mRNA_H-elongata_contig96200.17018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96200.17018.1
Unique NamemRNA_H-elongata_contig96200.17018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.880e-16
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDSLA 156
            EIEAYRSARY+SAAEA+ RL GF  ++R P+VSSLR+HLPNEQQI+VD+SL+
Sbjct:   36 EIEAYRSARYISAAEAAWRLLGFHVIERNPSVSSLRLHLPNEQQIVVDESLS 87
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.880e-16
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDSLA 156
            EIEAYRSARY+SAAEA+ RL GF  ++R P+VSSLR+HLPNEQQI+VD+SL+
Sbjct:  115 EIEAYRSARYISAAEAAWRLLGFHVIERNPSVSSLRLHLPNEQQIVVDESLS 166
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: UPI001D0278BA (uncharacterized protein LOC123055764 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0278BA)

HSP 1 Score: 54.3 bits (129), Expect = 3.880e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDS 150
            EI+ Y  ARY+SA EAS R+FGF    RQP+V  L+ HL +EQ ++  DS
Sbjct:  294 EIQMYLDARYLSAGEASWRIFGFELQHRQPSVQRLQFHLQDEQMVVFPDS 343
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: UPI00084252D6 (uncharacterized protein LOC123077279 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI00084252D6)

HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDS 150
            EI+ Y  ARY+SA EAS R+FGF    RQP+V  L+ HL +EQ ++  DS
Sbjct:  718 EIQMYLDARYLSAGEASWRIFGFELQHRQPSVQRLQFHLQDEQMVVFPDS 767
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: A0A2G5ERP8_AQUCA (ATP-dependent DNA helicase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5ERP8_AQUCA)

HSP 1 Score: 52.8 bits (125), Expect = 1.360e-6
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDS 150
            +++ Y   RY+SA+EAS R+FGF T  R PAV  L  HL NEQQ+   D+
Sbjct:  444 KVKTYLDCRYISASEASWRIFGFSTQFRDPAVERLLFHLENEQQVTYRDT 493
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: UPI0010FC5C97 (uncharacterized protein LOC114924929 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI0010FC5C97)

HSP 1 Score: 52.0 bits (123), Expect = 2.450e-6
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDD 147
            EI+ Y   RY+SA EAS RLFGF    ++P V  L  HLPNEQ ++ +D
Sbjct:  227 EIQNYYDCRYISACEASWRLFGFEIQFKEPNVICLPFHLPNEQNVLYED 275
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: UPI000DEC28B6 (uncharacterized protein LOC112697631 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEC28B6)

HSP 1 Score: 52.0 bits (123), Expect = 2.540e-6
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDD 147
            EI+ Y   RY+SA EAS RLFGF    ++P V  L  HLPNEQ ++ +D
Sbjct:  489 EIQNYYDCRYISACEASWRLFGFEIQYKEPNVIRLPFHLPNEQNVLYED 537
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: A0A6P4BVH7_ARADU (ATP-dependent DNA helicase n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P4BVH7_ARADU)

HSP 1 Score: 52.0 bits (123), Expect = 2.550e-6
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDD 147
            EI+ Y   RY+SA EAS RLFGF    ++P V  L  HLPNEQ ++ +D
Sbjct:  108 EIQNYYDCRYISACEASWRLFGFEIQYKEPNVIRLPFHLPNEQNVLYED 156
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: A0A2G5CNL1_AQUCA (Helitron_like_N domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CNL1_AQUCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.550e-6
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDS 150
            EI+ Y   RY+SA+EAS R+FGF T  R+PAV  L  HL +EQ +   DS
Sbjct:  659 EIKTYLDCRYISASEASWRIFGFSTQFREPAVERLPFHLEDEQVVTYRDS 708
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BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Match: A0A6P5MVD2_ARADU (uncharacterized protein LOC107458044 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5MVD2_ARADU)

HSP 1 Score: 52.0 bits (123), Expect = 2.550e-6
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDD 147
            EI+ Y   RY+SA EAS RLFGF    ++P V  L  HLPNEQ ++ +D
Sbjct:  650 EIQNYYDCRYISACEASWRLFGFEIQYKEPNVIRLPFHLPNEQNVLYED 698
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96200.17018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZJ6_9PHAE5.880e-1673.08ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0I5_9PHAE5.880e-1673.08ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI001D0278BA3.880e-752.00uncharacterized protein LOC123055764 n=1 Tax=Triti... [more]
UPI00084252D63.910e-752.00uncharacterized protein LOC123077279 n=1 Tax=Triti... [more]
A0A2G5ERP8_AQUCA1.360e-650.00ATP-dependent DNA helicase n=1 Tax=Aquilegia coeru... [more]
UPI0010FC5C972.450e-651.02uncharacterized protein LOC114924929 n=1 Tax=Arach... [more]
UPI000DEC28B62.540e-651.02uncharacterized protein LOC112697631 n=1 Tax=Arach... [more]
A0A6P4BVH7_ARADU2.550e-651.02ATP-dependent DNA helicase n=1 Tax=Arachis duranen... [more]
A0A2G5CNL1_AQUCA2.550e-652.00Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6P5MVD2_ARADU2.550e-651.02uncharacterized protein LOC107458044 n=1 Tax=Arach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96200contigH-elongata_contig96200:2231..2392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931356.6453948-CDS-H-elongata_contig96200:2230..23921622931356.6453948-CDS-H-elongata_contig96200:2230..2392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96200 2231..2392 -
1691679803.489434-CDS-H-elongata_contig96200:2230..23921691679803.489434-CDS-H-elongata_contig96200:2230..2392Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96200 2231..2392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96200.17018.1prot_H-elongata_contig96200.17018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96200 2231..2392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96200.17018.1

>prot_H-elongata_contig96200.17018.1 ID=prot_H-elongata_contig96200.17018.1|Name=mRNA_H-elongata_contig96200.17018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
EIEAYRSARYVSAAEASRRLFGFITMDRQPAVSSLRIHLPNEQQIIVDDS
LAC*
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mRNA from alignment at H-elongata_contig96200:2231..2392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96200.17018.1 ID=mRNA_H-elongata_contig96200.17018.1|Name=mRNA_H-elongata_contig96200.17018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig96200:2231..2392- (Himanthalia elongata Himel1 dioecious)
GAGATCGAGGCGTACCGTTCGGCTCGATACGTTTCCGCAGCCGAGGCTTC
TAGGCGTTTGTTTGGATTTATTACAATGGACCGTCAGCCCGCTGTTTCAT
CGCTCCGAATCCATCTTCCAAACGAACAACAAATAATCGTGGATGACTCT
CTCGCGTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig96200:2231..2392-

>mRNA_H-elongata_contig96200.17018.1 ID=mRNA_H-elongata_contig96200.17018.1|Name=mRNA_H-elongata_contig96200.17018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig96200:2231..2392- (Himanthalia elongata Himel1 dioecious)
GAGATCGAGGCGTACCGTTCGGCTCGATACGTTTCCGCAGCCGAGGCTTC
TAGGCGTTTGTTTGGATTTATTACAATGGACCGTCAGCCCGCTGTTTCAT
CGCTCCGAATCCATCTTCCAAACGAACAACAAATAATCGTGGATGACTCT
CTCGCGTGCTGAGAGATCGAGGCGTACCGTTCGGCTCGATACGTTTCCGC
AGCCGAGGCTTCTAGGCGTTTGTTTGGATTTATTACAATGGACCGTCAGC
CCGCTGTTTCATCGCTCCGAATCCATCTTCCAAACGAACAACAAATAATC
GTGGATGACTCTCTCGCGTGCTGA
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