mRNA_H-elongata_contig96124.17008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig96124.17008.1
Unique Name	mRNA_H-elongata_contig96124.17008.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: UPI001CC759F5 (mitogen-activated protein kinase kinase kinase 20-like n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC759F5)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-7
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1

Query:    1 RLMVDVCQGVTHVHDHGFVHSDIKLQNILLY--------EPAYNRCIAKLSDFG 138
            R    + QG+ H+HDHG+VH DIK QNILL         + +++ C+AK++DFG
Sbjct:  120 RYTRSILQGLHHIHDHGYVHCDIKPQNILLVLCSSSSSSDTSHDDCVAKIADFG 173

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: A0A3M7M4A9_9PLEO (Serine threonine kinase n=1 Tax=Pyrenophora seminiperda CCB06 TaxID=1302712 RepID=A0A3M7M4A9_9PLEO)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-6
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1

Query:    4 LMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            L VDVC GVT +H+ G +H DIK  NIL++     + IAK+SDFG
Sbjct:  190 LAVDVCAGVTALHEVGIIHGDIKPANILIFRHPELQFIAKISDFG 234

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: A0A6A5TPG1_9PLEO (Serine/threonine protein kinase n=1 Tax=Byssothecium circinans TaxID=147558 RepID=A0A6A5TPG1_9PLEO)

HSP 1 Score: 50.8 bits (120), Expect = 4.580e-6
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1

Query:    4 LMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            L +DVC GV+ +H+ G +H DIK  N+L+++    + +AK+SDFG
Sbjct:  183 LAIDVCAGVSALHEVGIIHGDIKPANVLIFKDPELKFVAKISDFG 227

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: N4WKL5_COCH4 (Protein kinase domain-containing protein n=3 Tax=Cochliobolus heterostrophus TaxID=5016 RepID=N4WKL5_COCH4)

HSP 1 Score: 50.4 bits (119), Expect = 6.260e-6
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1

Query:    4 LMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            L +DVC GV+ +H+ G +H DIK  N+L+++    + +AK+SDFG
Sbjct:  183 LAIDVCAGVSALHEVGIIHGDIKPANVLIFKHPELKFVAKISDFG 227

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: W6XZL8_COCCA (Protein kinase domain-containing protein n=2 Tax=Bipolaris TaxID=33194 RepID=W6XZL8_COCCA)

HSP 1 Score: 50.4 bits (119), Expect = 6.260e-6
Identity = 20/45 (44.44%), Postives = 32/45 (71.11%), Query Frame = 1

Query:    4 LMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            L +DVC GV+ +H+ G +H DIK  N+L+++    + +AK+SDFG
Sbjct:  183 LAIDVCAGVSALHEVGIIHGDIKPANVLIFKHPELKFVAKISDFG 227

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: G7K6M1_MEDTR (MAP3K-like kinase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7K6M1_MEDTR)

HSP 1 Score: 50.1 bits (118), Expect = 8.510e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1

Query:    1 RLMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            R    V QG+ HVH++GFVH D+KLQNIL++E        K+SDFG
Sbjct:  110 RYTRSVVQGLKHVHENGFVHCDVKLQNILVFENDE----VKISDFG 151

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: UPI001CC35326 (mitogen-activated protein kinase kinase kinase 20-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC35326)

HSP 1 Score: 50.1 bits (118), Expect = 8.540e-6
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1

Query:    1 RLMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAY--------NRCIAKLSDFG 138
            R    + QG+ H+H+HG+VH DIK QNILL   ++        N  IAK++DFG
Sbjct:  120 RYTRSILQGLDHIHEHGYVHCDIKPQNILLVRCSFPSSSTSHNNDYIAKIADFG 173

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: A0A200QYW7_9MAGN (Protein kinase domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QYW7_9MAGN)

HSP 1 Score: 49.7 bits (117), Expect = 8.760e-6
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1

Query:    1 RLMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            R    + QG+ ++H HG+VHSDIK QNILL      +   K++DFG
Sbjct:  109 RYTKSITQGLNYIHQHGYVHSDIKPQNILLCSSTGKQSEVKIADFG 154

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BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: A0A7C9EHY7_OPUST (Protein kinase domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EHY7_OPUST)

HSP 1 Score: 48.5 bits (114), Expect = 9.020e-6
Identity = 19/41 (46.34%), Postives = 32/41 (78.05%), Query Frame = 1

Query:   16 VCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            + +G++++H+ GFVH DIKLQN+LL++      +AK++DFG
Sbjct:   58 ILKGLSYIHEQGFVHCDIKLQNVLLFDDG----VAKIADFG 94

[Close]

BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Match: A0A0K9QQB3_SPIOL (Protein kinase domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QQB3_SPIOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.160e-5
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1

Query:    1 RLMVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG 138
            R    V +G+ H+H+ GFVH DIKLQN+LL++       AK++DFG
Sbjct:  104 RYTKSVLKGLCHIHESGFVHCDIKLQNVLLFQDG----TAKIADFG 145

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot

BLAST of mRNA_H-elongata_contig96124.17008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI001CC759F5	2.720e-7	44.44	mitogen-activated protein kinase kinase kinase 20-...	[more]
A0A3M7M4A9_9PLEO	1.310e-6	53.33	Serine threonine kinase n=1 Tax=Pyrenophora semini...	[more]
A0A6A5TPG1_9PLEO	4.580e-6	44.44	Serine/threonine protein kinase n=1 Tax=Byssotheci...	[more]
N4WKL5_COCH4	6.260e-6	44.44	Protein kinase domain-containing protein n=3 Tax=C...	[more]
W6XZL8_COCCA	6.260e-6	44.44	Protein kinase domain-containing protein n=2 Tax=B...	[more]
G7K6M1_MEDTR	8.510e-6	52.17	MAP3K-like kinase n=1 Tax=Medicago truncatula TaxI...	[more]
UPI001CC35326	8.540e-6	44.44	mitogen-activated protein kinase kinase kinase 20-...	[more]
A0A200QYW7_9MAGN	8.760e-6	45.65	Protein kinase domain n=1 Tax=Macleaya cordata Tax...	[more]
A0A7C9EHY7_OPUST	9.020e-6	46.34	Protein kinase domain-containing protein (Fragment...	[more]
A0A0K9QQB3_SPIOL	1.160e-5	47.83	Protein kinase domain-containing protein n=1 Tax=S...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig96124	contig	H-elongata_contig96124:605..742 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	138
Cds size	132
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931355.3103383-UTR-H-elongata_contig96124:604..610	1622931355.3103383-UTR-H-elongata_contig96124:604..610	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig96124 605..610 +
1691679802.9477947-UTR-H-elongata_contig96124:604..610	1691679802.9477947-UTR-H-elongata_contig96124:604..610	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig96124 605..610 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931355.3319008-CDS-H-elongata_contig96124:610..742	1622931355.3319008-CDS-H-elongata_contig96124:610..742	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig96124 611..742 +
1691679802.956868-CDS-H-elongata_contig96124:610..742	1691679802.956868-CDS-H-elongata_contig96124:610..742	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig96124 611..742 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig96124.17008.1	prot_H-elongata_contig96124.17008.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig96124 611..742 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig96124:605..742+
coding sequence from alignment at H-elongata_contig96124:605..742+

protein sequence of mRNA_H-elongata_contig96124.17008.1

>prot_H-elongata_contig96124.17008.1 ID=prot_H-elongata_contig96124.17008.1|Name=mRNA_H-elongata_contig96124.17008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MVDVCQGVTHVHDHGFVHSDIKLQNILLYEPAYNRCIAKLSDFG

mRNA from alignment at H-elongata_contig96124:605..742+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig96124.17008.1 ID=mRNA_H-elongata_contig96124.17008.1|Name=mRNA_H-elongata_contig96124.17008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig96124:605..742+ (Himanthalia elongata Himel1 dioecious)
AGGCTCATGGTCGACGTCTGCCAAGGCGTCACCCATGTGCACGACCATGG
ATTCGTGCACTCTGATATCAAGCTTCAGAATATTCTGCTGTACGAACCAG
CATATAATCGGTGTATCGCCAAGCTTTCCGACTTTGGT

Coding sequence (CDS) from alignment at H-elongata_contig96124:605..742+

>mRNA_H-elongata_contig96124.17008.1 ID=mRNA_H-elongata_contig96124.17008.1|Name=mRNA_H-elongata_contig96124.17008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig96124:605..742+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGACGTCTGCCAAGGCGTCACCCATGTGCACGACCATGGATTCGT
GCACTCTGATATCAAGCTTCAGAATATTCTGCTGTACGAACCAGCATATA
ATCGGTGTATCGCCAAGCTTTCCGACTTTGGTATGGTCGACGTCTGCCAA
GGCGTCACCCATGTGCACGACCATGGATTCGTGCACTCTGATATCAAGCT
TCAGAATATTCTGCTGTACGAACCAGCATATAATCGGTGTATCGCCAAGC
TTTCCGACTTTGGT