mRNA_H-elongata_contig9601.16996.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE) HSP 1 Score: 650 bits (1678), Expect = 8.820e-224 Identity = 399/599 (66.61%), Postives = 437/599 (72.95%), Query Frame = 1
Query: 1 AAFEKRFEQFYLQLSEGKTGGMVACVDEMKRIVESMRRGDRSSE-----HAAAET--------SSGVTVYDEMLQDCRRKAGEATLDRLRKLCQRLVRPGAV--DEVDELEGEG---MAEEETIVVSYHAALLGKAESAANIYGGFLRKRLKKANDSTVKNLSSTRALYRLNLASGXXXXXXXXXXRSDTGVVPDGTAATAFTADPHPHLTALATVLGEGSKLMARLAESSLGQGVEEPVVQLLHNDSKAQAVKVLEWFQRDADLPKWQTQVSGGTAEARDSTESRRASPTPSSGNGREAIGGGVCNDMKTSGGGASAAGSGRSSFDARGVDFVIDEMALACQYCQRYLDFVADDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVEAEIGG-DHHEHDHERQPDDFSTALAK------ALDEAADAEL--RGEDAVTVAATRSDGRNTSARFGGVEGAMVGINSVHVALSSVSAIQDALDRFLESSNPLVRLMMDEVARILRAYKDLRDSRLNDLL 1716
A FE+RFEQFYLQL+EGKTGGMVACVDEM+RIV+S R+ ++ + AAA S VYDEMLQDCRRKAGE TLDRLRKLCQ+L RP A D+ + G+G + EEET+VVSYHAALLGKAE AANIYGGFLR RLK+AND+ VK LSS R LYRL+LASGXXXXXXXXXX ADPHPH+TALATVLGEGSKLM RLAESSLG GV EPV +LLH DSK QAVK+LEWFQ DADLPKWQ QVSG TA R + FDARG+DFVIDEMALACQYC RYLDFVADDLGL E+ +S+F+ QVR+ EGAYVQLE AYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPV GG E ++QP+DFSTALAK AL+EAAD RGE + A G FG VEGAMVGINSVHVALSSVSAIQDAL+RFLE+SNPLV LM+DEVARILR+YK+LRDSRLND+L
Sbjct: 41 ATFEERFEQFYLQLAEGKTGGMVACVDEMQRIVDSTRQREQQLDPVKPPSAAAPPQGXXXXXXSPSAAVYDEMLQDCRRKAGEVTLDRLRKLCQKLSRPDANRHDDGGRMGGDGGTALGEEETVVVSYHAALLGKAEGAANIYGGFLRNRLKQANDAAVKKLSSLRPLYRLSLASGXXXXXXXXXXXXXXXXX-XXXXXXXXXADPHPHITALATVLGEGSKLMVRLAESSLGDGVMEPVAELLHKDSKTQAVKILEWFQHDADLPKWQAQVSGRTAVERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXEGLFDARGMDFVIDEMALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLTEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVGGGEGGRGDGEKGSDQQPNDFSTALAKWDCGGWALEEAADEHSGPRGEGSGNGGAA---GIWAGEGFGEVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVGLMLDEVARILRSYKELRDSRLNDVL 627
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI) HSP 1 Score: 316 bits (809), Expect = 3.790e-98 Identity = 177/253 (69.96%), Postives = 188/253 (74.31%), Query Frame = 1
Query: 958 MALACQYCQRYLDFVADDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVEAEIGGDHHEHDHERQPDDFSTALAKALDEAADAELRGEDAVTVAATRSDGRNTSARFGGVEGAMVGINSVHVALSSVSAIQDALDRFLESSNPLVRLMMDEVARILRAYKDLRDSRLNDLL 1716
MALACQYC RYLDFVADDLGL E+ +S+F+ QVR+IEGAYVQLE AYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSF+GGLATEADHRVPV G VEGAMVGINSVHVALSSVSAIQDAL+RFLE+SNPLV LM+DEVARILR+YKDLRDSRLND+L
Sbjct: 1 MALACQYCHRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPVGGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVGLMLDEVARILRSYKDLRDSRLNDVL 253
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: W7TI94_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI94_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.330e-35 Identity = 132/462 (28.57%), Postives = 192/462 (41.56%), Query Frame = 1
Query: 139 AAETS-SGVTVYDEMLQDCRRKAGEATLDRLRKLCQRLVRPGAVDEVDELEGEGMAEEETIVVSYHAALLGKAESAANIYGGFLRKRLKKANDSTVKNLSSTRALYRLNLASGXXXXXXXXXXRSDTGVVPDGTAATAFTADPHPHLTALATVLGEGSKLMARL------AESSLGQGVEEP---------------------VVQLLHNDSKAQAVKVLEWFQRDADLPKWQTQVSGGTAEARDSTESRRASPTPSSGNGREAIGGGVCNDMKTSGGGASAAGSGRSSFDARGVDFVIDEMALACQYCQRYLDFVADDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVEAEIGGDHHEHDHERQPDDFSTALAKALDE 1440
AAETS V EML+DC RK G+ L+ LRK + A LE L + AANIYGGFL++RL ++ + ++ L S R+L RL + S + D PH+T L+ +LGE S+++ L E Q E +V L+N ++ QA+K+L+W+ D + +WQ + G + +DF +DE+ L RYL FVA REE D F+QV+ + G YV +E AYC +V +A+ +P EVQ+G VS++VED ++++S+ R+ T S+QAI+AV +R TE+L P + PSF L + R E GG D FS AL + LDE
Sbjct: 112 AAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLE---------------CVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNS----------------QADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSAR---------------------------------------------GTEDLVVQELDFALDELQLVLGLSNRYLAFVAAP---REE-CMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDS-VPSFAAALQALVEDRSLTGVEAGGG--------AMDQFSRALQQQLDE 484
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: W7TYV3_9STRA (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYV3_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.600e-34 Identity = 132/462 (28.57%), Postives = 192/462 (41.56%), Query Frame = 1
Query: 139 AAETS-SGVTVYDEMLQDCRRKAGEATLDRLRKLCQRLVRPGAVDEVDELEGEGMAEEETIVVSYHAALLGKAESAANIYGGFLRKRLKKANDSTVKNLSSTRALYRLNLASGXXXXXXXXXXRSDTGVVPDGTAATAFTADPHPHLTALATVLGEGSKLMARL------AESSLGQGVEEP---------------------VVQLLHNDSKAQAVKVLEWFQRDADLPKWQTQVSGGTAEARDSTESRRASPTPSSGNGREAIGGGVCNDMKTSGGGASAAGSGRSSFDARGVDFVIDEMALACQYCQRYLDFVADDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVEAEIGGDHHEHDHERQPDDFSTALAKALDE 1440
AAETS V EML+DC RK G+ L+ LRK + A LE L + AANIYGGFL++RL ++ + ++ L S R+L RL + S + D PH+T L+ +LGE S+++ L E Q E +V L+N ++ QA+K+L+W+ D + +WQ + G + +DF +DE+ L RYL FVA REE D F+QV+ + G YV +E AYC +V +A+ +P EVQ+G VS++VED ++++S+ R+ T S+QAI+AV +R TE+L P + PSF L + R E GG D FS AL + LDE
Sbjct: 112 AAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLE---------------CVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNS----------------QADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSAR---------------------------------------------GTEDLVVQELDFALDELQLVLGLSNRYLAFVAAP---REE-CMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDS-VPSFAAALQALVEDRSLTGVEAGGG--------AMDQFSRALQQQLDE 484
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A7S3XW30_HETAK (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW30_HETAK) HSP 1 Score: 136 bits (343), Expect = 1.690e-31 Identity = 95/273 (34.80%), Postives = 143/273 (52.38%), Query Frame = 1
Query: 925 DARGVDFVIDEMALACQYCQRYLDFVADDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPE------PSFYGGLATEADHRVP-VEAEIGGDHHEHDHERQPDDFSTALAKALDEAADAELRGEDA---------VTVAATRSDGRNTSARFGGVEGAMVGINSVHVALSSVSAIQDALDRFLESSNPLVRLMMDEVARILRAYKDLRD 1695
D +D V DE++ CQ RYL FV +G E+ + + +++ + G ++ +E YC +V A+ ++EPIEVQ G Y S++VEDA FLV KSL R++ST S+QA MAV NR+ E+LDP PSFY L D R V AE A A A E ++ G +A +AA + + + R V+ INS HVA+SS++A++D + +L++ +PLV+ M+D+ RI+ Y+ L D
Sbjct: 97 DPAQLDVVADELSYLCQLVTRYLSFVCMTIGHDEQ--GELYGKLQQLIGTFISVEDLYCQLNVRRAIELSEPIEVQPGVYCSTLVEDAFFLVKKSLERTLSTCSDQATMAVSNRLAELLDPQQAAAGGEGAPSFYAALRAMGDVRPQEVLAE-----------------KRAAAAAQGEGGAGKVPGAEAPPAPPDLAQALLAAAIEEEESKALR---VDSIAFQINSAHVAISSITAMRDMMSEYLDAESPLVQTMLDDFRRIMEPYQALVD 347
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A836CHF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF9_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.590e-23 Identity = 122/414 (29.47%), Postives = 161/414 (38.89%), Query Frame = 1
Query: 142 AETSSGVTVYDEMLQDCRRKA----------GEATLDRLRKLCQRLVRPGAVDEVDELEGEGMAE---EETIVVSYHAAL-LGKAESAANIYGGFLRKRLKKANDSTVKNLSSTRALYRLNLASGXXXXXXXXXXRSDTGVVPDGTAATAFTADPHPHLTALATVLGEGSKLMARLAESSLGQGVEEPVVQL------------------------LHNDSKAQAVKVLEWFQRDADLPKW----QTQVSGGTAEARDSTESRRASPTPSSGNGREAIGGGVCNDMKTSGGGASAAGSGRSSFDARGVDFVIDEMALACQYCQRYLDFVADD----------LGLREEPT------------------SDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSS 1173
A+ ++ +VY EML CR K GEA ++ LR+ C+ R V +E + + H A+ LG+ + AANI+GG+LR R K D +K LS+ RALYRL S + T A A D HPH+TA+A VLG + +ARL + L LH ++ A A L WF+ DA L +W QT V S A D + +DF+IDE+A ACQ QRYLDF A + R P +V+ + GAYVQLE AYCL SV +A+RIAEPIEV G +VSS
Sbjct: 2 ADIAAPGSVYAEMLDACRAKVPPPTAELTTGGEAAVEALRQQCK-AAREAMVQXXXXXXXXXXXXXXXDEMLDATCHLAVCLGREKQAANIFGGYLRSRAKGVADRALKRLSAQRALYRL----------------SQVRCIQACTEADA--EDAHPHVTAVAAVLGTAAAQLARLRGAGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLHGEACAAATSALTWFEADAGLARWLERAQTAVQANMQXXXXXXXXXXXXXXXRS----------------------PAXXXXXPPLDPKTMDFLIDELAFACQLGQRYLDFAAQEGVSCCEGGPNPSARASPPRAARSPRKGGDEEGEGGEGGLLSRVQALVGAYVQLEDAYCLLSVHKALRIAEPIEVTAGVFVSS 374
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A7S2NVR4_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVR4_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 9.700e-12 Identity = 54/182 (29.67%), Postives = 89/182 (48.90%), Query Frame = 1
Query: 925 DARGVDFVIDEMALACQYCQRYLDFVADDLGLREEPTSD-----FFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEA--DHR---VPVEAEIGGDHHEHDHERQPDDFSTALAKALDE 1440
D G+D V++E+A CQ RY F+ L ++ ++ ++ G Y LE S++ A+ IA P+E+ DG +V S+VEDA F+ +++ R+ ST + QA++ + NR+ E E Y L +A DHR V E + + + DDF+ A A+D+
Sbjct: 343 DVTGLDVVLEELAFLCQVSARYCQFIDSTLEFMSASSTSSSDRPLWLLLQEHSGQYATLEDCLSKSSLDRAIDIAAPVEIMDGVFVPSVVEDAFFVSRRAVERASSTFNSQALITLANRIAEAW---GIEGGIYKALIDDAGSDHRSKNVQTLQETQVNQAQSKSAAEKDDFTAAFLDAIDD 521
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A7S1XX70_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX70_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.730e-10 Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 1018 LREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGT-YVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGL 1320
LR P F + + G YV LE + ++++A+ I+ V DG +VS++ EDA F++ KS+ R++ST QAIMAV NRV E+LDP + EP Y L
Sbjct: 163 LRAHP---LFTKRAEVLGVYVTLEETFLGANIKKALSISRMRRVGDGARFVSTLAEDAFFILKKSMGRALSTGDTQAIMAVTNRVAEMLDPASAEPLIYAAL 261
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A0W8D5P1_PHYNI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D5P1_PHYNI) HSP 1 Score: 71.2 bits (173), Expect = 1.020e-9 Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 937 VDFVIDEMALACQYCQRYLDFVA---DDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVC 1260
+D +DE+A + Y F+A + LG ++ F V+V+ + G YV LE Y +SV +A IAEP E++ G YVSS+VED SF+++K+L R+ + M +C
Sbjct: 231 IDLFLDELAFIIRVLVSYTAFLATVCEGLGQKD---GGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKALFRASQWCVQSVFMIIC 338
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Match: A0A8J5ING4_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5ING4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.680e-9 Identity = 64/237 (27.00%), Postives = 112/237 (47.26%), Query Frame = 1
Query: 937 VDFVIDEMALACQYCQRYLDFVA---DDLGLREEPTSDFFVQVRVIEGAYVQLEVAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVEAEIG--GDHHEHDHERQPDDFSTALAKALDEAADAELRGEDAVTVAATRSDGRNTSARFGGVEGAMVGINSVHVALSSVSAIQDALDRFLESSNP 1632
+D +DE+A + Y F+A + LG +++ F V+V+ + G YV LE Y +SV +A IAEP E++ G YVSS+VED SF+++K+ R+ + +++ + + L+ + P+ A IG G+ + D + FS L +A+DE + L+ E AR ++ INS +++ V A+Q+ ++ F +S P
Sbjct: 231 IDLFLDELAFIIRVLVSYTAFLATVCEGLG-QQDGNRGFQVKVQELTGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKAFFRTSQCMNYHTALSIVIALVDALESQYLQAILVLPSRPCVIPLSPINAAIGQSGNSIDDDQGQNEVSFSDMLLQAVDEDLERTLQEE----------------ARL------LMTINSAYMSGEFVRALQEKIEEFSSASFP 444 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9601.16996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9601.16996.1 >prot_H-elongata_contig9601.16996.1 ID=prot_H-elongata_contig9601.16996.1|Name=mRNA_H-elongata_contig9601.16996.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=572bp AAFEKRFEQFYLQLSEGKTGGMVACVDEMKRIVESMRRGDRSSEHAAAETback to top mRNA from alignment at H-elongata_contig9601:129..6184- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9601.16996.1 ID=mRNA_H-elongata_contig9601.16996.1|Name=mRNA_H-elongata_contig9601.16996.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6056bp|location=Sequence derived from alignment at H-elongata_contig9601:129..6184- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9601:129..6184- >mRNA_H-elongata_contig9601.16996.1 ID=mRNA_H-elongata_contig9601.16996.1|Name=mRNA_H-elongata_contig9601.16996.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3432bp|location=Sequence derived from alignment at H-elongata_contig9601:129..6184- (Himanthalia elongata Himel1 dioecious)back to top |