mRNA_H-elongata_contig9663.17046.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9663.17046.1
Unique NamemRNA_H-elongata_contig9663.17046.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: D8LT83_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT83_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 5.800e-92
Identity = 143/199 (71.86%), Postives = 163/199 (81.91%), Query Frame = 1
Query:   16 FSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            F+  RSAIRFTTFER+S  LQEG G++  +NAL AGT+AGA+ES+TCLTPLQNIQI+M Q         + RGF +AL EI RREG R GFFSGLWPTVVKG +NNCIRFGLYNE A  +RR+ GD+PDE L AG VF IGAAAGAVSAVVTHPIDTVKSNLQGLSA +YSGSLDCAR+I+ SSGV GLFRG++PRICR
Sbjct:   91 FALPRSAIRFTTFERVSEWLQEGQGKLDAVNALAAGTVAGAIESATCLTPLQNIQIKMMQ---------MDRGFVYALGEILRREGLRNGFFSGLWPTVVKGAVNNCIRFGLYNETAAALRRSCGDSPDEALAAGAVFGIGAAAGAVSAVVTHPIDTVKSNLQGLSAGKYSGSLDCARKIIASSGVSGLFRGLSPRICR 280          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A7S0CXV1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXV1_9EUKA)

HSP 1 Score: 145 bits (366), Expect = 2.270e-39
Identity = 84/203 (41.38%), Postives = 118/203 (58.13%), Query Frame = 1
Query:   13 VFSRERSAIRFTTFERISSL--LQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGS-LDCARQIVISSGVIGLFRGVTPRICR 612
            VF+  R A++F T+E ++    L++       + A++ G  AG VE +   TP+QN+ I+M  D +   ++R YR   HA+  I R EGF  GF+SG+ PTV K  +NN IRF  Y E   +   T G +  + L        G   G +SAVVT PIDTVK+N+Q LSA RY  S L C R+IV  SG++G +RG+ PR+CR
Sbjct:   55 VFTLPRCALKFATYEWLTEKANLRQHSHSTQGLGAMLCGAGAGGVEWAVAGTPMQNVSIKMLHDSN-DGNSRKYRSMIHAVASIWREEGFIRGFYSGILPTVAKASVNNGIRFAAYGEICKIFSSTNGLSGSKGLSTVESMVAGFLTGLISAVVTQPIDTVKTNMQSLSADRYDRSILGCCREIVRQSGLVGFYRGLGPRLCR 256          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: W7T809_9STRA (Tricarboxylate transport mitochondrial-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T809_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.480e-34
Identity = 87/237 (36.71%), Postives = 128/237 (54.01%), Query Frame = 1
Query:   13 VFSRERSAIRFTTFERISSLL--------QEGD---GQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDG--DAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAG------------------------TVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            VF+  RSA+RF+T+E +S           QEG+   G++    ++ AG+IAGAVE  T  TP+Q IQ++M  D     PR    + GF  A+  I R EG   G ++GL PTV+KG +NNCIRF  ++E   + ++ + +  D  L A                             +GA +G +SA+ THPIDTVKSN+Q LSA +Y+ S +C   I+ + G+ GL++G+ PR  R
Sbjct:   60 VFAFPRSAVRFSTYEFVSQRFRETVSKESQEGELQNGKLDPYLSMAAGSIAGAVEFLTVGTPMQCIQVKMAHDAYSKVPR----FHGFVSAIVGIVRAEGLLKGLYAGLGPTVLKGAVNNCIRFSTFSELKYIYQKYKLNVADNRLTATFENFSTCPESDHFQAVHEAILNPLETMLLGATSGGLSAIATHPIDTVKSNMQSLSADKYTSSWNCFLSILRNQGLPGLYQGMAPRFVR 292          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A0M0JMT8_9EUKA (Tricarboxylate transport mitochondrial-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JMT8_9EUKA)

HSP 1 Score: 130 bits (327), Expect = 2.180e-33
Identity = 83/207 (40.10%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   13 VFSRERSAIRFTTFERISSLLQEGD-----GQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGD--APDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            +F+  RSA+RF TF+ +S + +  D     GQ  +  A  AG IAG VE++ C TP Q I I+MT D  +PR    Y+G  HA+  + R +G   GF++GL P V+KG + N IRF  +     +++        P  PL        G  AGA+SAVV+ PIDTVK+N+ GL A R+  S  C  ++V + GV  LF GV PR+ R
Sbjct:   74 LFAGPRSAVRFGTFDALSGVSRSRDLPAKFGQSTVDTA--AGFIAGIVEAALCQTPNQVISIKMTHDA-SPRGPNQYQGMVHAIGCMYRADGL-LGFYAGLGPAVLKGAVTNSIRFLGFGRLKRLIQGEPAPDGTPPPPLALWQAMLAGGTAGAISAVVSQPIDTVKANMMGLEAHRFRNSFSCLIELVRAGGVSCLFNGVAPRVVR 276          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A423WAC7_9PEZI (Uncharacterized protein n=4 Tax=Valsaceae TaxID=5117 RepID=A0A423WAC7_9PEZI)

HSP 1 Score: 123 bits (308), Expect = 1.510e-30
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query:   28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            ++ IRF  F++  SLLQ+ +G+V    A +AG  AG  ES   +TP ++I+ ++  D  + +     RGF HA+  I R  G  AGFF+G  PT  +   N+ +RFG YN      +     AP E L     F IGA AG ++ +VT P+DT+K+ +Q L A++ Y  S  CA  I    G++  + GV PR+ R
Sbjct:   85 KAGIRFVAFDQYKSLLQDAEGKVSGPRAALAGFAAGVTESLLAVTPTESIKTQLIDDRKSAKPR--MRGFLHAVPIIARERGI-AGFFAGFVPTTARQAANSAVRFGSYNFLKQAAQSYT--APGEKLSTPATFGIGAVAGLITVLVTQPLDTIKTRMQSLEAKKNYGNSFRCAALIFKEEGILTYWSGVLPRLAR 275          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A0G2FL47_9PEZI (Putative tricarboxylate transporter mitochondrial carrier protein n=3 Tax=Diaporthe TaxID=36922 RepID=A0A0G2FL47_9PEZI)

HSP 1 Score: 123 bits (308), Expect = 1.710e-30
Identity = 76/196 (38.78%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            ++ IRF  F++   LL + DG+V    A  AG  AG  ES   +TP ++I+ ++  D    R     RGF HA+  I R  G  AGFF+G  PT  +   N+ +RFG YN      +     AP E L     F IGA AG V+ +VT P+DT+K+ +Q L A+R Y  SL CA  I    GV+  + GV PR+ R
Sbjct:   91 KAGIRFVAFDQYKRLLADADGKVSGPRAAAAGFAAGVTESLLAVTPTESIKTQLIDD--RKRANPRMRGFLHAVPIIARERGI-AGFFAGFVPTTARQAANSAVRFGSYNFLKQAAQSYA--APGEKLSTPATFGIGALAGLVTVLVTQPLDTIKTRMQSLEAKRDYGNSLRCAGMIFRQEGVLTFWSGVLPRLAR 281          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A8A3P753_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3P753_9HELO)

HSP 1 Score: 122 bits (305), Expect = 4.010e-30
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query:   28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            ++ IRF  F++  +LLQ+ DG++     +VAG  AG  ES   +TP ++I+  +  D  + +     +GF HA+  I R  G R GFF G  PT  +   N+ +RFG Y     + +     AP E LGA + F IG  AG ++  VT P+DTVK+ +Q + ARR Y  S+ CA  I  + GV+  + G  PR+ R
Sbjct:   83 KAGIRFVAFDQYRALLQDADGKISGPRTVVAGFGAGVTESLLAVTPFESIKTTLIDDRKSAKPR--LKGFLHAVPIIARERGLR-GFFQGFVPTTARQSANSAVRFGSYTSLRQLAQSYA--APGEKLGALSTFGIGGLAGIITVYVTQPLDTVKTRMQSIEARRLYKNSVHCASLIARNEGVLTFWSGALPRLGR 273          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: R1D1S4_EMIHU (Mitochondrial citrate carrier n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D1S4_EMIHU)

HSP 1 Score: 122 bits (307), Expect = 5.270e-30
Identity = 80/206 (38.83%), Postives = 106/206 (51.46%), Query Frame = 1
Query:   13 VFSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTI----AGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRG--DAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            +F   RSA+RF TFE +++  Q   G    +    A TI    AG  E++ C TP Q I I+M  D  +PR  R Y G  H +  I R EG  AG+F G+ P V KG   N IRF  + +   + +   G    P  PL        G  AGAVSAV T PIDTVK+N+ G+   RY  +  C  ++V + G+  L  GV PR+CR
Sbjct:  119 IFGGPRSAVRFGTFETLTAASQRR-GMHQRLGTPTADTINGFAAGMAEAALCQTPNQVIAIKMIHD-QSPRGPRQYEGLVHCVACIWRAEGV-AGYFQGVGPAVTKGAATNAIRFLGFGQLKRLAQGPAGADGTPPPPLATWQAMLCGGIAGAVSAVATQPIDTVKANMMGIDGGRYRSAFHCTAELVRAGGLRVLMNGVGPRVCR 321          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A0C3QFF7_9AGAM (Uncharacterized protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QFF7_9AGAM)

HSP 1 Score: 120 bits (302), Expect = 8.810e-30
Identity = 66/197 (33.50%), Postives = 111/197 (56.35%), Query Frame = 1
Query:   28 RSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDA-PDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARR-YSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            ++ +RF ++++  SLL + +G+V     LVAG  AG  E+   +TP + I+ ++  D   P     +RG  H    I R EG  +G + GL+P V++ G N+ +RF  Y+     V+   G+A P + L +G  F+IG  AG ++   T P+D VK+ +Q L A++ Y  S  CA ++   +G++G ++G TPR+ R
Sbjct:   77 KAGVRFVSYDKYKSLLADSEGKVSAPRGLVAGLAAGMTEAVLAVTPSETIKTKLIDDSKRPNPR--FRGLIHGTTTIIREEGL-SGIYRGLFPVVLRQGANSAVRFTSYSTLKQFVQ---GNARPGQTLSSGITFAIGGLAGLITVYTTMPLDVVKTRMQSLEAKQLYKNSFHCAYKVFQENGILGFWKGTTPRLAR 267          
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Match: A0A7S4A3I2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3I2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.700e-29
Identity = 81/201 (40.30%), Postives = 107/201 (53.23%), Query Frame = 1
Query:   16 FSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESSTCLTPLQNIQIRMTQDGDAPRHARIYRG--FFHALNEIPRREGFRAGFFSGLWPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAGAVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTPRICR 612
            F+  RSA+RF  FE +S       G   L      G  AGA E++ C TP Q+IQI++  D       + Y    FF A   I R  G  + F+ GL P V KG L NC+RF  Y    G++R +     +E   A   F  GA AGA+SAV++ P+DTVK+N+ GL    Y+ SLDCAR IV + GV  L+ G  PR+ R
Sbjct:   79 FAGPRSAVRFAAFEFLSKDAPRTSGWDFL-----CGLGAGACEAALCQTPNQSIQIKLLHDASPAVVEKRYSHLPFFRACAAIGRHHGILS-FYDGLAPAVAKGALTNCVRFVGYK---GILRAS---GREENASAMESFGAGAVAGAISAVISQPVDTVKANMMGLDRGVYASSLDCARAIVKADGVRALWNGGGPRVVR 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9663.17046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT83_ECTSI5.800e-9271.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0CXV1_9EUKA2.270e-3941.38Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
W7T809_9STRA1.480e-3436.71Tricarboxylate transport mitochondrial-like protei... [more]
A0A0M0JMT8_9EUKA2.180e-3340.10Tricarboxylate transport mitochondrial-like protei... [more]
A0A423WAC7_9PEZI1.510e-3036.73Uncharacterized protein n=4 Tax=Valsaceae TaxID=51... [more]
A0A0G2FL47_9PEZI1.710e-3038.78Putative tricarboxylate transporter mitochondrial ... [more]
A0A8A3P753_9HELO4.010e-3036.73Uncharacterized protein n=1 Tax=Monilinia vaccinii... [more]
R1D1S4_EMIHU5.270e-3038.83Mitochondrial citrate carrier n=2 Tax=Emiliania hu... [more]
A0A0C3QFF7_9AGAM8.810e-3033.50Uncharacterized protein n=1 Tax=Tulasnella calospo... [more]
A0A7S4A3I2_9STRA1.700e-2940.30Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9663contigH-elongata_contig9663:2386..3818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue8e-74
Seed eggNOG ortholog2880.D8LT83
Preferred nameSLC25A1
KEGG koko:K04646,ko:K15100
KEGG TC2.A.29.7
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015137,GO:0015142,GO:0015238,GO:0015318,GO:0015711,GO:0015746,GO:0015849,GO:0015893,GO:0016006,GO:0016020,GO:0016021,GO:0016051,GO:0018130,GO:0019318,GO:0019319,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034220,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0035674,GO:0042221,GO:0042493,GO:0042891,GO:0042895,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046364,GO:0046390,GO:0046483,GO:0046942,GO:0046943,GO:0046949,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0055085,GO:0055086,GO:0071616,GO:0071702,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098656,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576,GO:1903825,GO:1905039,GO:1990542,GO:1990546
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size627
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9663.17046.1prot_H-elongata_contig9663.17046.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9663 2386..3818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931359.3316076-CDS-H-elongata_contig9663:2385..26151622931359.3316076-CDS-H-elongata_contig9663:2385..2615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9663 2386..2615 +
1691679804.5118487-CDS-H-elongata_contig9663:2385..26151691679804.5118487-CDS-H-elongata_contig9663:2385..2615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9663 2386..2615 +
1622931359.3496587-CDS-H-elongata_contig9663:3131..33631622931359.3496587-CDS-H-elongata_contig9663:3131..3363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9663 3132..3363 +
1691679804.5225406-CDS-H-elongata_contig9663:3131..33631691679804.5225406-CDS-H-elongata_contig9663:3131..3363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9663 3132..3363 +
1622931359.3642848-CDS-H-elongata_contig9663:3653..38181622931359.3642848-CDS-H-elongata_contig9663:3653..3818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9663 3654..3818 +
1691679804.5305321-CDS-H-elongata_contig9663:3653..38181691679804.5305321-CDS-H-elongata_contig9663:3653..3818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9663 3654..3818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9663.17046.1

>prot_H-elongata_contig9663.17046.1 ID=prot_H-elongata_contig9663.17046.1|Name=mRNA_H-elongata_contig9663.17046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
MFSSVFSRERSAIRFTTFERISSLLQEGDGQVHLINALVAGTIAGAVESS
TCLTPLQNIQIRMTQDGDAPRHARIYRGFFHALNEIPRREGFRAGFFSGL
WPTVVKGGLNNCIRFGLYNEAAGVVRRTRGDAPDEPLGAGTVFSIGAAAG
AVSAVVTHPIDTVKSNLQGLSARRYSGSLDCARQIVISSGVIGLFRGVTP
RICRCDWY*
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mRNA from alignment at H-elongata_contig9663:2386..3818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9663.17046.1 ID=mRNA_H-elongata_contig9663.17046.1|Name=mRNA_H-elongata_contig9663.17046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1433bp|location=Sequence derived from alignment at H-elongata_contig9663:2386..3818+ (Himanthalia elongata Himel1 dioecious)
ATGTTTTCTTCCGTCTTTTCGCGCGAAAGATCTGCGATACGATTCACAAC ATTTGAAAGAATATCTAGTTTACTCCAAGAGGGCGACGGGCAAGTACACT TGATCAATGCGCTGGTGGCAGGCACGATTGCGGGCGCTGTCGAGTCCTCC ACCTGTCTCACCCCTCTCCAGAACATTCAGATCAGAATGACCCAAGACGG GGACGCCCCACGGCACGCCAGAATATACCGGTGTGTCACCTGTAGCTACG TCGGAAGAGGGGAAACGCGGCAAAACGGGGAAGGAGTTTGGGGTAGTAGA GCCCCTTAGACTCAAACGTGACTCAATCTCAAAGTCATTTAACGATGCGA TCTGGTCGTGCATCAGAATTGGAAATACCTTAAATAATCTCCAAATATAA ACTCTTGTTACTTTTTGTAGATTGACAAAAGTTTTTTCATGTTGCTGTCG TCAAAGTCACCCTTTCTTCAGTCGATAACCTTGTATTGTATCGCGGTACA GGAAACGAGGATACTATGCAGCTAAGCTGTAACATTTTTTCATTTGTCAT TTCTATTTCTTTACTCTTTCCGGAAATCGAATAATTTCTATTCGCAGGCT CGCATCGTGTCATCCTTTCCTACGGACTCTTTTAACGACCCAACAAATGG GATCCAAGTTTGTCGAATAATATCATGTGTCGTTTAATAACGTGTTCGTG TTCGGCCCTCAACCCCACGCCGCGAACTTCTTGTTCGCCATCGTAGAGGG TTCTTTCACGCTCTCAATGAGATCCCGCGCCGGGAAGGCTTCCGCGCTGG ATTTTTCAGCGGCTTGTGGCCTACGGTAGTCAAGGGGGGCTTGAACAATT GCATACGGTTCGGGCTGTACAACGAGGCTGCAGGAGTCGTCAGGAGAACA CGCGGAGACGCGCCGGACGAGCCACTAGGGGCGGGAACTGTGTTCTCAAT AGGGGCGGCGGCGGGCGCCGTTAGCGCGGTGAGGTAGCCCCCTGAGCTAC GTGCCATAATACAGTTCTATATTTCATTGGTCATATGTTTTTCCCCCTCG TACGCACCCGACTGTTCTCCTTCTTGAGTATCGTCCACGTGTCTCGAGGG TAACCCCTAGCGGTTCGGGGTAAGGATCAGACTCCGCAAAAGGAGAAGAG TATATCCCACGCCACCAGATCGCGATCACACACGATCTAGGGCACGATGT ATAAGATGAACACTCTGCGCCTTCGCCGCCATTTCCTATGACGCTGTATA TTGCGTTCTGGGCTAAAGGTTGTAACTCATCCGATCGACACGGTGAAATC CAATTTACAAGGACTCTCGGCGAGGAGGTACTCGGGCAGCCTAGATTGTG CAAGGCAAATCGTGATATCTTCGGGTGTTATTGGTCTCTTCCGCGGGGTT ACTCCTCGGATATGCAGGTGTGACTGGTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig9663:2386..3818+

>mRNA_H-elongata_contig9663.17046.1 ID=mRNA_H-elongata_contig9663.17046.1|Name=mRNA_H-elongata_contig9663.17046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig9663:2386..3818+ (Himanthalia elongata Himel1 dioecious)
ATGTTTTCTTCCGTCTTTTCGCGCGAAAGATCTGCGATACGATTCACAAC
ATTTGAAAGAATATCTAGTTTACTCCAAGAGGGCGACGGGCAAGTACACT
TGATCAATGCGCTGGTGGCAGGCACGATTGCGGGCGCTGTCGAGTCCTCC
ACCTGTCTCACCCCTCTCCAGAACATTCAGATCAGAATGACCCAAGACGG
GGACGCCCCACGGCACGCCAGAATATACCGATGTTTTCTTCCGTCTTTTC
GCGCGAAAGATCTGCGATACGATTCACAACATTTGAAAGAATATCTAGTT
TACTCCAAGAGGGCGACGGGCAAGTACACTTGATCAATGCGCTGGTGGCA
GGCACGATTGCGGGCGCTGTCGAGTCCTCCACCTGTCTCACCCCTCTCCA
GAACATTCAGATCAGAATGACCCAAGACGGGGACGCCCCACGGCACGCCA
GAATATACCGAGGGTTCTTTCACGCTCTCAATGAGATCCCGCGCCGGGAA
GGCTTCCGCGCTGGATTTTTCAGCGGCTTGTGGCCTACGGTAGTCAAGGG
GGGCTTGAACAATTGCATACGGTTCGGGCTGTACAACGAGGCTGCAGGAG
TCGTCAGGAGAACACGCGGAGACGCGCCGGACGAGCCACTAGGGGCGGGA
ACTGTGTTCTCAATAGGGGCGGCGGCGGGCGCCGTTAGCGCGAGGGTTCT
TTCACGCTCTCAATGAGATCCCGCGCCGGGAAGGCTTCCGCGCTGGATTT
TTCAGCGGCTTGTGGCCTACGGTAGTCAAGGGGGGCTTGAACAATTGCAT
ACGGTTCGGGCTGTACAACGAGGCTGCAGGAGTCGTCAGGAGAACACGCG
GAGACGCGCCGGACGAGCCACTAGGGGCGGGAACTGTGTTCTCAATAGGG
GCGGCGGCGGGCGCCGTTAGCGCGGTTGTAACTCATCCGATCGACACGGT
GAAATCCAATTTACAAGGACTCTCGGCGAGGAGGTACTCGGGCAGCCTAG
ATTGTGCAAGGCAAATCGTGATATCTTCGGGTGTTATTGGTCTCTTCCGC
GGGGTTACTCCTCGGATATGCAGGTGTGACTGGTACTGAGTTGTAACTCA
TCCGATCGACACGGTGAAATCCAATTTACAAGGACTCTCGGCGAGGAGGT
ACTCGGGCAGCCTAGATTGTGCAAGGCAAATCGTGATATCTTCGGGTGTT
ATTGGTCTCTTCCGCGGGGTTACTCCTCGGATATGCAGGTGTGACTGGTA
CTGA
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