++ D R RGF HA+ I R G AGFF+G PT + N+ +RFG YN + AP E L F IGA AG V+ +VT P+DT+K+ +Q L A+R Y SL CA I GV+ + GV PR+ R
Sbjct: 91 KAGIRFVAFDQYKRLLADADGKVSGPRAAAAGFAAGVTESLLAVTPTESIKTQLIDD--RKRANPRMRGFLHAVPIIARERGI-AGFFAGFVPTTARQAANSAVRFGSYNFLKQAAQSYA--APGEKLSTPATFGIGALAGLVTVLVTQPLDTIKTRMQSLEAKRDYGNSLRCAGMIFRQEGVLTFWSGVLPRLAR 281
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A8A3P753_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3P753_9HELO) HSP 1 Score: 122 bits (305), Expect = 4.010e-30 Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query: 28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
++ IRF F++ +LLQ+ DG++ +VAG AG ES +TP ++I+ + D + + +GF HA+ I R G R GFF G PT + N+ +RFG Y + + AP E LGA + F IG AG ++ VT P+DTVK+ +Q + ARR Y S+ CA I + GV+ + G PR+ R
Sbjct: 83 KAGIRFVAFDQYRALLQDADGKISGPRTVVAGFGAGVTESLLAVTPFESIKTTLIDDRKSAKPR--LKGFLHAVPIIARERGLR-GFFQGFVPTTARQSANSAVRFGSYTSLRQLAQSYA--APGEKLGALSTFGIGGLAGIITVYVTQPLDTVKTRMQSIEARRLYKNSVHCASLIARNEGVLTFWSGALPRLGR 273
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: R1D1S4_EMIHU (Mitochondrial citrate carrier n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D1S4_EMIHU) HSP 1 Score: 122 bits (307), Expect = 5.270e-30 Identity = 80/206 (38.83%), Postives = 106/206 (51.46%), Query Frame = 1
Query: 13 VFSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTI----AGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRG--DAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
+F RSA+RF TFE +++ Q G + A TI AG E++ C TP Q I I+M D +PR R Y G H + I R EG AG+F G+ P V KG N IRF + + + + G P PL G AGAVSAV T PIDTVK+N+ G+ RY + C ++V + G+ L GV PR+CR
Sbjct: 119 IFGGPRSAVRFGTFETLTAASQRR-GMHQRLGTPTADTINGFAAGMAEAALCQTPNQVIAIKMIHD-QSPRGPRQYEGLVHCVACIWRAEGV-AGYFQGVGPAVTKGAATNAIRFLGFGQLKRLAQGPAGADGTPPPPLATWQAMLCGGIAGAVSAVATQPIDTVKANMMGIDGGRYRSAFHCTAELVRAGGLRVLMNGVGPRVCR 321
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A0C3QFF7_9AGAM (Uncharacterized protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QFF7_9AGAM) HSP 1 Score: 120 bits (302), Expect = 8.810e-30 Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1
Query: 28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDA-PDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
++ +RF ++++ SLL + +G+V LVAG AG E+ +TP + I+ ++ D P +RG H I R EG +G + GL+P V++ G N+ +RF Y+ V+ G+A P + L +G F+IG AG ++ T P+D VK+ +Q L A++ Y S CA ++ +G++G ++G TPR+ R
Sbjct: 77 KAGVRFVSYDKYKSLLADSEGKVSAPRGLVAGLAAGMTEAVLAVTPSETIKTKLIDDSKRPNPR--FRGLIHGTTTIIREEGL-SGIYRGLFPVVLRQGANSAVRFTSYSTLKQFVQ---GNARPGQTLSSGITFAIGGLAGLITVYTTMPLDVVKTRMQSLEAKQLYKNSFHCAYKVFQENGILGFWKGTTPRLAR 267
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A7S4A3I2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3I2_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.700e-29 Identity = 81/201 (40.30%), Postives = 107/201 (53.23%), Query Frame = 1
Query: 16 FSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRG--FFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
F+ RSA+RF FE +S G L G AGA E++ C TP Q+IQI++ D + Y FF A I R G + F+ GL P V KG L NC+RF Y G++R + +E A F GA AGA+SAV++ P+DTVK+N+ GL Y+ SLDCAR IV + GV L+ G PR+ R
Sbjct: 79 FAGPRSAVRFAAFEFLSKDAPRTSGWDFL-----CGLGAGACEAALCQTPNQSIQIKLLHDASPAVVEKRYSHLPFFRACAAIGRHHGILS-FYDGLAPAVAKGALTNCVRFVGYK---GILRAS---GREENASAMESFGAGAVAGAISAVISQPVDTVKANMMGLDRGVYASSLDCARAIVKADGVRALWNGGGPRVVR 267 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9663.17046.1 >prot_H-elongata_contig9663.17046.1 ID=prot_H-elongata_contig9663.17046.1|Name=mRNA_H-elongata_contig9663.17046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp MFSSVFSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSback to top mRNA from alignment at H-elongata_contig9663:2386..3818+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9663.17046.1 ID=mRNA_H-elongata_contig9663.17046.1|Name=mRNA_H-elongata_contig9663.17046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1433bp|location=Sequence derived from alignment at H-elongata_contig9663:2386..3818+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9663:2386..3818+ >mRNA_H-elongata_contig9663.17046.1 ID=mRNA_H-elongata_contig9663.17046.1|Name=mRNA_H-elongata_contig9663.17046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig9663:2386..3818+ (Himanthalia elongata Himel1 dioecious)back to top |