mRNA_H-elongata_contig96092.17006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig96092.17006.1
Unique NamemRNA_H-elongata_contig96092.17006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Match: D7FSF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.300e-25
Identity = 52/67 (77.61%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    7 VEPEKRVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSDTSEAPEVTPPKFIEVVKGVIRNFGNV 207
            V+PEKR++RQLLRA+ RE RL IL++AFR+RAKVVLADGS+TSEAP+V PPKFIE VKG+IRNFGNV
Sbjct:  184 VDPEKRLVRQLLRAKDREARLNILTKAFRQRAKVVLADGSETSEAPDVAPPKFIETVKGIIRNFGNV 250
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BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Match: A0A7R9UEH5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEH5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.020e-13
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   13 PEKRVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSDTSEAPEVTPPKFIEVVKGVIRNFGNV 207
            PE+ +LRQLLR E  E R++IL++AFR R K+ L DG +T+E P V PP  IE  K ++ NF N+
Sbjct:    1 PEQALLRQLLRTESSEARIDILNEAFRPRKKLALTDGQETTEMPRVPPPSLIEAAKTLLLNFANI 65
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BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Match: W7TEP8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.100e-9
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   22 RVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSDTSEAPEVTPPKFIEVVKGVIRNFGNV 207
            R++R+LLR    E+R EIL  AFR +A  + A+G+ T   P+V PP FIE ++ +I+NFGN+
Sbjct:  386 RLVRRLLRVADPEKRKEILHDAFRPKASALTAEGAKTGAMPDVPPPDFIEELRQLIKNFGNI 447
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BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Match: A0A6U1M7L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M7L3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.420e-6
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:    7 VEPEKRVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSD--------------TSEAPEVTPPKFIEVVKGVIRNFGNV 207
            ++PEK++LRQLLR +    R ++L  AF+ +   VLA  +D              + +AP+V PP FI   K VI  FGN+
Sbjct:  252 MDPEKKLLRQLLRTDDTNARKKMLEAAFKPKEAFVLASSADQNVIQGGGSSGQQESKKAPDVAPPAFIAECKAVIEQFGNI 332
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BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Match: M2XS91_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XS91_GALSU)

HSP 1 Score: 50.1 bits (118), Expect = 2.250e-5
Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   13 PEKRVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSDTSEAPEVTPPKFIEVVKGVIRNFGNV 207
            PE  V+RQLLR E  E R EIL +AF     + +ADGS      ++   KF++V+K +   FGN+
Sbjct:  315 PEVAVVRQLLRTESEEARREILKKAFSVGPAIYMADGSVAPSKSKINGKKFVQVLKKLKEEFGNI 379
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BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Match: A0A2V3IXN8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXN8_9FLOR)

HSP 1 Score: 49.7 bits (117), Expect = 3.080e-5
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    1 MQVEPEKRVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSDTSEAPEVTPPKFIEVVKGVIRNFGNV 207
            +Q+EPE R++R LLR E  E R ++L  +F+ R  V L DG+ TS    V   KF+  ++ +I  FGNV
Sbjct:  296 VQLEPEVRLIRALLRTEDSEARTKMLMDSFKSRGSVTLVDGTVTSGIA-VDGKKFVAALRKLIEEFGNV 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig96092.17006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FSF0_ECTSI4.300e-2577.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UEH5_9STRA4.020e-1350.77Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TEP8_9STRA9.100e-946.77Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6U1M7L3_9STRA6.420e-637.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M2XS91_GALSU2.250e-541.54Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A2V3IXN8_9FLOR3.080e-542.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig96092contigH-elongata_contig96092:1113..2147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog2880.D7FSF0
EggNOG OGs2AUPK@1,2RZUJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931355.1133668-CDS-H-elongata_contig96092:1112..11841622931355.1133668-CDS-H-elongata_contig96092:1112..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96092 1113..1184 +
1691679802.8575144-CDS-H-elongata_contig96092:1112..11841691679802.8575144-CDS-H-elongata_contig96092:1112..1184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96092 1113..1184 +
1622931355.1255279-CDS-H-elongata_contig96092:2012..21471622931355.1255279-CDS-H-elongata_contig96092:2012..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96092 2013..2147 +
1691679802.8694346-CDS-H-elongata_contig96092:2012..21471691679802.8694346-CDS-H-elongata_contig96092:2012..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig96092 2013..2147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig96092.17006.1prot_H-elongata_contig96092.17006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig96092 1113..2147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig96092.17006.1

>prot_H-elongata_contig96092.17006.1 ID=prot_H-elongata_contig96092.17006.1|Name=mRNA_H-elongata_contig96092.17006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MQVEPEKRVLRQLLRAEGREERLEILSQAFRKRAKVVLADGSDTSEAPEV
TPPKFIEVVKGVIRNFGNV
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mRNA from alignment at H-elongata_contig96092:1113..2147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig96092.17006.1 ID=mRNA_H-elongata_contig96092.17006.1|Name=mRNA_H-elongata_contig96092.17006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig96092:1113..2147+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGGAGCCGGAGAAACGTGTCCTTCGTCAGCTGCTTCGTGCCGA
GGGCAGGGAGGAGCGACTCGAGGTGCTGTATCGACCCTTTTTTAGGGGGG
TGTGGGGGGGATCAGGCATAGAATGGAGATAAGATGTATCGAAATTGGCT
TCCAAAACCCGTTCAATTTCTGTTCAAGCTCTTCGCCATTGATGTCGCTT
GATACTCCTTTCAGCGTTTGTAGTATCATTGAAGCTAAAATTCTAGCTAG
CTGTGACGCTGCTTGTTCGGCGGTCGAGCTATCAAATGCCTGCCAACCCT
GCTAGTGGTCTCAAGAATTACGAAAAGGTCGGCGGGTCGCGCCTCAGAGG
TACCCTATGGCTTACTGGCACAATTAGTTCAATGCCGTAGGTGGCAGTAG
ATGGCATATCCCGGAGATGAGTATCACATCATGCACCGTGCGCATCTTTT
CCTGTCCACCACTCAAAAAGGTACATGACAGTACATCATGCACCGTACGC
ATCTGTTTCTGTCCACCCCTCAAAAAGATACATCACAGTACATCATGCAC
CGTACGCATCTTTTTCTGTCCACCCCTCAAAAGGTACATCACAGTACGCC
CGTGCAAGCAACTCTTGGTCCAACAAGTTATCGCGGCGAGATCTCTCTTG
CTCAAGTCCGCCGTGTTCAACTGTTGCTGATCGTGTACTCGTAGATGTCG
AACATGTTACACCTCGTCACCCCTGCAATGCATCTCCTCTCCCTCTCCTG
CATTGTATGTATTGCCCCGCTTTCTTCTGACAGTGCCCCCCCCCTCCGTC
CTCTGTCCTCAACGCAACCCAACCTGTACCAAACCTACCCAATTTTTATG
CTGCATCTCTCTCTATCTGTCTGTCTTTTTCTGGCTATCTCTCCCTCAAG
ATTCTCAGCCAGGCTTTCCGGAAGCGCGCAAAGGTTGTGCTGGCCGATGG
ATCCGATACATCCGAAGCTCCGGAGGTGACACCCCCCAAGTTTATCGAGG
TGGTCAAGGGGGTTATCCGGAACTTCGGCAACGTG
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Coding sequence (CDS) from alignment at H-elongata_contig96092:1113..2147+

>mRNA_H-elongata_contig96092.17006.1 ID=mRNA_H-elongata_contig96092.17006.1|Name=mRNA_H-elongata_contig96092.17006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig96092:1113..2147+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGTGGAGCCGGAGAAACGTGTCCTTCGTCAGCTGCTTCGTGCCGA
GGGCAGGGAGGAGCGACTCGAGATGCAGGTGGAGCCGGAGAAACGTGTCC
TTCGTCAGCTGCTTCGTGCCGAGGGCAGGGAGGAGCGACTCGAGATTCTC
AGCCAGGCTTTCCGGAAGCGCGCAAAGGTTGTGCTGGCCGATGGATCCGA
TACATCCGAAGCTCCGGAGGTGACACCCCCCAAGTTTATCGAGGTGGTCA
AGGGGGTTATCCGGAACTTCGGCAACGTGATTCTCAGCCAGGCTTTCCGG
AAGCGCGCAAAGGTTGTGCTGGCCGATGGATCCGATACATCCGAAGCTCC
GGAGGTGACACCCCCCAAGTTTATCGAGGTGGTCAAGGGGGTTATCCGGA
ACTTCGGCAACGTG
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