mRNA_H-elongata_contig96416.17032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96416.17032.1
Unique NamemRNA_H-elongata_contig96416.17032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96416.17032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96416contigH-elongata_contig96416:1264..1597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size320
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96416.17032.1prot_H-elongata_contig96416.17032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96416 1307..1597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931357.8909512-UTR-H-elongata_contig96416:1263..13061622931357.8909512-UTR-H-elongata_contig96416:1263..1306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96416 1264..1306 -
1691679804.0189514-UTR-H-elongata_contig96416:1263..13061691679804.0189514-UTR-H-elongata_contig96416:1263..1306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96416 1264..1306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931357.9250324-CDS-H-elongata_contig96416:1306..13461622931357.9250324-CDS-H-elongata_contig96416:1306..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96416 1307..1346 -
1691679804.027833-CDS-H-elongata_contig96416:1306..13461691679804.027833-CDS-H-elongata_contig96416:1306..1346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96416 1307..1346 -
1622931357.9474852-CDS-H-elongata_contig96416:1361..15971622931357.9474852-CDS-H-elongata_contig96416:1361..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96416 1362..1597 -
1691679804.0375743-CDS-H-elongata_contig96416:1361..15971691679804.0375743-CDS-H-elongata_contig96416:1361..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96416 1362..1597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96416.17032.1

>prot_H-elongata_contig96416.17032.1 ID=prot_H-elongata_contig96416.17032.1|Name=mRNA_H-elongata_contig96416.17032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
CEPLPPVFRCSPPNFNPRVRIPIAVCLCVCVFIKLHITANAIRPFRSSST
VINPLNGGSIIFATKTSAQIVCVCVCVCVTACRDVMERLRR*
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mRNA from alignment at H-elongata_contig96416:1264..1597-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96416.17032.1 ID=mRNA_H-elongata_contig96416.17032.1|Name=mRNA_H-elongata_contig96416.17032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=334bp|location=Sequence derived from alignment at H-elongata_contig96416:1264..1597- (Himanthalia elongata Himel1 dioecious)
TGTGAACCACTTCCTCCGGTGTTCCGATGTTCGCCGCCCAATTTTAACCC
CCGTGTTAGGATCCCAATTGCCGTATGTTTGTGTGTGTGTGTATTTATTA
AATTGCACATAACCGCTAATGCAATCCGGCCCTTTCGTTCTAGTAGTACA
GTAATTAATCCTCTCAATGGGGGGTCAATAATATTTGCTACAAAAACCTC
TGCTCAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTA
GAACTGCCTGCCGAGACGTTATGGAGCGACTCCGACGTTAGGTGGTCTTG
TTAACAATATTGTAGAACCTTGTAACAAAGTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig96416:1264..1597-

>mRNA_H-elongata_contig96416.17032.1 ID=mRNA_H-elongata_contig96416.17032.1|Name=mRNA_H-elongata_contig96416.17032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig96416:1264..1597- (Himanthalia elongata Himel1 dioecious)
TGTGAACCACTTCCTCCGGTGTTCCGATGTTCGCCGCCCAATTTTAACCC
CCGTGTTAGGATCCCAATTGCCGTATGTTTGTGTGTGTGTGTATTTATTA
AATTGCACATAACCGCTAATGCAATCCGGCCCTTTCGTTCTAGTAGTACA
GTAATTAATCCTCTCAATGGGGGGTCAATAATATTTGCTACAAAAACCTC
TGCTCAGATTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGAACCACTTCC
TCCGGTGTTCCGATGTTCGCCGCCCAATTTTAACCCCCGTGTTAGGATCC
CAATTGCCGTATGTTTGTGTGTGTGTGTATTTATTAAATTGCACATAACC
GCTAATGCAATCCGGCCCTTTCGTTCTAGTAGTACAGTAATTAATCCTCT
CAATGGGGGGTCAATAATATTTGCTACAAAAACCTCTGCTCAGATTGTGT
GTGTGTGTGTGTGTGTGTGTGTAACTGCCTGCCGAGACGTTATGGAGCGA
CTCCGACGTTAGAACTGCCTGCCGAGACGTTATGGAGCGACTCCGACGTT
AG
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