mRNA_H-elongata_contig96181.17016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96181.17016.1
Unique NamemRNA_H-elongata_contig96181.17016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96181.17016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96181contigH-elongata_contig96181:592..1974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size465
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96181.17016.1prot_H-elongata_contig96181.17016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96181 594..1974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931356.3616836-CDS-H-elongata_contig96181:593..7551622931356.3616836-CDS-H-elongata_contig96181:593..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96181 594..755 -
1691679803.406834-CDS-H-elongata_contig96181:593..7551691679803.406834-CDS-H-elongata_contig96181:593..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96181 594..755 -
1622931356.3793466-CDS-H-elongata_contig96181:1303..15341622931356.3793466-CDS-H-elongata_contig96181:1303..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96181 1304..1534 -
1691679803.4145536-CDS-H-elongata_contig96181:1303..15341691679803.4145536-CDS-H-elongata_contig96181:1303..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96181 1304..1534 -
1622931356.3928735-CDS-H-elongata_contig96181:1905..19741622931356.3928735-CDS-H-elongata_contig96181:1905..1974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96181 1906..1974 -
1691679803.422412-CDS-H-elongata_contig96181:1905..19741691679803.422412-CDS-H-elongata_contig96181:1905..1974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96181 1906..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96181.17016.1

>prot_H-elongata_contig96181.17016.1 ID=prot_H-elongata_contig96181.17016.1|Name=mRNA_H-elongata_contig96181.17016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
VSPSAEELLRLASAGQRVMALPQVGEALRWRAEYLQATQGGHGIDADGMS
ALLAVGDSLSQWSKVTSPPIEKYSAGPADGGSGVDGYQRRLVAGLTAGQG
DLSWYSWRARASRAATLPHSTPGSSGISSASAPKTTLAEARALLDAVSPA
TGNG
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mRNA from alignment at H-elongata_contig96181:592..1974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96181.17016.1 ID=mRNA_H-elongata_contig96181.17016.1|Name=mRNA_H-elongata_contig96181.17016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1383bp|location=Sequence derived from alignment at H-elongata_contig96181:592..1974- (Himanthalia elongata Himel1 dioecious)
GTGTCACCATCGGCGGAGGAGCTGCTACGCCTCGCGAGCGCGGGGCAGCG
AGTCATGGCGTTGCCGCAGGCGAGACAAAACGAGGCTAGGAATAAGATTG
TCTTAACAAAAGCTCCGCGGTTGATTTTTGAGCGGGGGGAACATAACTCG
TGAAGGTTTCTTCCGGCCAACAGGATGGGGAAGGGGGTAAGAACTGAGGG
CGGTGCCACTGAAACGTGTCCTCGCACATATATTTTGGTTTGGTTTGGTT
TAGTTTAGGTTAGTTTAGTTTCCATCGTGCTGCTGCCTCTCCCCTGTAGC
CCTCCCAACCGCTTTTACCTTATCCTGGTTGAATGTTTCTTTTTTTTTTA
CTCTAGAATCACGCCCGAAGGTTCGTAACATTTCCTCCTTAATCTTACAT
GTATTGCGCGATGTGTGTTGTGTTTGTGTGGGCATGAAAGGTGGGGGAGG
CGTTACGGTGGCGGGCTGAGTACCTGCAAGCAACTCAAGGTGGGCACGGG
ATCGACGCCGACGGGATGTCAGCCTTGCTCGCCGTGGGTGACTCGCTCTC
GCAGTGGTCCAAGGTAACATCACCGCCGATCGAGAAATACTCCGCTGGCC
CTGCCGATGGTGGAAGCGGAGTCGACGGTTACCAACGACGTCTCGTGGCG
GGGTTGACGGCCGGACAAGGGGTGCGTCTGTCCCGAGCGTACTTACGGCC
CTTAAAGTCTAAAACGTATCTCGCCCAGCTTCGTCCTCTCGAGGACGCGT
AGTTAATGGTCTAAGAGCTAAAGCATAAGGCATGCAAAACTTAGTACCCC
CCCCTCCCACCCCCCTCCTTATCTCGTCGTATTTAGCGCGCGTGTGGCGA
ATGAACTAGGAGAGCGCAACAAAATTATTGGATTTTTTTTTCGCTTTCTT
GGGGATTGTGGGATATATTTTTTTCCTCCCCGGCAAGGAGAAAAAGGGGC
ATAGGTGAAGTTGTTCCTGTTACCTGTTCCTGTTACTACGGCCCAGACGA
TTCAGATAAATTTTGTTTGATTACTCGTTGGTTTGTTTCTTATTTTTCCT
CCCTTTTTCTCTATTTATTTCTCATTTGGATTGGCTGGCGTTCCTGACCT
GATATACTTGAAAATTCTCCCCTTCTCTCTCCGTCGCATCCCTCGTCTTT
TGGATCTCTTTTGCTTTATATATATATATATATATATATACATATCTTGT
GGCTTTCCCGGTTTCTCAGGATCTTAGTTGGTACAGCTGGCGAGCTCGAG
CCTCCCGCGCTGCCACCTTACCGCATTCTACACCAGGGAGCTCCGGCATC
TCCTCGGCTTCCGCACCAAAAACTACGCTAGCCGAAGCCCGCGCTCTTCT
GGATGCCGTGTCTCCTGCCACCGGAAACGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig96181:592..1974-

>mRNA_H-elongata_contig96181.17016.1 ID=mRNA_H-elongata_contig96181.17016.1|Name=mRNA_H-elongata_contig96181.17016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig96181:592..1974- (Himanthalia elongata Himel1 dioecious)
GTGTCACCATCGGCGGAGGAGCTGCTACGCCTCGCGAGCGCGGGGCAGCG
AGTCATGGCGTTGCCGCAGGTGTCACCATCGGCGGAGGAGCTGCTACGCC
TCGCGAGCGCGGGGCAGCGAGTCATGGCGTTGCCGCAGGTGGGGGAGGCG
TTACGGTGGCGGGCTGAGTACCTGCAAGCAACTCAAGGTGGGCACGGGAT
CGACGCCGACGGGATGTCAGCCTTGCTCGCCGTGGGTGACTCGCTCTCGC
AGTGGTCCAAGGTAACATCACCGCCGATCGAGAAATACTCCGCTGGCCCT
GCCGATGGTGGAAGCGGAGTCGACGGTTACCAACGACGTCTCGTGGCGGG
GTTGACGGCCGGACAAGGGGTGGGGGAGGCGTTACGGTGGCGGGCTGAGT
ACCTGCAAGCAACTCAAGGTGGGCACGGGATCGACGCCGACGGGATGTCA
GCCTTGCTCGCCGTGGGTGACTCGCTCTCGCAGTGGTCCAAGGTAACATC
ACCGCCGATCGAGAAATACTCCGCTGGCCCTGCCGATGGTGGAAGCGGAG
TCGACGGTTACCAACGACGTCTCGTGGCGGGGTTGACGGCCGGACAAGGG
GATCTTAGTTGGTACAGCTGGCGAGCTCGAGCCTCCCGCGCTGCCACCTT
ACCGCATTCTACACCAGGGAGCTCCGGCATCTCCTCGGCTTCCGCACCAA
AAACTACGCTAGCCGAAGCCCGCGCTCTTCTGGATGCCGTGTCTCCTGCC
ACCGGAAACGGTGATCTTAGTTGGTACAGCTGGCGAGCTCGAGCCTCCCG
CGCTGCCACCTTACCGCATTCTACACCAGGGAGCTCCGGCATCTCCTCGG
CTTCCGCACCAAAAACTACGCTAGCCGAAGCCCGCGCTCTTCTGGATGCC
GTGTCTCCTGCCACCGGAAACGGT
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