mRNA_H-elongata_contig96352.17025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96352.17025.1
Unique NamemRNA_H-elongata_contig96352.17025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96352.17025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96352contigH-elongata_contig96352:1591..2430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size840
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96352.17025.1prot_H-elongata_contig96352.17025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96352 1930..2376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931357.1144755-UTR-H-elongata_contig96352:1590..19291622931357.1144755-UTR-H-elongata_contig96352:1590..1929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96352 1591..1929 +
1691679803.6377482-UTR-H-elongata_contig96352:1590..19291691679803.6377482-UTR-H-elongata_contig96352:1590..1929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96352 1591..1929 +
1622931357.1399193-UTR-H-elongata_contig96352:2376..24301622931357.1399193-UTR-H-elongata_contig96352:2376..2430Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96352 2377..2430 +
1691679803.6545134-UTR-H-elongata_contig96352:2376..24301691679803.6545134-UTR-H-elongata_contig96352:2376..2430Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig96352 2377..2430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931357.125965-CDS-H-elongata_contig96352:1929..23761622931357.125965-CDS-H-elongata_contig96352:1929..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96352 1930..2376 +
1691679803.6460233-CDS-H-elongata_contig96352:1929..23761691679803.6460233-CDS-H-elongata_contig96352:1929..2376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96352 1930..2376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96352.17025.1

>prot_H-elongata_contig96352.17025.1 ID=prot_H-elongata_contig96352.17025.1|Name=mRNA_H-elongata_contig96352.17025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MSSNLIHSSAFFPTPYGRRSIQTTRKLQYFTAWRSRRQRRGVGGVIRAGA
GRRRYLERFNIQRRNQGVTSSPSAQRPLPPALPLQPHPARFFPTPQPHLQ
LELPQNATFTRRDQARKRLSETGRNALTLTIQNRQETIIKHIEEKGKW*
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mRNA from alignment at H-elongata_contig96352:1591..2430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96352.17025.1 ID=mRNA_H-elongata_contig96352.17025.1|Name=mRNA_H-elongata_contig96352.17025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig96352:1591..2430+ (Himanthalia elongata Himel1 dioecious)
GCAGGAAGTTCTTGCTTCGATTCATGACCCGCGCGACTCAACTCGCCTCA
GGTTTTGCTATTTGCCATCCTCAGCTCCTTCCCCCTCCCCCACCCTCCTT
CCGAGGGTGCGTGGTCAATAGTCAATAGTCTCACAATTTAAGCATGAAAA
ACTTGAGTGCGCCCCCGTTCCCCCTTTCCCCGCCTTTCTTCCGTTCGCGC
GTTGATTTGGTGTGGATCCTCTTGTAGAGAAACATCCAGCTCCGACAAAA
ATCACAGCCTTGCAGCTCGGCTCGGCTCGGCTCGTCTCAGCTCACCTCGC
CTCTAGGCACGATTGCGATATACCCGCGTCACCATTTCGATGTCCTCTAA
CCTGATACACTCCAGCGCTTTTTTCCCCACACCGTATGGACGGAGAAGCA
TCCAAACAACACGAAAACTCCAATATTTTACTGCGTGGCGCTCACGACGA
CAACGACGGGGGGTGGGGGGCGTTATAAGGGCGGGCGCGGGTCGGCGGCG
GTATCTTGAACGCTTCAACATCCAGAGACGAAACCAAGGAGTAACTTCTT
CACCTTCCGCGCAAAGACCCCTCCCCCCCGCGCTTCCCCTGCAACCCCAT
CCTGCACGGTTCTTTCCAACGCCTCAACCCCACCTCCAATTGGAACTCCC
TCAAAACGCCACCTTTACACGGAGAGACCAAGCCCGGAAGAGGCTATCAG
AAACTGGCCGAAACGCTTTGACTCTCACCATACAAAATAGACAGGAGACT
ATAATAAAACACATTGAAGAGAAGGGAAAATGGTAGTGTCGGGGAGAGAC
AATATATGACGGAGAGATCCAAGCATTGGATTTCTTCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig96352:1591..2430+

>mRNA_H-elongata_contig96352.17025.1 ID=mRNA_H-elongata_contig96352.17025.1|Name=mRNA_H-elongata_contig96352.17025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig96352:1591..2430+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTCTAACCTGATACACTCCAGCGCTTTTTTCCCCACACCGTATGG
ACGGAGAAGCATCCAAACAACACGAAAACTCCAATATTTTACTGCGTGGC
GCTCACGACGACAACGACGGGGGGTGGGGGGCGTTATAAGGGCGGGCGCG
GGTCGGCGGCGGTATCTTGAACGCTTCAACATCCAGAGACGAAACCAAGG
AGTAACTTCTTCACCTTCCGCGCAAAGACCCCTCCCCCCCGCGCTTCCCC
TGCAACCCCATCCTGCACGGTTCTTTCCAACGCCTCAACCCCACCTCCAA
TTGGAACTCCCTCAAAACGCCACCTTTACACGGAGAGACCAAGCCCGGAA
GAGGCTATCAGAAACTGGCCGAAACGCTTTGACTCTCACCATACAAAATA
GACAGGAGACTATAATAAAACACATTGAAGAGAAGGGAAAATGGTAGATG
TCCTCTAACCTGATACACTCCAGCGCTTTTTTCCCCACACCGTATGGACG
GAGAAGCATCCAAACAACACGAAAACTCCAATATTTTACTGCGTGGCGCT
CACGACGACAACGACGGGGGGTGGGGGGCGTTATAAGGGCGGGCGCGGGT
CGGCGGCGGTATCTTGAACGCTTCAACATCCAGAGACGAAACCAAGGAGT
AACTTCTTCACCTTCCGCGCAAAGACCCCTCCCCCCCGCGCTTCCCCTGC
AACCCCATCCTGCACGGTTCTTTCCAACGCCTCAACCCCACCTCCAATTG
GAACTCCCTCAAAACGCCACCTTTACACGGAGAGACCAAGCCCGGAAGAG
GCTATCAGAAACTGGCCGAAACGCTTTGACTCTCACCATACAAAATAGAC
AGGAGACTATAATAAAACACATTGAAGAGAAGGGAAAATGGTAG
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