mRNA_H-elongata_contig9650.17036.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: D7FI09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI09_ECTSI) HSP 1 Score: 411 bits (1056), Expect = 1.280e-141 Identity = 205/316 (64.87%), Postives = 242/316 (76.58%), Query Frame = 1
Query: 1 MGCGVAYERGRPQYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLE--KHIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLGTIL 942
MG GVAYE G P TMTTCS +A ++ GDY++PDRRGVS H S P DRSKPFLH+SLYE+DFRN S EV+ L+ + G+ G +A K+ FD LD GNG + +RD+P++I+ LGRDVRPWI DRILKMFE RDG KV+WLDLQDGLRKV E+ R+ VSYKER +PEW+V+ RKV P VTHG++ +SCYQ DMGKDG+IPR+R +WYKTGM+STT+DLFEGTTK TY VPGY GFIP SK N AR+HGDM N R R DL LFYRHN PGYTGH+PAA ND P+RCGS+ LTTSGAA LG IL
Sbjct: 1 MGRGVAYENGVALAPPTMTTCSSEAFSNVTRGDYQVPDRRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPRGGERDGENAFKREFDRLDAGNGVVHIRDMPKLIQGVLGRDVRPWILDRILKMFEAKRDG-KVTWLDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVM-PAVTHGQVTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFEGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRLDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGIIL 314
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A835ZLH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLH4_9STRA) HSP 1 Score: 191 bits (484), Expect = 2.260e-54 Identity = 126/342 (36.84%), Postives = 181/342 (52.92%), Query Frame = 1
Query: 1 MGCGVAYERGRP-QYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVE-----QLEKH----IAVGKDGGASALK--------------KVFDGLDKG---NGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERV-VPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLGTIL 942
+G GV Y G P T+ T S +++ + D+R P +RG ++ + R+KPFLH +L++ +R++++E+E +E + +A +D A+++ +G + TID+ IP ++ + R W+ DR+ K E R G +V W L +V T S R +PEWV+ RK PT+ HG+ I SCYQ D+G G P R + +K GM TT DLFEGTTK T+HVPGY GFIP SK N A +HGDM + R+ +L LF++HNM GYTGH A ND CG++ TTSGAA LG +L
Sbjct: 46 VGHGVQYNEGPPIDEHATIKTVSAESTSHVTKQDFRPPGKRGCQAATAAA-AVARTKPFLHSTLHKESYRDINQEIEGFAAASVEAYRCAFLAAARDVQATSISLCGSSGXXXXXXXXXXXXXXSEGPMASPTIDVNQIPGLLVAVHSKPPR-WLADRLRKACEGDRSG-QVRWDTFVAALARVLSTASKDGSLLVRTAMPEWVLISRKA-HPTIQHGKRITSCYQHDVG--GAAPAQRQLTFKRGMRGTTQDLFEGTTKDTFHVPGYGGFIPASKVNARAMQHGDMQDARAYSANLRLFHKHNMAGYTGHQGHAACNDRGELLCGTHPATTSGAAALGLLL 381
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A7R9UFG0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFG0_9STRA) HSP 1 Score: 162 bits (409), Expect = 9.870e-44 Identity = 109/312 (34.94%), Postives = 157/312 (50.32%), Query Frame = 1
Query: 1 MGCGVAYERGRPQYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKER---VVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAV 927
+G G+ Y P P T ++ A+ ++ Y PDRRGVS N K F+ ++Y +DF +L ++ +L+ +A +K F +G G +D +P+V++ ALG I + F R G VSW D + +K+G+ + AAV VPEW+V K P V G ++SCYQ DMG + P+ + YK GM ST+ DL GTTK TYH+PGY GFIPES+ N++A + R+ R + + + GYTGH P+ ND P CG N LTT+GA
Sbjct: 34 VGTGLVYSAPLPTRPKWGETITKAATTLVRPRLYSAPDRRGVSALFEESNKA-LPKRFMGSTVYRSDFIDLRADLVKLQDACRS-----PAAFQKAFFHYSRG-GELDTMLLPKVLDMALGERASEGIKSKFAAAFSKSR-AGFVSWDDFR---QKLGQILEAAVKEGSSGGVSVPEWLVLSSKPI-PKVIVGPALKSCYQCDMGLRNENPQTKPYTYKAGMYSTSYDLLRGTTKDTYHLPGYDGFIPESRRNSFAITQVNAKRTRASRERIAENVKPAVSGYTGHIPSNLINDRGPPLCGLNPLTTTGAGA 333
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A7S2FHF5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHF5_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.400e-30 Identity = 64/146 (43.84%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 496 SYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLG 933
+Y+ VPEWV + + +T V + ++S YQ DMG + P +R KTGMA TT DL GTTK TYH+PG+SG IP ++ N HGD L L++RHNMPGYTG P ND G+N T+SGA+ LG
Sbjct: 114 TYQGATVPEWVTASKAITEDVVPR-QPVRSSYQTDMGMANEKPLDRPYISKTGMAGTTQDLCAGTTKATYHIPGFSGHIPTTQRNPRVVAHGDGQKVHDMPSHLRLYHRHNMPGYTGFRPTNAKNDKGERHSGANPATSSGASALG 258
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: G4ZGI1_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZGI1_PHYSP) HSP 1 Score: 125 bits (315), Expect = 8.080e-30 Identity = 109/336 (32.44%), Postives = 157/336 (46.73%), Query Frame = 1
Query: 43 PLTMTTCSQDA--SLSLQWG------DYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDF--------RNLSKEVEQLEK-HIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDG-----GKVSW------LDLQDGL--RKVGETVRAA--------VSYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHG------DMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
P TM ++ S+ +Q G DYR+PDRRGVSVN P SKPF+ S Y +DF R L+ +E+ E+ +AV K +V TI + + V++ ALG P R++++F + D K+SW +D D L R++ A+ S+ ++ + E++V H S YQ D G G+ PR+R K GMASTTMD+ GT++ T +PGY+GF+P + N A H D L+P + R L LF+ N+PGYTGH P N R GS+ TT+G
Sbjct: 46 PPTMNRMGKNTHESMGMQSGQHVQPEDYRVPDRRGVSVNQ----PRPSSKPFIANSTYLHDFPAFDEERRRVLTVPLEEYERAFMAVAKRNNXXXXXQV-------GPTIQLAQVQEVLQLALGDGAVP----RVVEVFHSFLDRRGSVRDKISWGLFRQAVDHVDDLFDRELNRATTASSTSKTWGSTSFADKQLNEYLV-----------HSSTPASSYQMDFGTYGENPRDRPYMRKRGMASTTMDMNPGTSRVTNQIPGYAGFLPLTSHNAEALAHANGPEDIDSLHP-TPRVALRLFHSDNIPGYTGHKPVDCVNYRGECRAGSDPGTTTG 354
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: D0NLJ8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLJ8_PHYIT) HSP 1 Score: 119 bits (297), Expect = 2.550e-27 Identity = 95/309 (30.74%), Postives = 144/309 (46.60%), Query Frame = 1
Query: 49 TMTTCSQDA--SLSLQWG------DYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGT-IDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGG-----KVSWLDLQDGLRKVGETVRAAVSYKERV---VPEW--VVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
TM ++A S+++Q G DYR+PDRRGVSVN N SKPF+ + Y +DF + + + V +A V ++ +GT I + + V++ ALG P R++ +F + D G ++SW + V + + + + + W + K + + H S +QKD G GD P +R K GMASTT DL T+ T +PGY GF+P T A+ + L P + R +L L++ N+PGYTGH P N R GS+ TT+G
Sbjct: 48 TMNRMGRNAHESVAMQTGQLVQPEDYRVPDRRGVSVNQKQPN----SKPFIANTTYLHDFPPFGDDCRRA---LQVTLGDYETAFVAVAKKNNQHDGTMIQLLQVSEVLKLALGDAAAP----RVIDLFHSYLDRGGSSRDRISWALFCQAVDHVNSLFDHELHHGKTLPSSIKTWGTMTFTEKQFNEYLVHSSTPASSHQKDFGTYGDNPLDRPYMRKRGMASTTADLNPAATRVTNQIPGYGGFLPLESHRTEAQTNDKDLRP-TPRIELRLYHSENIPGYTGHKPVDCANYRGECRAGSDLDTTTG 344
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A7S2S8A6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8A6_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.780e-27 Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 1
Query: 517 PEWVV-SKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLGTIL 942
PEW+ SK+ + P + ++S YQKD G D +++ +K GMA+TT+DL EGT K+T+H+PGYSG IP ++ N + D PR +L L+++HNM GYTGH+P ND G ++LT SGA+ +G +L
Sbjct: 116 PEWLTASKQTLVEPMARYP--VRSSYQKDFGISVDSMKDKPYLHKNGMATTTLDLNEGTAKQTHHIPGYSGTIPVNRRNEDIVRQSDAAEPRKVASELRLYHKHNMTGYTGHNPTHASNDYGVRLSGCSTLTMSGASAVGMML 256
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A1V9ZS18_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS18_9STRA) HSP 1 Score: 118 bits (295), Expect = 3.580e-27 Identity = 98/300 (32.67%), Postives = 147/300 (49.00%), Query Frame = 1
Query: 55 TTCSQDASL-SLQWGDYRIPDR-----RGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGTIDM--RDIPRVIEDAL-GRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERVVPEWV--VSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKT-GMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
T C Q+ + S+ D+ + + RG +H N + K FL +SLYE DF + + + L + + ++ K+ FD L + G RD+ + + A+ G + D MF+ I DG ++W ++ L ++ V A S K P W+ +S R++ T+ S +Q D G G P R +T GMASTT DL +GTTK T+H+P Y GF+PE+ N A GD PRSK DL L++ +N+PGYTGH P N A G++ TT+G
Sbjct: 44 TMCVQNPTFGSVYRADFGLVTKADYVSRGPKESH---NDVVAGKKFLGQSLYETDFVHFQNQGKAL---LEMPRE----EYKRAFDALAEAGGQEPRLSRDLVKELLTAVYGTPPSARMLDIYAHMFDPIADG-YITWPVFEEALERLTLFVSNATS-KLHGKPSWMEYLSLRRLLPGTMP-----SSSHQIDYGTYGSDPLARPYLGRTKGMASTTSDLADGTTKNTFHIPRYGGFMPEAPHNPTAVAQGDCPQPRSKGADLRLYHLNNIPGYTGHKPVDSKNVRGEAATGTDQRTTNG 326
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A329T0D6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T0D6_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.090e-27 Identity = 93/309 (30.10%), Postives = 145/309 (46.93%), Query Frame = 1
Query: 43 PLTMTTCSQDA--SLSLQWG------DYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGK-DGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFE---NIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERV---VPEW--VVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
P TM + A S+++Q G DYR+PDRRGVSVN + SKPF+ + Y +DF +E ++ H+ + + + A+ K + + TI + + V++ ALG P + D + N RD ++SW + V + + + + W + K + + H S +QKD G GD P +R K GMASTT DL T++ T +PGY GF+P + + A+ + + L P + R L L++ N+PGYTGH N R GS+ TT+G
Sbjct: 46 PPTMNRMGRHALESVAMQNGQLVQPEDYRVPDRRGVSVNQKQPD----SKPFIANTTYLHDFPEFDEERRRV-LHLPLEEYERAFMAVAKKTNNQQQEGATIQLNQVQEVLKLALGDAAAPRVIDVFHSFLDRRGNTRD--RISWALFSQAVDHVNSLFDLELHHGKTAASSIKTWGTMTFAEKQLNEYLVHSSTPASSHQKDFGTYGDNPLDRPYMRKRGMASTTADLNPATSRVTNQIPGYGGFLPLTSHSAEAQANDEELLP-TPRIALRLYHSENIPGYTGHKAVDCANYRGECRAGSDPGTTTG 346
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: H3H106_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H106_PHYRM) HSP 1 Score: 115 bits (289), Expect = 4.010e-26 Identity = 95/308 (30.84%), Postives = 141/308 (45.78%), Query Frame = 1
Query: 49 TMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFEN-------IRDGGKVSWLDLQDGLRKVGETVRAAVSYKERVVP--EWVVSK---RKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGD------MLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
T + + + +Q DYR+PDRRGVSVN + KPF+ S Y++DF +E ++ H++V + A G + TI + + V++ LG P R+++MF + +RD +VSW + + V + + E +W SK K + H S +Q D G G PR+R K GMASTT DL GT++ T +PGY+GF+P + N A L+P + R L LF+ N+PGYTGH P N GS+ TT+G
Sbjct: 56 THESVAMQSGQVVQPEDYRVPDRRGVSVNQTRPE----FKPFISSSTYQHDFPAYDEERRRV-LHVSVEEYENAFMTVAKSVGQQQDEATIQLAQVQEVLKLVLGDAAVP----RVVEMFHSYVDRRGSVRD--RVSWRLFRQAIDHVNNLLDRELHRGETANSGSKWWGSKTFAEKQLDEFLVHSSTPPSTHQIDFGTYGGNPRDRPYMRKRGMASTTTDLNPGTSRVTNQIPGYAGFLPLTSHNAEAVAQATGPEEIGRLHP-TPRVALRLFHSDNIPGYTGHKPVDCANYRGECLAGSDPGTTTG 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9650.17036.1 >prot_H-elongata_contig9650.17036.1 ID=prot_H-elongata_contig9650.17036.1|Name=mRNA_H-elongata_contig9650.17036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp MGCGVAYERGRPQYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNback to top mRNA from alignment at H-elongata_contig9650:1622..4064+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9650.17036.1 ID=mRNA_H-elongata_contig9650.17036.1|Name=mRNA_H-elongata_contig9650.17036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2443bp|location=Sequence derived from alignment at H-elongata_contig9650:1622..4064+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9650:1622..4064+ >mRNA_H-elongata_contig9650.17036.1 ID=mRNA_H-elongata_contig9650.17036.1|Name=mRNA_H-elongata_contig9650.17036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig9650:1622..4064+ (Himanthalia elongata Himel1 dioecious)back to top |