mRNA_H-elongata_contig9650.17036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9650.17036.1
Unique NamemRNA_H-elongata_contig9650.17036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: D7FI09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI09_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 1.280e-141
Identity = 205/316 (64.87%), Postives = 242/316 (76.58%), Query Frame = 1
Query:    1 MGCGVAYERGRPQYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLE--KHIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLGTIL 942
            MG GVAYE G    P TMTTCS +A  ++  GDY++PDRRGVS  H S  P DRSKPFLH+SLYE+DFRN S EV+ L+  +    G+  G +A K+ FD LD GNG + +RD+P++I+  LGRDVRPWI DRILKMFE  RDG KV+WLDLQDGLRKV E+ R+ VSYKER +PEW+V+ RKV  P VTHG++ +SCYQ DMGKDG+IPR+R +WYKTGM+STT+DLFEGTTK TY VPGY GFIP SK N  AR+HGDM N R  R DL LFYRHN PGYTGH+PAA  ND  P+RCGS+ LTTSGAA LG IL
Sbjct:    1 MGRGVAYENGVALAPPTMTTCSSEAFSNVTRGDYQVPDRRGVSAKHFSAKPQDRSKPFLHDSLYEHDFRNFSDEVDGLDGGEGPRGGERDGENAFKREFDRLDAGNGVVHIRDMPKLIQGVLGRDVRPWILDRILKMFEAKRDG-KVTWLDLQDGLRKVAESARSDVSYKEREMPEWLVANRKVM-PAVTHGQVTESCYQMDMGKDGEIPRDRRIWYKTGMSSTTLDLFEGTTKATYQVPGYGGFIPASKMNLRAREHGDMKNSRRPRLDLRLFYRHNNPGYTGHAPAAACNDPGPSRCGSDPLTTSGAAALGIIL 314          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A835ZLH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLH4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.260e-54
Identity = 126/342 (36.84%), Postives = 181/342 (52.92%), Query Frame = 1
Query:    1 MGCGVAYERGRP-QYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVE-----QLEKH----IAVGKDGGASALK--------------KVFDGLDKG---NGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERV-VPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLGTIL 942
            +G GV Y  G P     T+ T S +++  +   D+R P +RG     ++   + R+KPFLH +L++  +R++++E+E      +E +    +A  +D  A+++                      +G   + TID+  IP ++     +  R W+ DR+ K  E  R G +V W      L +V  T     S   R  +PEWV+  RK   PT+ HG+ I SCYQ D+G  G  P  R + +K GM  TT DLFEGTTK T+HVPGY GFIP SK N  A +HGDM + R+   +L LF++HNM GYTGH   A  ND     CG++  TTSGAA LG +L
Sbjct:   46 VGHGVQYNEGPPIDEHATIKTVSAESTSHVTKQDFRPPGKRGCQAATAAA-AVARTKPFLHSTLHKESYRDINQEIEGFAAASVEAYRCAFLAAARDVQATSISLCGSSGXXXXXXXXXXXXXXSEGPMASPTIDVNQIPGLLVAVHSKPPR-WLADRLRKACEGDRSG-QVRWDTFVAALARVLSTASKDGSLLVRTAMPEWVLISRKA-HPTIQHGKRITSCYQHDVG--GAAPAQRQLTFKRGMRGTTQDLFEGTTKDTFHVPGYGGFIPASKVNARAMQHGDMQDARAYSANLRLFHKHNMAGYTGHQGHAACNDRGELLCGTHPATTSGAAALGLLL 381          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A7R9UFG0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFG0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.870e-44
Identity = 109/312 (34.94%), Postives = 157/312 (50.32%), Query Frame = 1
Query:    1 MGCGVAYERGRPQYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKER---VVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAV 927
            +G G+ Y    P  P    T ++ A+  ++   Y  PDRRGVS      N     K F+  ++Y +DF +L  ++ +L+           +A +K F    +G G +D   +P+V++ ALG      I  +    F   R  G VSW D +   +K+G+ + AAV         VPEW+V   K   P V  G  ++SCYQ DMG   + P+ +   YK GM ST+ DL  GTTK TYH+PGY GFIPES+ N++A    +    R+ R  +    +  + GYTGH P+   ND  P  CG N LTT+GA  
Sbjct:   34 VGTGLVYSAPLPTRPKWGETITKAATTLVRPRLYSAPDRRGVSALFEESNKA-LPKRFMGSTVYRSDFIDLRADLVKLQDACRS-----PAAFQKAFFHYSRG-GELDTMLLPKVLDMALGERASEGIKSKFAAAFSKSR-AGFVSWDDFR---QKLGQILEAAVKEGSSGGVSVPEWLVLSSKPI-PKVIVGPALKSCYQCDMGLRNENPQTKPYTYKAGMYSTSYDLLRGTTKDTYHLPGYDGFIPESRRNSFAITQVNAKRTRASRERIAENVKPAVSGYTGHIPSNLINDRGPPLCGLNPLTTTGAGA 333          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A7S2FHF5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHF5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.400e-30
Identity = 64/146 (43.84%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  496 SYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLG 933
            +Y+   VPEWV + + +T   V   + ++S YQ DMG   + P +R    KTGMA TT DL  GTTK TYH+PG+SG IP ++ N     HGD          L L++RHNMPGYTG  P    ND      G+N  T+SGA+ LG
Sbjct:  114 TYQGATVPEWVTASKAITEDVVPR-QPVRSSYQTDMGMANEKPLDRPYISKTGMAGTTQDLCAGTTKATYHIPGFSGHIPTTQRNPRVVAHGDGQKVHDMPSHLRLYHRHNMPGYTGFRPTNAKNDKGERHSGANPATSSGASALG 258          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: G4ZGI1_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZGI1_PHYSP)

HSP 1 Score: 125 bits (315), Expect = 8.080e-30
Identity = 109/336 (32.44%), Postives = 157/336 (46.73%), Query Frame = 1
Query:   43 PLTMTTCSQDA--SLSLQWG------DYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDF--------RNLSKEVEQLEK-HIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDG-----GKVSW------LDLQDGL--RKVGETVRAA--------VSYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHG------DMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
            P TM    ++   S+ +Q G      DYR+PDRRGVSVN     P   SKPF+  S Y +DF        R L+  +E+ E+  +AV K        +V         TI +  +  V++ ALG    P    R++++F +  D       K+SW      +D  D L  R++     A+         S+ ++ + E++V           H     S YQ D G  G+ PR+R    K GMASTTMD+  GT++ T  +PGY+GF+P +  N  A  H       D L+P + R  L LF+  N+PGYTGH P    N     R GS+  TT+G
Sbjct:   46 PPTMNRMGKNTHESMGMQSGQHVQPEDYRVPDRRGVSVNQ----PRPSSKPFIANSTYLHDFPAFDEERRRVLTVPLEEYERAFMAVAKRNNXXXXXQV-------GPTIQLAQVQEVLQLALGDGAVP----RVVEVFHSFLDRRGSVRDKISWGLFRQAVDHVDDLFDRELNRATTASSTSKTWGSTSFADKQLNEYLV-----------HSSTPASSYQMDFGTYGENPRDRPYMRKRGMASTTMDMNPGTSRVTNQIPGYAGFLPLTSHNAEALAHANGPEDIDSLHP-TPRVALRLFHSDNIPGYTGHKPVDCVNYRGECRAGSDPGTTTG 354          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: D0NLJ8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLJ8_PHYIT)

HSP 1 Score: 119 bits (297), Expect = 2.550e-27
Identity = 95/309 (30.74%), Postives = 144/309 (46.60%), Query Frame = 1
Query:   49 TMTTCSQDA--SLSLQWG------DYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGT-IDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGG-----KVSWLDLQDGLRKVGETVRAAVSYKERV---VPEW--VVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
            TM    ++A  S+++Q G      DYR+PDRRGVSVN    N    SKPF+  + Y +DF     +  +    + V      +A   V    ++ +GT I +  +  V++ ALG    P    R++ +F +  D G     ++SW      +  V       + + + +   +  W  +    K  +  + H     S +QKD G  GD P +R    K GMASTT DL    T+ T  +PGY GF+P     T A+ +   L P + R +L L++  N+PGYTGH P    N     R GS+  TT+G
Sbjct:   48 TMNRMGRNAHESVAMQTGQLVQPEDYRVPDRRGVSVNQKQPN----SKPFIANTTYLHDFPPFGDDCRRA---LQVTLGDYETAFVAVAKKNNQHDGTMIQLLQVSEVLKLALGDAAAP----RVIDLFHSYLDRGGSSRDRISWALFCQAVDHVNSLFDHELHHGKTLPSSIKTWGTMTFTEKQFNEYLVHSSTPASSHQKDFGTYGDNPLDRPYMRKRGMASTTADLNPAATRVTNQIPGYGGFLPLESHRTEAQTNDKDLRP-TPRIELRLYHSENIPGYTGHKPVDCANYRGECRAGSDLDTTTG 344          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A7S2S8A6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8A6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.780e-27
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  517 PEWVV-SKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSGAAVLGTIL 942
            PEW+  SK+ +  P   +   ++S YQKD G   D  +++   +K GMA+TT+DL EGT K+T+H+PGYSG IP ++ N    +  D   PR    +L L+++HNM GYTGH+P    ND      G ++LT SGA+ +G +L
Sbjct:  116 PEWLTASKQTLVEPMARYP--VRSSYQKDFGISVDSMKDKPYLHKNGMATTTLDLNEGTAKQTHHIPGYSGTIPVNRRNEDIVRQSDAAEPRKVASELRLYHKHNMTGYTGHNPTHASNDYGVRLSGCSTLTMSGASAVGMML 256          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A1V9ZS18_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS18_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.580e-27
Identity = 98/300 (32.67%), Postives = 147/300 (49.00%), Query Frame = 1
Query:   55 TTCSQDASL-SLQWGDYRIPDR-----RGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGTIDM--RDIPRVIEDAL-GRDVRPWIGDRILKMFENIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERVVPEWV--VSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKT-GMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
            T C Q+ +  S+   D+ +  +     RG   +H   N +   K FL +SLYE DF +   + + L   + + ++      K+ FD L +  G      RD+ + +  A+ G      + D    MF+ I DG  ++W   ++ L ++   V  A S K    P W+  +S R++   T+       S +Q D G  G  P  R    +T GMASTT DL +GTTK T+H+P Y GF+PE+  N  A   GD   PRSK  DL L++ +N+PGYTGH P    N    A  G++  TT+G
Sbjct:   44 TMCVQNPTFGSVYRADFGLVTKADYVSRGPKESH---NDVVAGKKFLGQSLYETDFVHFQNQGKAL---LEMPRE----EYKRAFDALAEAGGQEPRLSRDLVKELLTAVYGTPPSARMLDIYAHMFDPIADG-YITWPVFEEALERLTLFVSNATS-KLHGKPSWMEYLSLRRLLPGTMP-----SSSHQIDYGTYGSDPLARPYLGRTKGMASTTSDLADGTTKNTFHIPRYGGFMPEAPHNPTAVAQGDCPQPRSKGADLRLYHLNNIPGYTGHKPVDSKNVRGEAATGTDQRTTNG 326          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: A0A329T0D6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T0D6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.090e-27
Identity = 93/309 (30.10%), Postives = 145/309 (46.93%), Query Frame = 1
Query:   43 PLTMTTCSQDA--SLSLQWG------DYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGK-DGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFE---NIRDGGKVSWLDLQDGLRKVGETVRAAVSYKERV---VPEW--VVSKRKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
            P TM    + A  S+++Q G      DYR+PDRRGVSVN    +    SKPF+  + Y +DF    +E  ++  H+ + + +    A+ K  +   +   TI +  +  V++ ALG    P + D      +   N RD  ++SW      +  V       + + +     +  W  +    K  +  + H     S +QKD G  GD P +R    K GMASTT DL   T++ T  +PGY GF+P +  +  A+ + + L P + R  L L++  N+PGYTGH      N     R GS+  TT+G
Sbjct:   46 PPTMNRMGRHALESVAMQNGQLVQPEDYRVPDRRGVSVNQKQPD----SKPFIANTTYLHDFPEFDEERRRV-LHLPLEEYERAFMAVAKKTNNQQQEGATIQLNQVQEVLKLALGDAAAPRVIDVFHSFLDRRGNTRD--RISWALFSQAVDHVNSLFDLELHHGKTAASSIKTWGTMTFAEKQLNEYLVHSSTPASSHQKDFGTYGDNPLDRPYMRKRGMASTTADLNPATSRVTNQIPGYGGFLPLTSHSAEAQANDEELLP-TPRIALRLYHSENIPGYTGHKAVDCANYRGECRAGSDPGTTTG 346          
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Match: H3H106_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H106_PHYRM)

HSP 1 Score: 115 bits (289), Expect = 4.010e-26
Identity = 95/308 (30.84%), Postives = 141/308 (45.78%), Query Frame = 1
Query:   49 TMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKNPLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGLDKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFEN-------IRDGGKVSWLDLQDGLRKVGETVRAAVSYKERVVP--EWVVSK---RKVTSPTVTHGEIIQSCYQKDMGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSNTWARKHGD------MLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSNSLTTSG 918
            T  + +  +   +Q  DYR+PDRRGVSVN +        KPF+  S Y++DF    +E  ++  H++V +   A        G  +   TI +  +  V++  LG    P    R+++MF +       +RD  +VSW   +  +  V   +   +   E      +W  SK    K     + H     S +Q D G  G  PR+R    K GMASTT DL  GT++ T  +PGY+GF+P +  N  A            L+P + R  L LF+  N+PGYTGH P    N       GS+  TT+G
Sbjct:   56 THESVAMQSGQVVQPEDYRVPDRRGVSVNQTRPE----FKPFISSSTYQHDFPAYDEERRRV-LHVSVEEYENAFMTVAKSVGQQQDEATIQLAQVQEVLKLVLGDAAVP----RVVEMFHSYVDRRGSVRD--RVSWRLFRQAIDHVNNLLDRELHRGETANSGSKWWGSKTFAEKQLDEFLVHSSTPPSTHQIDFGTYGGNPRDRPYMRKRGMASTTTDLNPGTSRVTNQIPGYAGFLPLTSHNAEAVAQATGPEEIGRLHP-TPRVALRLFHSDNIPGYTGHKPVDCANYRGECLAGSDPGTTTG 351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9650.17036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI09_ECTSI1.280e-14164.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZLH4_9STRA2.260e-5436.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UFG0_9STRA9.870e-4434.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2FHF5_9STRA1.400e-3043.84Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
G4ZGI1_PHYSP8.080e-3032.44Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
D0NLJ8_PHYIT2.550e-2730.74Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A7S2S8A6_9STRA2.780e-2741.26Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9ZS18_9STRA3.580e-2732.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A329T0D6_9STRA5.090e-2730.10Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
H3H106_PHYRM4.010e-2630.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9650contigH-elongata_contig9650:1622..4064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.1
Seed ortholog evalue2.3e-112
Seed eggNOG ortholog2880.D7FI09
EggNOG OGs2CYS9@1,2S63T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006620.1
Exons5
Model size945
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9650.17036.1prot_H-elongata_contig9650.17036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9650 1622..4064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931358.19498-CDS-H-elongata_contig9650:1621..17401622931358.19498-CDS-H-elongata_contig9650:1621..1740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 1622..1740 +
1691679804.117155-CDS-H-elongata_contig9650:1621..17401691679804.117155-CDS-H-elongata_contig9650:1621..1740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 1622..1740 +
1622931358.206568-CDS-H-elongata_contig9650:2268..23681622931358.206568-CDS-H-elongata_contig9650:2268..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 2269..2368 +
1691679804.131694-CDS-H-elongata_contig9650:2268..23681691679804.131694-CDS-H-elongata_contig9650:2268..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 2269..2368 +
1622931358.2193851-CDS-H-elongata_contig9650:2678..30111622931358.2193851-CDS-H-elongata_contig9650:2678..3011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 2679..3011 +
1691679804.1417034-CDS-H-elongata_contig9650:2678..30111691679804.1417034-CDS-H-elongata_contig9650:2678..3011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 2679..3011 +
1622931358.2306607-CDS-H-elongata_contig9650:3415..35711622931358.2306607-CDS-H-elongata_contig9650:3415..3571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 3416..3571 +
1691679804.1505096-CDS-H-elongata_contig9650:3415..35711691679804.1505096-CDS-H-elongata_contig9650:3415..3571Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 3416..3571 +
1622931358.244007-CDS-H-elongata_contig9650:3827..40641622931358.244007-CDS-H-elongata_contig9650:3827..4064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 3828..4064 +
1691679804.1597557-CDS-H-elongata_contig9650:3827..40641691679804.1597557-CDS-H-elongata_contig9650:3827..4064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9650 3828..4064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9650.17036.1

>prot_H-elongata_contig9650.17036.1 ID=prot_H-elongata_contig9650.17036.1|Name=mRNA_H-elongata_contig9650.17036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=315bp
MGCGVAYERGRPQYPLTMTTCSQDASLSLQWGDYRIPDRRGVSVNHSSKN
PLDRSKPFLHESLYENDFRNLSKEVEQLEKHIAVGKDGGASALKKVFDGL
DKGNGTIDMRDIPRVIEDALGRDVRPWIGDRILKMFENIRDGGKVSWLDL
QDGLRKVGETVRAAVSYKERVVPEWVVSKRKVTSPTVTHGEIIQSCYQKD
MGKDGDIPRNRCVWYKTGMASTTMDLFEGTTKRTYHVPGYSGFIPESKSN
TWARKHGDMLNPRSKRPDLLLFYRHNMPGYTGHSPAAPHNDSCPARCGSN
SLTTSGAAVLGTIL*
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mRNA from alignment at H-elongata_contig9650:1622..4064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9650.17036.1 ID=mRNA_H-elongata_contig9650.17036.1|Name=mRNA_H-elongata_contig9650.17036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2443bp|location=Sequence derived from alignment at H-elongata_contig9650:1622..4064+ (Himanthalia elongata Himel1 dioecious)
ATGGGATGCGGTGTGGCGTACGAGAGAGGCCGCCCTCAATATCCATTAAC GATGACGACATGCAGTCAAGATGCATCCTTAAGTCTGCAGTGGGGGGACT ATCGCATCCCAGACAGGCGGTGAAGAACAAATGATGGTGTTGTCATTAAA TTCCATTTTTTAATATGGTATGTAGAATGCGGTCCAACGATATACGCAGT GAAGGTTGATCAATTAAGGACCATGGCGATGGGCGTAATCCCGTTATGTA TCGCGCATTGCACGGGTCTCGCCACGGTCCTCCCGGGCATCTCTACGTAT CCCTCATGTGCCAATTCGCGGCTAATGCGCGGGGGGATCGGAGCCGGGGG GGTCGACATAGGCTGGTAAATATATTAGTAAAATGTAGGGGCGCCATCTT TAATCTTTAAGTATCTACCCGATCACTCGTCTGGGGGGCTGAACGAGTTA GACTCCCTAGATACGGTTAGCTTATATTTGTTATGGCCAATATAATCTAA CCGCATCTAGGGAGTCTAACTTTTTCAAAGGTGTCCTGATGTACCTTGAA TGGGTCAGTGTATCTGTATTTCGATATCAACCCTGTCATTCTGCCTTACG TGTCCTCCCATCCATGCTGTCTCTACTCAATGAAATCCTCCATCCAGTGG GGTCTCCGTTAATCACTCCTCCAAGAACCCTCTCGACAGATCTAAGCCGT TCCTGCACGAATCGTTATACGAGAACGATTTCAGAAACCTCTCGAAGGTA GGTGGCTTCACAAGAGAAAAGCTTGATCTCGATTTGCATTTTACCGCGTC ATGAAAAGGTCGATGACATATTAATATTAATAGTTCAAATTCCTAAACAG TTTGAAACTACGTCCGCCGCAGGCCTTGAGAATGTGTCCTGGAACGGCGG CACTGGGTAGGATTGAAAATTATCTTCATCGCGACATTGTACGCCGTGAC CTCTGTGACGAGTGGTGCGCCAACTGAATTGATTAAACGCGCGAGGTGTG TGCATGTTTAACGGAAACACCCGGAAACATCGTTTAAAACCCCATGCACA ACAGCAGGAGGTGGAACAGCTGGAAAAGCATATCGCCGTCGGGAAGGATG GAGGCGCAAGCGCGCTGAAGAAGGTGTTCGACGGGCTGGATAAAGGCAAC GGCACCATCGACATGCGGGACATACCGCGAGTAATAGAGGACGCTCTCGG GCGCGACGTTCGACCTTGGATTGGAGATCGCATCCTCAAGATGTTTGAAA ATATCAGAGACGGCGGGAAGGTATCGTGGTTGGACCTGCAAGACGGTCTG CGCAAGGTTGGCGAAACCGTGAGGGCTGCAGTGTCGTACAAGGAACGAGT CGTCCCAGAATGGGTCGTCTCTAAGCGCAAGGTAACGAGCGTAAGCTTAA CTCTAGGAGGCAGTCACCGTCCTAAATCCCCAGGAGCATGCAACTTATCG TTAAGGCGTACACAAGTCTGGTTGCGGGTTCCTGATGATTTTTGAAATGG CTGTCAAGCGTGTAGAGATCTCCCGGATCCAATGGAAGCATGGTACGGTG CATAATTAGCAACACATCCCGCAGTACTCACGCTCTTTGCCGGCAAATCG ATAGGGACTAAATAGACCATCGTAGATAGTCCACCGCGAAGACGCTCACC GCACCCTGCATGCGCATGGACGGAGCATCTTTGAGGGAACTATCTGCTAG CAACCTCTCCCGGGCTTGTTAACCTTGACGAGCTGACCTCCCCATGCCTT CATTCTCAACAACGGACGCACGCGTGTTTGTAACTCGGTGGAAGCCGACG GTGACACACGGAGAGATTATCCAGAGCTGCTATCAGAAAGACATGGGCAA GGACGGAGATATTCCTCGCAACCGTTGTGTCTGGTACAAGACCGGTATGG CTTCCACCACTATGGACCTCTTCGAAGGCACCACCAAGAGGACCTACCAT GTTGGTTCATGCTTGTAGACTATGCGCCCAATCTGCAGACAAATGAATCA GGTTTCTTACCACCAAGTTAAAATTCGGTTATTACAGAGCGCTCTCGTAT TCTCTCCCCTCTCACAGCTGTTGTGGGGAGGGGGGTACCCAGGTTTTGCA TGCCTCGGCTATCGGCGCTTTCATGATGCCACACTTGCACAACACCTTGC GCGAGCGTACTTTATCCACCTTTCCCTGACCCCTTCGGCCTCTCGCCGTC CCAAAGGTTCCGGGTTACAGCGGCTTCATCCCCGAGAGCAAATCTAACAC ATGGGCTCGCAAGCACGGCGACATGCTCAACCCGAGATCCAAGCGCCCGG ACCTGCTACTCTTCTACCGCCACAACATGCCCGGTTACACTGGGCACTCT CCCGCCGCGCCTCACAACGACTCGTGTCCCGCACGTTGCGGCTCAAACTC GCTCACAACGTCAGGAGCGGCTGTTCTCGGTACCATACTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig9650:1622..4064+

>mRNA_H-elongata_contig9650.17036.1 ID=mRNA_H-elongata_contig9650.17036.1|Name=mRNA_H-elongata_contig9650.17036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at H-elongata_contig9650:1622..4064+ (Himanthalia elongata Himel1 dioecious)
ATGGGATGCGGTGTGGCGTACGAGAGAGGCCGCCCTCAATATCCATTAAC
GATGACGACATGCAGTCAAGATGCATCCTTAAGTCTGCAGTGGGGGGACT
ATCGCATCCCAGACAGGCGATGGGATGCGGTGTGGCGTACGAGAGAGGCC
GCCCTCAATATCCATTAACGATGACGACATGCAGTCAAGATGCATCCTTA
AGTCTGCAGTGGGGGGACTATCGCATCCCAGACAGGCGTGGGGTCTCCGT
TAATCACTCCTCCAAGAACCCTCTCGACAGATCTAAGCCGTTCCTGCACG
AATCGTTATACGAGAACGATTTCAGAAACCTCTCGAAGTGGGGTCTCCGT
TAATCACTCCTCCAAGAACCCTCTCGACAGATCTAAGCCGTTCCTGCACG
AATCGTTATACGAGAACGATTTCAGAAACCTCTCGAAGGAGGTGGAACAG
CTGGAAAAGCATATCGCCGTCGGGAAGGATGGAGGCGCAAGCGCGCTGAA
GAAGGTGTTCGACGGGCTGGATAAAGGCAACGGCACCATCGACATGCGGG
ACATACCGCGAGTAATAGAGGACGCTCTCGGGCGCGACGTTCGACCTTGG
ATTGGAGATCGCATCCTCAAGATGTTTGAAAATATCAGAGACGGCGGGAA
GGTATCGTGGTTGGACCTGCAAGACGGTCTGCGCAAGGTTGGCGAAACCG
TGAGGGCTGCAGTGTCGTACAAGGAACGAGTCGTCCCAGAATGGGTCGTC
TCTAAGCGCAAGGTAACGAGCGAGGTGGAACAGCTGGAAAAGCATATCGC
CGTCGGGAAGGATGGAGGCGCAAGCGCGCTGAAGAAGGTGTTCGACGGGC
TGGATAAAGGCAACGGCACCATCGACATGCGGGACATACCGCGAGTAATA
GAGGACGCTCTCGGGCGCGACGTTCGACCTTGGATTGGAGATCGCATCCT
CAAGATGTTTGAAAATATCAGAGACGGCGGGAAGGTATCGTGGTTGGACC
TGCAAGACGGTCTGCGCAAGGTTGGCGAAACCGTGAGGGCTGCAGTGTCG
TACAAGGAACGAGTCGTCCCAGAATGGGTCGTCTCTAAGCGCAAGGTAAC
GAGCCCGACGGTGACACACGGAGAGATTATCCAGAGCTGCTATCAGAAAG
ACATGGGCAAGGACGGAGATATTCCTCGCAACCGTTGTGTCTGGTACAAG
ACCGGTATGGCTTCCACCACTATGGACCTCTTCGAAGGCACCACCAAGAG
GACCTACCATCCGACGGTGACACACGGAGAGATTATCCAGAGCTGCTATC
AGAAAGACATGGGCAAGGACGGAGATATTCCTCGCAACCGTTGTGTCTGG
TACAAGACCGGTATGGCTTCCACCACTATGGACCTCTTCGAAGGCACCAC
CAAGAGGACCTACCATGTTCCGGGTTACAGCGGCTTCATCCCCGAGAGCA
AATCTAACACATGGGCTCGCAAGCACGGCGACATGCTCAACCCGAGATCC
AAGCGCCCGGACCTGCTACTCTTCTACCGCCACAACATGCCCGGTTACAC
TGGGCACTCTCCCGCCGCGCCTCACAACGACTCGTGTCCCGCACGTTGCG
GCTCAAACTCGCTCACAACGTCAGGAGCGGCTGTTCTCGGTACCATACTG
TGAGTTCCGGGTTACAGCGGCTTCATCCCCGAGAGCAAATCTAACACATG
GGCTCGCAAGCACGGCGACATGCTCAACCCGAGATCCAAGCGCCCGGACC
TGCTACTCTTCTACCGCCACAACATGCCCGGTTACACTGGGCACTCTCCC
GCCGCGCCTCACAACGACTCGTGTCCCGCACGTTGCGGCTCAAACTCGCT
CACAACGTCAGGAGCGGCTGTTCTCGGTACCATACTGTGA
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